Can Helical Peptides Unwind One Turn at a Time? ‐ Controlled Conformational Transitions in α,β2,3‐Hybrid Peptides

Unfolding of helical trans‐β^2,3‐hybrid peptides with (α–β)_nα composition, when executed by increasing solvent polarity or temperature, proceeded in a systematic manner with the turns unwinding sequentially; C‐terminal region of these peptides were first to unwind and the process propagated towards N terminus with more and more β residues equilibrating from the gauche to the anti rotameric state across C_α?C_β. This is evidenced by clear change in their C_βH signal splitting, ³J_CαH–CβH values, and sequential disappearance of i,i+2 NOEs.     

Measurement of dispersion numbers for 36 and 100% tri-isoamyl phosphate solvents equilibrated with aqueous nitric acid solutions

The cross sections for the ¹¹⁸Sn (n, α)¹¹⁵Cd, ¹²⁰Sn (n, α)^117gCd and ¹²⁰Sn (n, α)^117mCd reactions have been measured in the neutron energy range of 13.5–14.6 MeV using the activation technique and a coaxial HPGe γ-ray detector. The fast neutrons were produced by the T (d, n) ⁴He reaction. The neutron energies in the measurements were determined by cross section ratios for ⁹³Nb(n,2n)^92mNb and ⁹⁰Zr(n, 2n)^89m+gZr reactions. The results of present work were discussed and compared with theoretical calculation data, measurement results found in the literature and with the comprehensive evaluation data in ENDF/B-VII.0, CENDL-3.1, JENDL-4.0 libraries.     

Nickel(II) complexes of tripodal 4N ligands as catalysts for alkane oxidation using m-CPBA as oxidant: ligand stereoelectronic effects on catalysis

Several mononuclear Ni(II) complexes of the type [Ni(L)(CH(3)CN)(2)](BPh(4))(2) 1-7, where L is a tetradentate tripodal 4N ligand such as N,N-dimethyl-N',N'-bis(pyrid-2-ylmethyl)ethane-1,2-diamine (L1), N,N-diethyl-N',N'-bis(pyrid-2-ylmethyl)ethane-1,2-diamine (L2), N,N-dimethyl-N'-(1-methyl-1H-imidazol-2-ylmethyl)-N'-(pyrid-2-ylmethyl)ethane-1,2-diamine (L3), N,N-dimethyl-N',N'-bis(1-methyl-1H-imidazol-2-ylmethyl)ethane-1,2-diamine (L4), N,N-dimethyl-N',N'-bis(quinolin-2-ylmethyl)ethane-1,2-diamine (L5), tris(benzimidazol-2-ylmethyl)amine (L6) and tris(pyrid-2-ylmethyl)amine (L7), have been isolated and characterized using CHN analysis, UV-Visible spectroscopy and mass spectrometry. The single-crystal X-ray structures of the complexes [Ni(L1)(CH(3)CN)(H(2)O)](ClO(4))(2) 1a, [Ni(L2)(CH(3)CN)(2)](BPh(4))(2) 2, [Ni(L3)(CH(3)CN)(2)](BPh(4))(2) 3 and [Ni(L4)(CH(3)CN)(2)](BPh(4))(2) 4 have been determined. All these complexes possess a distorted octahedral coordination geometry in which Ni(II) is coordinated to four nitrogen atoms of the tetradentate ligands and two CH(3)CN (2, 3, 4) or one H(2)O and one CH(3)CN (1a) are located in cis positions. The Ni-N(py) bond distances (2.054(2)-2.078(3) ?) in 1a, 2 and 3 are shorter than the Ni-N(amine) bonds (2.127(2)-2.196(3) ?) because of sp(2) and sp(3) hybridizations of the pyridyl and tertiary amine nitrogens respectively. In 3 the Ni-N(im) bond (2.040(5) ?) is shorter than the Ni-N(py) bond (2.074(4) ?) due to the stronger coordination of imidazole compared with the pyridine donor. In dichloromethane/acetonitrile solvent mixture, all the Ni(ii) complexes possess an octahedral coordination geometry, as revealed by the characteristic ligand field bands in the visible region. They efficiently catalyze the hydroxylation of alkanes when m-CPBA is used as oxidant with turnover number (TON) in the range of 340-620 and good alcohol selectivity for cyclohexane (A/K, 5-9). By replacing one of the pyridyl donors in TPA by a weakly coordinating -NMe(2) or -NEt(2) donor nitrogen atom the catalytic activity decreases slightly with no change in the selectivity. In contrast, upon replacing the pyridyl nitrogen donor by the strongly σ-bonding imidazolyl or sterically demanding quinolyl/benzimidazolyl nitrogen donor, both the catalytic activity and selectivity decrease, possibly due to destabilization of the intermediate [(4N)(CH(3)CN)Ni-O˙](+) radical species. Adamantane is selectively (3°/2°, 12-17) oxidized to 1-adamantanol, 2-adamantanol and 2-adamantanone while cumene is selectively oxidized to 2-phenyl-2-propanol. In contrast to cyclohexane oxidation, the incorporation of sterically hindering quinolyl/benzimidazolyl donors around Ni(ii) leads to a high 3°/2° bond selectivity for adamantane oxidation. A linear correlation between the metal-ligand covalency parameter (β) and the turnover number has been observed.     

Adsorption of collagen onto single walled carbon nanotubes: a molecular dynamics investigation

Classical molecular dynamics (MD) simulation has been carried out to understand the adsorption of collagen like peptides onto single walled carbon nanotubes (CNT) in an aqueous environment. It is observed that the triple helical structure of all the model collagen like peptides (CPs) has been unaltered upon adsorption onto CNT. The model CPs do not wrap around the CNT, however, the axis of the triple helix subtends a cross angle with respect to the axis of the CNT. The interaction between the CPs and CNT as well as that between the CPs and water molecules was observed by MD simulation snapshots. The inherent nature of the interaction of CPs with CNT facilitates the penetration of CPs into the water/CNT interface. During this process, water molecules trapped between the CPs and CNT are appreciably displaced. Although, hydrophobic-hydrophobic interaction is crucial for the interaction, the role of πR (R = OH and NH(2)) interactions are also observed from the geometrical parameters. The sequence specific interaction of CPs with CNT is evident from the results. It is found that the length of the CNT, curvature of the CNT and length of the CPs do not significantly influence interaction between the two systems. Overall the findings provide important information for the development of nanocomposite materials from collagen and CNT.     

Silicomolybdate doped polypyrrole film modified glassy carbon electrode for electrocatalytic reduction of Cr(VI)

Electrically conducting polypyrrole (PPy) film doped with silicomolybdate (SiMo₁₂ or SiMo₁₂) was synthesized by electrochemical polymerization. The synthesized film is capable of fast charge propagation during redox reactions in strong acid medium 0.2 M H₂SO₄ solution. Electrochemical quartz crystal microbalance was used to study the mechanism and amount of SiMo₁₂ doped in the PPy matrix. The modified electrode surface was characterized by using atomic force microscope technique, and it was found that the minimum and maximum globule size were estimated to be in the range of 50–200 nm. The thickness of film was measured to be approximately 30 ± 10 nm. The modified electrode shows electrocatalytic activity towards reduction of Cr(VI) and periodate. The rate constant and optimal film thickness were determined for electrocatalytic reduction of Cr(VI) by using rotating disc electrode experiment. Analytical characterization of the SiMo₁₂ doped PPy film modified electrode was demonstrated by flow injection analysis (FIA) technique and shows good stability for 16 continuous injections for Cr(VI) reduction with RSD of 1.6%.     

Silver Nanograins Incorporated PEDOT Modified Electrode for Electrocatalytic Sensing of Hydrogen Peroxide

A silver nanograins (Ag_NGs) incorporated poly[3,4‐ethylenedioxythiophene] (PEDOT) modified electrode was prepared by a simple electrochemical method without using any stabilizer or reducing agent. The surface morphology and thickness of the resulting modified electrode was characterized by using AFM. It was found that the size of the silver particles in the PEDOT modified electrode was smaller than that in the bare electrode. AFM studies also revealed that Ag_NGs were uniformly distributed in the PEDOT modified electrode and the thickness of the film was found to be 35 nm. The Ag_NGs incorporated PEDOT modified electrode exhibited good electrocatalytic activity towards the reduction of hydrogen peroxide without an enzyme or mediator immobilized in the electrode. It has shown good amperometric response to hydrogen peroxide (H₂O₂) with a detection limit of 7 μM and a response time of 5 s.     

Quantum chemical studies on (ZnO)n/(NiO)n heterostructured nanoclusters

The structural stability and electronic properties of (ZnO)_n, (NiO)_n, (ZnO)_n/(NiO)_n for n = (1 to 4) and 3D structures were studied using density functional theory. The geometrical optimisation of clusters implies that when the atoms in the cluster increase it leads to an increase in its stability. The stability drastically increases for the heterostructure of (ZnO)_n/(NiO)_n. The dipole moment of the clusters depends on the geometry of the cluster and it is found to be minimum for heterostructures representing more neutralised clusters. HOMO-LUMO energies, ionisation potential, electron affinity, chemical hardness, binding energies and vibrational analysis of different clusters are calculated and reported. The adsorption of CO on the different sites of nanoclusters are studied and discussed.     

Rigid NON- and NSN-ligand complexes of tetravalent and trivalent uranium: comparison of U-OAr2 and U-SAr2 bonding

A rigid NSN-donor proligand, 4,5-bis(2,6-diisopropylanilino)-2,7-di-tert-butyl-9,9-dimethylthioxanthene (H(2)[TXA(2)], 1) was prepared by palladium-catalyzed coupling of 2,6-diisopropylaniline with 4,5-dibromo-2,7-di-tert-butyl-9,9-dimethylthioxanthene. Deprotonation of 1 using (n)BuLi provided Li(2)(DME)(2)[TXA(2)] (2), and subsequent reaction with UCl(4) afforded [Li(DME)(3)][(TXA(2))UCl(3)] (4). The analogous NON-donor ligated complex [(XA(2))UCl(3)K(DME)(3)] [3; XA(2) = 4,5-bis(2,6-diisopropylanilino)-2,7-di-tert-butyl-9,9-dimethylxanthene] was prepared by the reaction of K(2)(DME)(x)[XA(2)] with UCl(4). A cyclic voltammogram (CV) of 3 in THF/[NBu(4)][B(C(6)F(5))(4)] at 200 mV s(-1) showed an irreversible reduction to uranium(III) at E(pc) = -2.46 V versus FeCp(2)(0/+1), followed by a product wave at E(1/2) = -1.83 V. Complex 4 also underwent irreversible reduction to uranium(iii) [E(pc) = -2.56 V], resulting in an irreversible product peak at E(pa) = -1.83 V. One-electron reduction of complexes 3 and 4 using K(naphthalenide) under an argon atmosphere in DME yielded 6-coordinate [(XA(2))UCl(DME)] (5) and the thermally unstable 7-coordinate [(TXA(2))U(DME)Cl(2)Li(DME)(2)] (6), respectively. The U-S distances in 4 and 6 are uncommonly short, the C-S-U angles are unusually acute, and the thioxanthene backbone of the TXA(2) ligand is significantly bent. By contrast, the xanthene backbone in XA(2) complexes 3 and 5 is planar. However, κ(3)-coordination and an approximately meridional arrangement of the ancillary ligand donor atoms is maintained in all complexes. DFT and Atoms in Molecules (AIM) calculations were carried out on 3, 4, 5, 6, [(XA(2))UCl(3)](-) (3B), [(TXA(2))UCl(2)(DME)](-) (6B) and [(TXA(2))UCl(DME)] (6C) to probe the extent of covalency in U-SAr(2) bonding relative to U-OAr(2) bonding.