Synthesis of C-nucleosides designed to participate in triplex formation with native DNA: specific recognition of an A:T base pair in DNA

[structure: see text] We have previously described a system of 2-aminoquinoline- and 2-aminoquinazoline-based C-deoxynucleosides (TRIPsides) that are designed to be incorporated into oligomers that can specifically bind in the major groove via Hoogsteen base pairing to any sequence of native DNA. The four TRIPsides are termed antiGC, antiCG, antiTA, and antiAT with respect to the Watson-Crick base pair targets that they bind. The first three TRIPsides have been prepared, characterized, and shown to form stable and sequence-specific triplexes. In the present study, we describe the preparation of two molecules, 2-amino-4-(2'-deoxy-beta-D-ribofuranosyl)quinazoline (7) and 2-amino-6-fluoro-4-(2'-deoxy-beta-D-ribofuranosyl)quinoline (14), that can serve as the remaining antiAT TRIPside. The phosphoramidites of 7 and 14 were prepared, but only the latter was successfully incorporated into DNA oligomers. It is demonstrated using UV-visible melting experiments that 14 forms sequence-specific intramolecular triplets with A:T base pairs at physiological pH.     

Photoinduzierte Cycloadditionen von 3-Benzyl-2H-azirin

Irradiation of 2-azido-3-phenyl-propene ( 5 ) in pentane or benzene solution with a high pressure lamp (pyrex filter) yields 3-benzyl-2H-azirin ( 6 ), which on further irradiation behind quartz or vycor in the presence of trifluoroacetic acid methylester or carbon dioxide yields 4-benzyl-5-methoxy-5-trifluoromethyl-3-oxazolin ( 8 ) and 4-benzyl-3-oxazolin-5-one ( 9 ), respectively (scheme 2). A small amount of 3-phenylacetonitrile is also formed.     

Selectivities in 1,2,3-triazolide displacements of halides and additions to alkynes

4,5-Dicarbomethoxy-1,2,3-triazolide or 4-phenyl-1,2,3-triazolide displace chloride from ethyl chloroacetate or β-chloropropionate to give both 1-N and 2-N alkylated products. Our highest 2-N to 1-N selectivity was ca 5/1 and was found with the base triethylamine in DMF. The same triazolides and others add to alkynes, e.g. ethyl propiolate, methyl acetylenedicarboxylate, phenylpropiolaldehyde, ethyl phenylpropiolate, etc, to give Michael adducts at the 2-N position exclusively. Here the usual preference holds, i.e., the anti adduct is favored, but anti to syn isomerization usually sets in. On the basis of the available data for nucleophilic substitutions and additions, a limited directioselectivity pattern emerges for H-1,2,3-triazoles (T) and their anions (T^?): neutral T almost invariably leads with 1-N; T^t-- usually adds to unsaturates at 2-N; unsubstituted, 4-substituted and 4,5-disubstituted T^? attack organic halides at both 1-N and 2-N. Compared to phenyl, 2-triazolyl exerts a greater deshielding effect on proton chemical shifts; these and other patterns in the PMR spectra of the Michael adducts are discussed. CNDO calculations indicate that the 1-H is more stable than the 2-H-1,2,3-triazole and that in both neutral triazole and in triazolide, the 1-nitrogen position should lead nucleophilic attacks-this directioselectivity prediction is only partly (and probably fortuitously) correct.     

INDUCTION OF CHROMOSOME ABERRATIONS IN ICR 2A FROG CELLS EXPOSED TO265–313 nm MONOCHROMATIC ULTRAVIOLET WAVELENGTHS and PHOTOREACTIVATING LIGHT

Abstract— Exposure of ICR 2A cells to either 265, 289, 302 or 313 nm monochromatic UV wavelengths caused the induction of chromosome aberrations with chromatid gaps and breaks being the most common type of aberration detected. Treatment of U V-irradiated cells with photoreactivating light (PRL) resulted in a lower yield of aberrations demonstrating that pyrimidine dimers are involved in the formation of chromosome aberrations induced by the UV wavelengths tested. However, the decrease in the level of aberrations resulting from PRL treatment of 313 nm-irradiated cells was significantly less than for the other wavelengths indicating that non-dimer photoproducts may have played an important additional role in the induction of chromosome aberrations by this UV wavelength.     

Protein profiles and identification of high performance liquid chromatography isolated proteins of cancer cell lines using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOFMS) has been used to rapidly profile the protein content of human cell lysates from MCF-10 cell and variant lines. The method was used to study the protein profiles of these cells as they progressed from normal breast epithelium to fully malignant cells. Distinct differences in the protein profiles were observed with progression, and specific proteins associated with carcinogenesis (p53, c-myc, and c-erbB-2) were heavily expressed in these cells as detected by MALDI-TOFMS. These proteins were also isolated using non-porous reversed-phase high performance liquid chromatography (NP-RP-HPLC) and mass analyzed by MALDI-TOFMS to provide molecular weight information without interference from other proteins in the whole cell lysates, and to avoid suppression effects in mixtures of proteins detected by MALDI-TOFMS. In order to confirm the identity of these oncoproteins, the cell lysates were subjected to one-dimensional (1-D) gel separation and subsequently electroblotted onto a poly(vinylidene difluoride) (PVDF) membrane for further analysis. Trypsin and cyanogen bromide digestions were performed on these proteins eluted from excised PVDF bands which were then analyzed by MALDI-TOFMS. The identity of these proteins was confirmed by database matching procedures.     

Determination of primary amines by means of fluorescent schiff base derivatives

The formation of Schiff bases from the reaction of primary amines and several aromatic aldehydes has been studied. In many cases the Schiff bases were too unstable or feebly-fluorescent to be of analytical value. 1-Pyrenealdehyde and 2-fluorenealdehyde, however, were found to be suitable fluorigenic reagents for primary aliphatic amines, forming Schiff bases that were very stable and intensely fluorescent in acidic ethanol. The derivatives of 1-pyrenealdehyde could be detected at concentrations less than 1 ng ml^-1 in pure solution. Derivatives of 1-pyrenealdehyde could be readily produced by reactions at the surface of a t.l.c. plate. Combination of this approach with a simple deproteinizing procedure permitted analysis for nanograna quantities of primary amines in blood serum.     

Total Synthesis of (+/-)-Leporin A

An efficient synthesis of (+/-)-leporin A (1) has been developed using a tandem Knoevenagel condensation-inverse electron demand intramolecular hetero Diels-Alder reaction to construct the key tricyclic intermediate 3 from pyridone 5 and dienal 6 in one pot in 35% yield. Hydroxylation (71%) of 3 and methylation (77%) of the resulting hydroxypyridone 2 completed the first total synthesis of (+/-)-leporin A (1).     

Self-selection in olefin cross-metathesis: the effect of remote functionality

Olefin cross-metathesis (CM) is potentially an attractive method for generating dynamic combinatorial libraries (DCLs). In order for the CM reaction to be useful for DCL production, the course of the reaction and product distribution must be relatively insensitive to functionality remote from the reacting centers. We report on the CM of a series of allyl- and homoallylamides that are strongly dependent on remote functionality. This includes an unusual example of a cis-selective CM. [Reaction: see text]