Assembling metal phosphonates in the presence of monodentate-terminal and bidentate-bridging pyridine ligands. Use of non-covalent and covalent-coordinate interactions to build polymeric metal-phosphonate architectures

The cubic transition metal phosphonates [(t)BuPO3M(2-apy)]4 (M= Zn (1), Co (2)), whose core resembles the D4R SBU of zeolites, have been synthesized from a reaction between the corresponding metal acetate, tert-butylphosphonic acid and 2-aminopyridine (2-apy) at room temperature. X-Ray structure determination reveals that the molecules of 1 and 2, which crystallize in the tetragonal I4(1)/a space group with crystallographically imposed 4 symmetry, form a 3-D supramolecular assembly aided by N-H...O hydrogen bonding. When the same reaction was carried out by using a bridging bidentate Lewis base such as 4,4'-bipyridine, insoluble precipitate is obtained for both zinc and cobalt. In the case of other metal salts such as copper, manganese and nickel, however, one-dimensional polymeric compounds such as [M((t)BuPO3H)2(4,4'-bipy)(H2O)2]n (M= Cu (3), Mn (4)), [(Ni(4,4'-bipy)(H2O)4)((t)BuPO3H)2(H2O)]n (5) have been isolated. The solid-state structures of 3-5 have been determined by single crystal X-ray diffraction studies. Compounds 3 and 4 are isostructural and crystallize in the triclinic P1 space group with two phosphonate ligands coordinated to the metal centers in a [1.100] fashion, whereas in the case of compound 5, the polymeric backbone is formed by Ni-4,4'-bipy units and the phosphonate anions show no bonding interaction to the metal. The 1-D polymeric chains of 3-5 organize in the solid-state as 3-D supramolecular assemblies with the aid of extensive hydrogen bonding interaction between coordinated water molecules and P-OH or P=O groups of the phosphonate ligands.     

Synthesis,crystal structure and biological activities of dehydroacetic acid complexes of Ru(II) and Ru(III) containing PPh3/AsPh3

A series of Ru(II) and Ru(III) complexes of the types [RuX(CO)(EPh₃)₂L] (X = H, E = P; X = Cl, E = P or As) and [RuX₂(EPh₃)₂L] (X = Cl, E = P or As; X = Br, E = As, L = monoanion of dehydroacetic acid) have been synthesized in order to explore their biological activities, such as DNA-binding and antibacterial activity. The complexes were characterized by analytical and spectroscopic techniques. The crystal and molecular structure of [RuCl₂(AsPh₃)₂(L)] has been determined by single crystal XRD. The cyclic voltammograms of the complexes in acetonitrile displayed either quasi-reversible or irreversible redox couples based on the metal centre. The ligand, dehydroacetic acid (DHA) and its metal complexes were tested against five pathogenic bacteria. Absorption titration and cyclic voltammetric studies revealed that the complexes interact with Herring Sperm ds DNA through different binding modes to different extents.     

Species and density of implant surface chemistry affect the extent of foreign body reactions

Implant-associated fibrotic capsule formation presents a major challenge for the development of long-term drug release microspheres and implantable sensors. Since material properties have been shown to affect in vitro cellular responses and also to influence short-term in vivo tissue responses, we have thus assumed that the type and density of surface chemical groups would affect the degree of tissue responses to microsphere implants. To test this hypothesis, polypropylene particles with different surface densities of -OH and -COOH groups, along with the polypropylene control (-CH2 groups) were utilized. The influence of functional groups and their surface densities on fibrotic reactions were analyzed using a mice subcutaneous implantation model. Our comparative studies included determination and correlation of the extents of fibrotic capsule formation, cell infiltration into the particles, and recruitment of CD11b+ inflammatory cells for all of the substrates employed. We have observed major differences among microspheres coated with different surface functionalities. Surfaces with -OH surface groups trigger the strongest responses, while -COOH-rich surfaces prompt the least tissue reactions. However, variation of the surface density of either functional group has a relatively minor influence on the extent of fibrotic tissue reactions. The present results show that surface functionality can be used as a powerful tool to alter implant-associated fibrotic reactions and, potentially, to improve the efficacy and function of drug-delivery microspheres, implantable sensors, and tissue-engineering scaffolds.     

Synthesis of amphiphilic poly(methyl methacrylate‐ b‐ethylene oxide) copolymers from monohydroxy telechelic poly(methyl methacrylate) as macroinitiator

The synthesis of well‐defined poly(methyl methacrylate)‐block‐poly(ethylene oxide) (PMMA‐b‐PEO) dibock copolymer through anionic polymerization using monohydroxy telechelic PMMA as macroinitiator is described. Living anionic polymerization of methyl methacrylate was performed using initiators derived from the adduct of diphenylethylene and a suitable alkyllithium, either of which contains a hydroxyl group protected with tert‐butyldimethylsilyl moiety in tetrahydrofuran (THF) at ?78 °C in the presence of LiClO₄. The synthesized telechelic PMMAs had good control of molecular weight with narrow molecular weight distribution (MWD). The ¹H NMR and MALDI‐TOF MS analysis confirmed quantitative functionalization of chain‐ends. Block copolymerization of ethylene oxide was carried out using the terminal hydroxyl group of PMMA as initiator in the presence of potassium counter ion in THF at 35 °C. The PMMA‐b‐PEO diblock copolymers had moderate control of molecular weight with narrow MWD. The ¹H NMR results confirm the absence of trans‐esterification reaction of propagating PEO anions onto the ester pendants of PMMA. The micellation behavior of PMMA‐b‐PEO diblock copolymer was examined in water using ¹H NMR and dynamic light scattering. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 2132–2144, 2008     

Development and assessment of scoring functions for protein identification using PMF data

PMF is one of the major methods for protein identification using the MS technology. It is faster and cheaper than MS/MS. Although PMF does not differentiate trypsin-digested peptides of identical mass, which makes it less informative than MS/MS, current computational methods for PMF have the potential to improve its detection accuracy by better use of the information content in PMF spectra. We developed a number of new probability-based scoring functions for PMF protein identification based on the MOWSE algorithm. We considered a detailed distribution of matching masses in a protein database and peak intensity, as well as the likelihood of peptide matches to be close to each other in a protein sequence. Our computational methods are assessed and compared with other methods using PMF data of 52 gel spots of known protein standards. The comparison shows that our new scoring schemes have higher or comparable accuracies for protein identification in comparison to the existing methods. Our software is freely available upon request. The scoring functions can be easily incorporated into other proteomics software packages.     

Decolorization of textile dye effluent by genetically improved bacterial strains

Synthetic dyes are released into the environment from textile industrial effluents. The discharge of this colored wastewater into rivers and lakes leads to a reduction in sunlight penetration in natural water bodies, which, in turn, decreases both photosynthetic activity and dissolved oxygen concentration and is toxic to living beings. Bacterial isolates are optimized for growth and biomass production before using them for decolorizing dye effluent. The bacterial isolates Bacillus sp. 1 and Bacillus sp. 2 were employed at different percentages by volume with standard nutrient concentration. Of these bacterial isolates Bacillus sp. 2 recorded maximum color reduction. The pH and electrical conductivity (EC) were reduced in the decolorized effluent, and a reduction in biologic oxygen demand, chemical oxygen demand, total suspended solids, and total dissolved solids (TDS) were also observed.     

Ultrasound assisted enhancement in natural dye extraction from beetroot for industrial applications and natural dyeing of leather

There is a growing demand for eco-friendly/non-toxic colorants, specifically for health sensitive applications such as coloration of food and dyeing of child textile/leather garments. Recently, dyes derived from natural sources for these applications have emerged as an important alternative to potentially harmful synthetic dyes and pose need for suitable effective extraction methodologies. The present paper focus on the influence of process parameters for ultrasound assisted leaching of coloring matter from plant materials. In the present work, extraction of natural dye from beetroot using ultrasound has been studied and compared with static/magnetic stirring as a control process at 45 °C. The influence of process parameters on the extraction efficiency such as ultrasonic output power, time, pulse mode, effect of solvent system and amount of beetroot has been studied. The use of ultrasound is found to have significant improvement in the extraction efficiency of colorant obtained from beetroot. Based on the experiments it has been found that a mixture of 1:1 ethanol–water with 80 W ultrasonic power for 3 h contact time provided better yield and extraction efficiency. Pulse mode operation may be useful in reducing electrical energy consumption in the extraction process. The effect of the amount of beetroot used in relation to extraction efficiency has also been studied. Two-stage extraction has been studied and found to be beneficial for improving the yield for higher amounts of beetroot. Significant 8% enhancement in % yield of colorant has been achieved with ultrasound, 80 W as compared to MS process both using 1:1 ethanol–water. The coloring ability of extracted beet dye has been tested on substrates such as leather and paper and found to be suitable for dyeing. Ultrasound is also found to be beneficial in natural dyeing of leather with improved rate of exhaustion. Both the dyed substrates have better color values for ultrasonic beet extract as inferred from reflectance measurement. Therefore, the present study clearly offers efficient extraction methodology from natural dye resources such as beetroot with ultrasound even dispensing with external heating. Thereby, also making eco-friendly non-toxic dyeing of fibrous substances a potential viable option.     

Molecular structure and vibrational spectra of 3-amino-5-hydroxypyrazole by density functional method

In this work, we report a combined experimental and theoretical study on molecular and vibrational structure of 3-amino-5-hydroxypyrazole (3A5HP). The Fourier transform infrared and Fourier transform Raman spectra of 3A5HP were recorded in the solid phase. The molecular geometry and vibrational frequencies of 3A5HP in the ground state have been calculated by using the density functional method B3LYP with basis sets, 6-311++G(d,p), 6-311+G(3df,2p), 6-311+G(3df,2pd), CC-pVDZ, aug-CC-pVDZ and CC-pVTZ. The optimized geometrical parameters obtained by B3LYP show best agreement with the experimental values. The theoretical spectrograms for FT-IR and FT-Raman spectra of the title molecule have been constructed.     

A priori investigation of subgrid correlation of mixture fraction and progress variable in partially premixed flames

Subgrid correlation of mixture fraction, Z, and progress variable, c, is investigated using direct numerical dimulation (DNS) data of a hydrogen lifted jet flame. Joint subgrid behaviour of these two scalars are obtained using a Gaussian-type filter for a broad range of filter sizes. A joint probability density function (JPDF) constructed using single-snapshot DNS data is compared qualitatively with that computed using two independent β-PDFs and a copula method. Strong negative correlation observed at different streamwise locations in the flame is captured well by the copula method. The subgrid contribution to the Z–c correlation becomes important if the filter is of the size of the laminar flame thickness or larger. A priori assessment for the filtered reaction rate using the flamelet approach with independent β-PDFs and correlated JPDF is then performed. Comparison with the DNS data shows that both models provide reasonably good results for a range of filter sizes. However, the reaction rate computed using copula JPDF is found to have a better agreement with the DNS data for large filter sizes because the subgrid Z–c correlation effect is included.     

Sequential escapes: onset of slow domino regime via a saddle connection

We explore sequential escape behaviour of coupled bistable systems under the influence of stochastic perturbations. We consider transient escapes from a marginally stable “quiescent” equilibrium to a more stable “active” equilibrium. The presence of coupling introduces dependence between the escape processes: for diffusive coupling there is a strongly coupled limit (fast domino regime) where the escapes are strongly synchronised while for intermediate coupling (slow domino regime) without partially escaped stable states, there is still a delayed effect. These regimes can be associated with bifurcations of equilibria in the low-noise limit. In this paper, we consider a localized form of non-diffusive (i.e. pulse-like) coupling and find similar changes in the distribution of escape times with coupling strength. However, we find transition to a slow domino regime that is not associated with any bifurcations of equilibria. We show that this transition can be understood as a codimension-one saddle connection bifurcation for the low-noise limit. At transition, the most likely escape path from one attractor hits the escape saddle from the basin of another partially escaped attractor. After this bifurcation, we find increasing coefficient of variation of the subsequent escape times.