Determination of Naphthazarin Derivatives in 16 Alkanna Species by RP-LC Using UV and MS for Detection

As part of our ongoing studies, a new and validated method for analysis of isohexenyl-naphthazarines in Turkish Alkanna species was developed. By using reversed phase material (Synergi MAX RP) it was possible to determine four known isohexenylnaphthazarin-derivatives, namely alkannin, acetylalkannin, deoxyalkannin, and β,β-dimethylacrylalkannin within 25 min in n-hexane extracts of the roots. The quantification of these compounds in 16 Anatolian Alkanna species is described for the first time. In order to assure peak identity LC-MS experiments were performed. Quantitative results revealed that the most dominant compound in the extracts was β,β-dimethylacrylalkannin.     

Enantioselective addition of diethylzinc to aldehydes catalyzed by β‐amino alcohols derived from (1R,2S)‐norephedrine

β‐Amino alcohols derived from (1R,2S)‐norephedrine were synthesized and used as ligands in the catalytic enantioselective diethylzinc addition to benzaldehydes. N‐alkylated (1R,2S)‐norephedrine‐based derivative 3a gave the highest enantioselectivity. The effects of different parameters on the enantioselectivity of the product were investigated. Copyright © 2009 John Wiley & Sons, Ltd.     

Equilibrium free energy estimates based on nonequilibrium work relations and extended dynamics

Jarzynski's relation and the fluctuation theorem have established important connections between nonequilibrium statistical mechanics and equilibrium thermodynamics. In particular, an exact relationship between the equilibrium free energy and the nonequilibrium work is useful for computer simulations. In this paper, we exploit the fact that the free energy is a state function, independent of the pathway taken to change the equilibrium ensemble. We show that a generalized expression is advantageous for computer simulations of free energy differences. Several methods based on this idea are proposed. The accuracy and efficiency of the proposed methods are evaluated with a model problem.     

Synthesis,Spectrothermal Behaviour and Molecular Structure of Aquaorotatotriethanolaminenickel(II) Monohydrate

The aquaorotatotriethanolaminenickel(II) monohydrate, [Ni(HOr)(H₂O)(tea)]·H₂O ( 1 ), was synthesized and characterized by means of elementel analysis, IR and UV‐Vis, spectroscopy, magnetic susceptibility, thermal analysis and X‐ray diffraction techniques. The nickel ion in [Ni(C₅H₂N₂O₄)(H₂O)(N(C₂H₄OH)₃)] is chelated to the deprotonated N3 pyrimidine atom and to the carboxylate oxygen atom of the bidentate orotate dianion, and to the one nitrogen and two oxygen atoms of the tridentate triethanolamine molecule and its octahedral geometry is completed by an aqua ligand. It crystallizes in the monoclinic system, space group P2₁/c with lattice parameters a = 7.1528(5) Å, b = 19.4903(14) Å, c = 11.8085(8) Å, β = 106.237(5)°, V = 1580.55(19) ų, Z = 4. An extensive three dimensional network of O_w‐H…O, N‐H…O and O‐H…O hydrogen bonds, π‐π and π‐ring interactions are responsible for crystal stabilization. The decomposition reaction take places in the temperature range 20‐1000 °C in the static air atmosphere. Thermal decomposition of 1 proceeds in three stages.     

Solvent effect on the synthesis of clarithromycin: A molecular dynamics study

Clarithromycin (6-O-methylerythromycin A) is a 14-membered macrolide antibiotic which is active in vitro against clinically important gram-positive and gram-negative bacteria. The selectivity of the methylation of the C-6 OH group is studied on erythromycin A derivatives. To understand the effect of the solvent on the methylation process, detailed molecular dynamics (MD) simulations are performed in pure DMSO, pure THF and DMSO:THF (1:1) mixture by using the anions at the C-6, C-11 and C-12 positions of 2',4"-[O-bis(TMS)]erythromycin A 9-[O-(dimethylthexylsilyl)oxime] under the assumption that the anions are stable on the sub-nanosecond time scale. The conformations of the anions are not affected by the presence of the solvent mixture. The radial distribution functions are computed for the distribution of different solvent molecules around the 'O-' of the anions. At distances shorter than 5 A, DMSO molecules are found to cluster around the C-11 anion, whereas the anion at the C-12 position is surrounded by the THF molecules. The anion at the C-6 position is not blocked by the solvent molecules. The results are consistent with the experimental finding that the methylation yield at the latter position is increased in the presence of a DMSO:THF (1:1) solvent mixture. Thus, the effect of the solvent in enhancing the yield during the synthesis is not by changing the conformational properties of the anions, but rather by creating a suitable environment for methylation at the C-6 position.     

Gadolinium triflate catalyzed alkylation of pyrroles: efficient synthesis of 3-oxo-2,3-dihydro-1H-pyrrolizine derivatives

Novel 2-alkylated pyrrole derivatives were synthesized regioselectively by Gd(OTf)₃ catalyzed addition reactions of pyrrole to substituted dimethyl 2-benzylidenemalonate derivatives under mild reaction conditions. 2-Alkylated pyrrole derivatives are used for the construction of the 3-oxo pyrrolizine skeleton. Intramolecular cyclization of alkylated pyrrole derivatives afforded new diastereoselective 3-oxo-2,3-dihydro-1H-pyrrolizine derivatives with good to high yields.     

A tetraphenylethene based polarity dependent turn-on fluorescence strategy for selective and sensitive detection of Hg in aqueous medium and in living cells

A turn-on fluorescent chemosensor strategy based on the change in the polarity of aggregation induced emission active tetraphenylethene is presented for the detection of Hg²⁺ in aqueous medium and in living cells. The sensing mechanism involves the formation of nonpolar fluorescent aggregates of tetraphenylethene molecules by elimination of polar moieties of TPE with Hg²⁺ interaction.     

Molecular dynamics study of structure and glass forming ability of Zr<Subscript>70</Subscript>Pd<Subscript>30</Subscript> alloy

In this study, the temperature effects on the structural evolution of theZr₇₀Pd₃₀ binary alloy in the glassy and liquid states werestudied using the molecular dynamics simulations based on the many-body type tight-bindingpotential. We considered the following properties in detail: the temperature dependence ofthe volume, the partial and total pair distribution functions and the simulated glasstransition temperature. The effects of the cooling rates on the glass transitiontemperature were examined. The Wendt-Abraham parameter was calculated to determine theglass transition temperature of Zr₇₀Pd₃₀ glassy alloy. The pair analysis technique ofHoneycutt-Andersen was applied to define local atomic arrangements produced from moleculardynamics simulations. The results show that the icosahedral ordering in glassy state hasbeen composed during quenching period, and the simulated glass transition temperature andthe total pair distribution functions are in good agreement with the experimental data.     

Zinc(II) and Mercury(II) Complexes of Pyrazole‐Based NNN‐Type Ligands: Syntheses,X‐ray Structures,Thermal Analyses and DFT Studies

Monomeric zinc(II) and mercury(II) complexes containing tripodal nitrogen donor ligand 2,6‐bis(3,4,5‐trimethyl‐N‐pyrazolyl)pyridine (btmpp) were synthesized, and characterized by elemental and spectroscopic (IR, UV/Vis) analyses, TG‐DTA and single‐crystal X‐ray diffraction studies. X‐ray analyses of the complexes [Zn(btmpp)Cl₂] ( 2 ) and [Hg(btmpp)(SCN)₂] ( 3 ) showed that both structures crystallize in space group P2₁/c with a = 7.9722(6), b = 18.3084(13), c = 13.3117(9) Å and Z = 4 for 2 and a = 8.7830(3), b = 21.1489(7), c = 12.0682(4) Å and Z = 4 for 3 . Both monomeric units contain pentacoordinate metal ions in distorted square‐pyramidal arrangement. The structures of complexes 2 and 3 were also computed with DFT methods at B3LYP/LanL2DZ level and are in good agreement with the experimental values obtained from X‐ray analysis. The NPa charge distributions, HOMO–LUMO gaps, and dipole moments for 1 , 2 , and 3 were also reported. Natural bond orbital analyses were performed to reveal local charges and charge transfers in 1 , 2 , and 3 .