Spectroscopic studies of substrate interactions with clavaminate synthase 2, a multifunctional alpha-KG-dependent non-heme iron enzyme: correlation with mechanisms and reactivities

Using a single ferrous active site, clavaminate synthase 2 (CS2) activates O(2) and catalyzes the hydroxylation of deoxyguanidinoproclavaminic acid (DGPC), the oxidative ring closure of proclavaminic acid (PC), and the desaturation of dihydroclavaminic acid (and a substrate analogue, deoxyproclavaminic acid (DPC)), each coupled to the oxidative decarboxylation of cosubstrate, alpha-ketoglutarate (alpha-KG). CS2 can also catalyze an uncoupled decarboxylation of alpha-KG both in the absence and in the presence of substrate, which results in enzyme deactivation. Resting CS2/Fe(II) has a six-coordinate Fe(II) site, and alpha-KG binds to the iron in a bidentate mode. The active site becomes five-coordinate only when both substrate and alpha-KG are bound, the latter still in a bidentate mode. Absorption, CD, MCD, and VTVH MCD studies of the interaction of CS2 with DGPC, PC, and DPC provide significant molecular level insight into the structure/function correlations of this multifunctional enzyme. There are varying amounts of six-coordinate ferrous species in the substrate complexes, which correlate to the uncoupled reaction. Five-coordinate ferrous species with similar geometric and electronic structures are present for all three substrate/alpha-KG complexes. Coordinative unsaturation of the Fe(II) in the presence of both cosubstrate and substrate appears to be critical for the coupling of the oxidative decarboxylation of alpha-KG to the different substrate oxidation reactions. In addition to the substrate orientation relative to the open coordination position on the iron site, it is hypothesized that the enzyme can affect the nature of the reactivity by further regulating the binding energy of the water to the ferrous species in the enzyme/succinate/product complex.     

Strong intra- and intermolecular aurophilic interactions in a new series of brilliantly luminescent dinuclear cationic and neutral au(I) benzimidazolethiolate complexes

The structural and photophysical properties of a new series of cationic and neutral Au(I) dinuclear compounds (1 and 2, respectively) bridged by bis(diphenylphosphino)methane (dppm) and substituted benzimidazolethiolate (X-BIT) ligands, where X = H (a), Me (b), OMe (c), and Cl (d), have been studied. Monocationic complexes, [A(u2)(micro-X-BIT)(micro-dppm)](CF(3)CO(2)), were prepared by the reaction of [A(u2)(micro-dppm)](CF(3)CO(2))(2) with 1 equiv of X-BIT in excellent yields. The cations 1a-1d possess similar molecular structures, each with a linear coordination geometry around the Au(I) nuclei, as well as relatively short intramolecular Au(I)...Au(I) separations ranging between 2.88907(6) A for 1d and 2.90607(16) A for 1a indicative of strong aurophilic interactions. The cations are violet luminescent in CH(2)Cl(2) solution with a lambda(em)(max) of ca. 365 nm, assigned as ligand-based or metal-centered (MC) transitions. Three of the cationic complexes, 1a, 1b, and 1d, exhibit unusual luminescence tribochromism in the solid-state, in which the photoemission is shifted significantly to higher energy upon gentle grinding of microcrystalline samples with DeltaE = 1130 cm(-1) for 1a, 670 cm(-1) (1b), and 870 cm(-1) (1d). The neutral dinuclear complexes, [A(u2)(micro-X-BIT)(micro-dppm)] (2a-2d) were formed in good yields by the treatment of a CH(2)Cl(2) solution of cationic compounds (1) with NEt(3). 2a-2d aggregate to form dimers having substantial intra- and intermolecular aurophilic interactions with unsupported Au(I)...Au(I) intermolecular distances in the range of 2.8793(4)-2.9822(8) A, compared with intramolecular bridge-supported separations of 2.8597(3)-2.9162(3) A. 2a-2d exhibit brilliant luminescence in the solid-state and in DMSO solution with red-shifted lambda(em)(max) energies in the range of 485-545 nm that are dependent on X-BIT and assigned as ligand-to-metal-metal charge transfer (LMMCT) states based in part on the extended Au...Au...Au...Au interactions.     

Tunneling currents that increase with molecular elongation

We present a model molecular system with an unintuitive transport-extension behavior in which the tunneling current increases with forced molecular elongation. The molecule consists of two complementary aromatic units (1,4-anthracenedione and 1,4-anthracenediol) hinged via two ether chains and attached to gold electrodes through thiol-terminated alkenes. The transport properties of the molecule as it is mechanically elongated in a single-molecule pulling setting are computationally investigated using a combination of equilibrium molecular dynamics simulations of the pulling with gDFTB computations of the transport properties in the Landauer limit. Contrary to the usual exponential decay of tunneling currents with increasing molecular length, the simulations indicate that upon elongation electronic transport along the molecule increases 10-fold. The structural origin of this inverted trend in the transport is elucidated via a local current analysis that reveals the dual role played by H-bonds in both stabilizing π-stacking for selected extensions and introducing additional electronic couplings between the complementary aromatic rings that also enhance tunneling currents across the molecule. The simulations illustrate an inverted electromechanical single-molecule switch that is based on a novel class of transport-extension behavior that can be achieved via mechanical manipulation and highlight the remarkable sensitivity of conductance measurements to the molecular conformation.     

Electronic structure of a low-spin heme/Cu peroxide complex: spin-state and spin-topology contributions to reactivity

This study details the electronic structure of the heme–peroxo–copper adduct {[(F8)Fe(DCHIm)]-O2-[Cu(AN)]}+ (LS(AN)) in which O2(2–) bridges the metals in a μ-1,2 or “end-on” configuration. LS(AN) is generated by addition of coordinating base to the parent complex {[(F8)Fe]-O2-[Cu(AN)]}+ (HS(AN)) in which the O2(2–) bridges the metals in an μ-η2:η2 or “side-on” mode. In addition to the structural change of the O2(2–) bridging geometry, coordination of the base changes the spin state of the heme fragment (from S = 5/2 in HS(AN) to S = 1/2 in LS(AN)) that results in an antiferromagnetically coupled diamagnetic ground state in LS(AN). The strong ligand field of the porphyrin modulates the high-spin to low-spin effect on Fe–peroxo bonding relative to nonheme complexes, which is important in the O–O bond cleavage process. On the basis of DFT calculations, the ground state of LS(AN) is dependent on the Fe–O–O–Cu dihedral angle, wherein acute angles (<~150°) yield an antiferromagnetically coupled electronic structure while more obtuse angles yield a ferromagnetic ground state. LS(AN) is diamagnetic and thus has an antiferromagnetically coupled ground state with a calculated Fe–O–O–Cu dihedral angle of 137°. The nature of the bonding in LS(AN) and the frontier molecular orbitals which lead to this magneto-structural correlation provide insight into possible spin topology contributions to O–O bond cleavage by cytochrome c oxidase.     

Recent advances in understanding blue copper proteins

The type 1 (T1) or blue Cu (BC) proteins are a highly studied group of electron transfer (ET) active sites in bioinorganic chemistry. In this review, we cover several more recent results which extend the understanding of the geometric and electronic structure of these interesting Cu ET sites. Spectroscopic methods in tandem with density functional theory (DFT) and time dependent-DFT (TD-DFT) calculations have been used in studies of S → Se variants as well as a series of metal-varied model complexes (M = Mn²⁺ → Zn²⁺). The ligand and metal perturbations further defined the origins of the unique spectral features of BC proteins. These unique spectral features show different temperature dependencies in different T1 sites, and contrasts drawn between their behaviors define the role of the protein in tuning the geometric and electronic structure of the BC site for function. This has been termed the ‘entatic’ or ‘rack-induced’ state in bioinorganic chemistry.     

Urea oxidation electrocatalysis on nickel hydroxide: the role of disorder

Journal of Solid State Electrochemistry - The urea oxidation reaction (UOR) is an important challenge in electrocatalysis, in the context of electrolyzers, fuel cells, medical sensing, and...     

8‐(2‐Bromo‐3‐methoxy‐3‐methylbutyl)‐7‐methoxycoumarin

The title compound, C₁₆H₁₉BrO₄, is a derivative of osthol, isolated from the seeds of Imperatoria Osthruthium. The structure was solved in space group P, with two mol­ecules in the asymmetric unit, and was refined to a final R factor of 0.064. The two mol­ecules in the asymmetric unit differ in the orientation of their brominated substituent group. The benzo­pyran ring displays aromatic character. The packing of the mol­ecules in the lattice is mainly due to C—H⋯O hydrogen bonds.     

Electronic structure and reactivity of high-spin iron--alkyl- and--pterinperoxo complexes

The spectroscopic properties and electronic structure of the four-coordinate high-spin [FeIII(L3)(OOtBu)]+ complex (1; L3 = hydrotris(3-tert-butyl-5-isopropyl-1-pyrazolyl)borate; tBu = tert-butyl) are investigated and compared to the six-coordinated high-spin [Fe(6-Me3TPA)(OHx)(OOtBu)]x+ system (TPA = tris(2-pyridylmethyl)amine, x = 1 or 2) studied earlier [Lehnert, N.; Ho, R. Y. N.; Que, L., Jr.; Solomon, E. I. J. Am. Chem. Soc. 2001, 123, 12802-12816]. Complex 1 is characterized by Raman features at 889 and 830 cm-1 which are assigned to the O-O stretch (mixed with the symmetric C-C stretch) and a band at 625 cm-1 that corresponds to nu(Fe-O). The UV-vis spectrum shows a charge-transfer (CT) transition at 510 nm from the alkylperoxo pi v* (v = vertical to C-O-O plane) to a d orbital of Fe(III). A second CT is identified from MCD at 370 nm that is assigned to a transition from pi h* (h = horizontal to C-O-O plane) to an Fe(III) d orbital. For the TPA complex the pi v* CT is at 560 nm while the pi h* CT is to higher energy than 250 nm. These spectroscopic differences between four- and six-coordinate Fe(III)-OOR complexes are interpreted on the basis of their different ligand fields. In addition, the electronic structure of Fe-OOPtn complexes with the biologically relevant pterinperoxo ligand are investigated. Substitution of the tert-butyl group in 1 by pterin leads to the corresponding Fe(III)-OOPtn species (2), which shows a stronger electron donation from the peroxide to Fe(III) than 1. This is related to the lower ionization potential of pterin. Reduction of 2 by one electron leads to the Fe(II)-OOPtn complex (3), which is relevant as a model for potential intermediates in pterin-dependent hydroxylases. However, in the four-coordinate ligand field of 3, the additional electron is located in a nonbonding d orbital of iron. Hence, the pterinperoxo ligand is not activated for heterolytic cleavage of the O-O bond in this system. This is also evident from the calculated reaction energies that are endothermic by at least 20 kcal/mol.     

Preparation of block copolymer vesicles in solution

Block copolymer vesicles can be prepared in solution from a variety of different amphiphilic systems. Polystyrene‐block‐poly(acrylic acid), polystyrene‐block‐poly(ethylene oxide), and many other block copolymer systems can produce vesicles of a wide range of sizes; those in the range of 100–1000 nm have been explored extensively. Different factors, such as the absolute and relative block lengths, the presence of additives (ions, homopolymers, and surfactants), the water content in the solvent mixture, the nature and composition of the solvent, the temperature, and the polydispersity of the hydrophilic block, provide control over the types of vesicles produced. Their high stability, resistance to many external stimuli, and ability to package both hydrophilic and hydrophobic compounds make them excellent candidates for use in the medical, pharmaceutical, and environmental fields. © 2004 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 42: 923–938, 2004