Synthesis and conformational behavior of pseudopeptides containing δ-azaproline. A cis conformational preference for Xaa1–δ-azaPro bond

δ-Azaproline, a new bis-nitrogen proline surrogate has been used in order to control the conformation of an AA–ΨPro bond. Conformational analysis of Xaa₁–δ-azaPro–Xaa₃ performed by NMR, IR experiments, and molecular modeling revealed a preference for a trans conformation of the Xaa₁–δ-azaPro bond when δ-azaPro is protected by a Boc group. The removal of the Boc protection leads to the establishment of a C₁₀ pseudocycle via a hydrogen bond network favoring the cis conformation of the Xaa₁–δ-azaPro bond.     

1D NMR Homodecoupled 1H Spectra with Scalar Coupling Constants from 2D NemoZS‐DIAG Experiments

A two‐dimensional liquid‐state NMR experiment cleanly separating chemical shifts and scalar couplings information is introduced. This DIAG experiment takes advantage of a drastic reduction of the spectral window in the indirect dimension to be quickly recorded and of a new non‐equidistant modulation of the selective pulse to improve the sensitivity of the broadband homodecoupling Zangger–Sterk sequence element by one order of magnitude. A simple automatic analysis results in 1D spectra displaying singlets and lists of the scalar couplings for first‐order multiplets. This facilitates the analysis of 1D spectra by resolving multiplets based on their differences in chemical shifts and coupling structures.     

Relative stability of η-cyclopentadienyl(olefin)ruthenium cations: The first estimation of the nature of the Ru-olefin bond

Relative stability in coordination of substituted styrene derivatives to [Ru(η-C₅H₅)(dtpe)]⁺ (dtpe = 1,2-bis(di-p-tolylphosphino)-ethane) was determined by NMR spectroscopy to reveal unusually weak substituent dependency of the stability.     

Compensation of the photoelastic birefringence of a polymer by doping with an anisotropic molecule

We report on a method to compensate the photoelastic birefringence of a polymer. In this method, a rod-like molecule that has a polarizability anisotropy was chosen and doped in a polymer. We demonstrated this method by compensating the negative photoelastic birefringence of poly(methylmethacrylate) at a wavelength of 633 nm. Homogeneous doping with 2.2 wt. % of trans-stilbene almost eliminated the photoelastic birefringence of the polymer. The photoelastic coefficient of the synthesized zero-photoelastic birefringence polymer was 0.057×10^-12 Pa^-1. We found that the photoelastic birefringence of poly(methylmethacrylate) was compensated by the motion of trans-stilbene in the polymer by the analysis of the infrared absorption spectrum. PACS 42.70.-a; 42.70.Jk; 78.30.Jw     

NMR methods for studying the structure and dynamics of oncogenic and antihistaminic peptides in biomembranes

We present several applications of both wide-line and magic angle spinning (MAS) solid-state NMR of bicelles in which are embedded fragments of a tyrosine kinase receptor or enkephalins. The magnetically orientable bicelle membranes are shown to be of particular interest for studying the functional properties of lipids and proteins in a state that is very close to their natural environment. Quadrupolar, dipolar and chemical shielding interactions can be used to determine minute alterations of internal membrane dynamics and the orientation of peptides with respect to the membrane plane. MAS of bicelles can in turn lead to high-resolution proton spectra of hydrated membranes. Using deuterium-proton contrast methods one can then obtain pseudo-high-resolution proton spectra of peptides or proteins embedded in deuterated membranes and determine their atomic 3D structure using quasi-conventional liquid-state NMR methods.     

Structure and photochemical properties of (mu-alkoxo)bis(mu-carboxylato)diruthenium complexes with naphthylacetate ligands

Two new dinuclear Ru(III) complexes containing naphthalene moieties, K[Ru2(dhpta)(mu-O2CCH2-1-naph)2] (1) and K[Ru2(dhpta)(mu-O2CCH2-2-naph)2] (2) (H5dhpta = 1,3-diamino-2-hydroxypropane-N,N,N',N'-tetraacetic acid, naph-1-CH2CO2H = 1-naphthylacetic acid, naph-2-CH2CO2H = 2-naphthylacetic acid), were synthesized. Complex 2 crystallized as an orthorhombic system having a space group of Pbca with unit cell parameters a = 10.6200(5) A, b = 20.270(1) A, c = 35.530(2) A, and Z = 8. EXAFS analysis of 1 and 2 in the solid states and in solution clarified that the dinuclear structures of 1 and 2 were kept in DMSO solutions. Variable-temperature magnetic susceptibility data indicated that the two Ru(III) centers are strongly antiferromagnetically coupled as shown by the large coupling constants, J = -581 cm(-1) (1) and -378 cm(-1) (2). In the cyclic voltammograms of 1 and 2, one oxidation peak and two reduction peaks which were assigned to the redox reaction of the ruthenium moieties were observed in DMF. The large conproportionation constants estimated from the reduction potentials of Ru(III)Ru(III) and Ru(III)Ru(II) indicated the great stability of the mixed-valent state. The mixed-valent species [Ru(III)Ru(II)(dhpta)(mu-O2CCH2-R)2](2-) (R = 1-naph (6) and R = 2-naph (7)) were prepared by controlled potential electrolysis of 1 and 2 in DMF. The electronic absorption spectra of 6 and 7 were similar to that of [Ru(III)Ru(II) (dhpta)(mu-O2CCH3)2](2-) which is a typical Class II type mixed-valent complex. The fluorescence decay of 1 and 2 indicated that there are two quenching processes which come from the excimer and monomer states. The short excimer lifetimes of 1 and 2 were ascribed to the energy transfer from the naphthyl moieties to the Ru centers. The different excimer ratio between 1 and 2 suggested that the excimer formation is affected by the conformation of the naphthyl moieties in the diruthenium(III) complexes.     

Assessment of DNA Binding to Human Rad51 Protein by using Quartz Crystal Microbalance and Atomic Force Microscopy: Effects of ADP and BRC4‐28 Peptide Inhibitor

The interaction of human Rad51 protein (HsRad51) with single‐stranded deoxyribonucleic acid (ssDNA) was investigated by using quartz crystal microbalance (QCM) monitoring and atomic force microscopy (AFM) visualization. Gold surfaces for QCM and AFM were modified by electrografting of the in situ generated aryldiazonium salt from the sulfanilic acid to obtain the organic layer Au–ArSO₃H. The Au–ArSO₃H layer was activated by using a solution of PCl₅ in CH₂Cl₂ to give a Au–ArSO₂Cl layer. The modified surface was then used to immobilize long ssDNA molecules. The results obtained showed that the presence of adenosine diphosphate promotes the protein autoassociation rather than nucleation around DNA. In addition, when the BRC4‐28 peptide inhibitor was used, both QCM and AFM confirmed the inhibitory effect of BRC4‐28 toward HsRad51 autoassociation. Altogether these results show the suitability of this modified surface to investigate the kinetics and structure of DNA–protein interactions and for the screening of inhibitors.