Temperature-dependent vibrational spectroscopic studies of pure and gold nanoparticles dispersed 4-n-Hexyloxy-4’-cyanobiphenyls

Raman spectra of pure and 2 wt.% gold nanoparticles (GNPs) dispersed liquid crystalline compound 4-n-Hexyloxy-4?- cyanobiphenyls (6OCB) has been recorded as a function of temperature from room temperature (solid crystal) to 80°C (isotropic liquid) in the spectral region of 500–2500 cm^?1. The variation of Raman spectral parameters (peak positions and line width) with temperature is used to explain the changes in molecular alignment and its effect on inter-/intra-molecular interactions at crystal-Nematic (K-N) transition. To understand the change in molecular structure during phase transition and on account of dispersion of gold nanoparticles in pure liquid crystal more precisely, two spectral regions 1000–1500 cm^?1 and 1500–2400 cm^?1 have been selected separately. From the detailed study, it is concluded that increased orientational/vibrational freedom of the molecules as well as delocalisation of electron clouds results in the spectral anomalies at K-N transition. The geometrical structure of 6OCB was optimised using density functional theory (DFT) and theoretical Raman spectra have been obtained for comparison with experimental spectra. The tentative assignment of vibrational modes observed in our region of study was calculated based on potential energy distribution (PED) using vibrational energy distribution analysis (VEDA) calculation.     

A theoretical characterization of reactions of HOOO radical with guanine: formation of 8-oxoguanine

Hydrogen trioxide (HOOO) radical and other polyoxides of general formula, RO_nR (where R stands for hydrogen, other atoms or groups and n?≥?3), are believed to be key intermediates in atmospheric chemistry and biological oxidation reactions. In this contribution, DFT calculations using M06-2X density functional and the 6-31G(d,p) and 6-311+G(d,p) basis sets have been carried out to study different reactions of HOOO radical with guanine such as addition of HOOO radical at the C2, C4, C5, and C8 sites of guanine, abstraction of hydrogen atoms (H1, H2a, and H8) of guanine, and the mechanisms of oxidation of guanine with HOOO radical yielding 8-oxoguanine(a highly mutagenic derivative of guanine) and its radical in gas phase and aqueous media. The polarizable continuum model (PCM) has been used for solvation calculations in aqueous media. Our calculations reveal that the C8 site of guanine is the most reactive site for addition of HOOO radical, and adduct formed at this site would be appreciably stable. The rate constant (\( =\frac{K_bT}{h}{e}^{-\frac{\Delta {E}^b}{RT}} \)) at the C8 site is found to be 6.07?×?10⁷ (2.89?×?10⁷) s^?1 at the M06-2X/6-311+G(d,p) level of theory in gas phase (aqueous media). The calculated barrier energy and heat of formation of hydrogen abstraction reactions show that HOOO radical would not abstract hydrogen atoms of guanine. Oxidation of guanine with HOOO radical can occur following two schemes (Scheme 1 and Scheme 2). It is found that formation of 8-oxoguanine radical via Scheme 1 would predominate over formation of 8-oxoguanine via Scheme 2, in a reaction of HOOO radical and guanine. Thus, HOOO radical can be treated as a member of reactive oxygen species (ROS) which play key roles in biological oxidation reactions, in agreement with previous literature reports.     

Atomic force microscopy measurement of heterogeneity in bacterial surface hydrophobicity

The structure and physicochemical properties of microbial surfaces at the molecular level determine their adhesion to surfaces and interfaces. Here, we report the use of atomic force microscopy (AFM) to explore the morphology of soft, living cells in aqueous buffer, to map bacterial surface heterogeneities, and to directly correlate the results in the AFM force-distance curves to the macroscopic properties of the microbial surfaces. The surfaces of two bacterial species, Acinetobacter venetianus RAG-1 and Rhodococcus erythropolis 20S-E1-c, showing different macroscopic surface hydrophobicity were probed with chemically functionalized AFM tips, terminating in hydrophobic and hydrophilic groups. All force measurements were obtained in contact mode and made on a location of the bacterium selected from the alternating current mode image. AFM imaging revealed morphological details of the microbial-surface ultrastructures with about 20 nm resolution. The heterogeneous surface morphology was directly correlated with differences in adhesion forces as revealed by retraction force curves and also with the presence of external structures, either pili or capsules, as confirmed by transmission electron microscopy. The AFM force curves for both bacterial species showed differences in the interactions of extracellular structures with hydrophilic and hydrophobic tips. A. venetianus RAG-1 showed an irregular pattern with multiple adhesion peaks suggesting the presence of biopolymers with different lengths on its surface. R. erythropolis 20S-E1-c exhibited long-range attraction forces and single rupture events suggesting a more hydrophobic and smoother surface. The adhesion force measurements indicated a patchy surface distribution of interaction forces for both bacterial species, with the highest forces grouped at one pole of the cell for R. erythropolis 20S-E1-c and a random distribution of adhesion forces in the case of A. venetianus RAG-1. The magnitude of the adhesion forces was proportional to the three-phase contact angle between hexadecane and water on the bacterial surfaces.     

Transient electrokinetic transport in a finite length microchannel: currents, capacitance, and an electrical analogy

Numerical simulations with the fluid mechanics based on the unsteady Navier-Stokes equations and the Poisson-Nernst-Planck formulation of electrostatics and ion transport were used to explore the transient transport of charge through a finite length cylindrical microchannel that is driven by a pressure difference. The evolution of the transcapillary potential from a no-flow equilibrium to the steady-state-steady-flow streaming potential was analyzed by following the convection, migration, and net currents. Observations of the unsteady characteristics of the streaming current, electrical resistance, and capacitance led to an electrical analogy. This electrical analogy was made from a current source (to represent convection current), which was placed in parallel with a capacitor (to allow the accumulation of charge) and a resistor (to permit a migration current). A parametric study involving a range of geometries, fluid mechanics, electrostatics, and mass transfer states allowed predictive submodels for the current source, capacitor, and resistor to be developed based on a dimensional analysis.     

Structure of incommensurate gold sulfide monolayer on Au(111)

We develop an atomic-scale model for an ordered incommensurate gold sulfide (AuS) adlayer which has previously been demonstrated to exist on the Au(111) surface, following sulfur deposition and annealing to 450 K. Our model reproduces experimental scanning tunneling microscopy images. Using state-of-the-art Wannier-function-based techniques, we analyze the nature of bonding in this structure and provide an interpretation of the unusual stoichiometry of the gold sulfide layer. The proposed structure and its chemistry have implications for related S-Au interfaces, as in those involved in self-assembled monolayers of thiols on Au substrates.     

Stability and disintegration of ultrathin heptane films in water: molecular dynamics simulations

Molecular dynamics simulations of ultrathin heptane films (less than 5 nm in thickness) in water were conducted to study their stability and disintegration behavior. The density distributions of heptane and water molecules across the film were determined for different equilibrium film thicknesses ranging from 1.5 to 4 nm. The potential energy of the system was computed as a function of the heptane number fraction, and the results were employed to determine the excess energy of mixing of heptane in water. The diffusion coefficients of heptane and water obtained from the MD simulations were also compared with experimental data. A good agreement was found between the heptane self-diffusivity obtained from the MD simulations and its literature reported value. Following an analysis of the equilibrium properties of the heptane films and associated structures, we performed simulations where the shapes of the heptane films were initially perturbed. Different perturbations of these ultrathin films led to formation of various associated structures, including cylindrical rodlike heptane droplets, films with holes, and intact films. The different shapes are formed in systems with the same heptane/water composition. An analysis of this behavior is presented showing the possibility of multiple associated structures with similar total energy in these highly confined systems.     

Microwave assisted synthesis of an unusual dinitro phytochemical

A novel dinitro secondary metabolite, 2-nitro-4-(2^′-nitroethenyl)phenol from a marine source, has been prepared via highly accelerated, microwave assisted, nitration reactions using mild reagents. ipso-Substitution of a carboxy group by a nitro group is discussed.