The role of basic amino acids in the molecular recognition of hydroxyapatite by statherin using solid state NMR

Organisms use proteins such as statherin to control the growth of hydroxyapatite (HAP), which is the principal component of teeth and bones. Though much emphasis has been placed on the acidic character of these proteins, the role of their basic amino acids is not well understood. In this work, solid state nuclear magnetic resonance was used to probe the interaction of the basic arginine side chains with the HAP surface. Statherin samples were individually labeled at each arginine site, and the distance to the surface was measured using the Rotational Echo DOuble Resonance (REDOR) technique. The results indicate a strong coupling between the R9 and R10 residues and the phosphorus atoms on the surface, with internuclear distances of 4.62 ± 0.29 Å and 4.53 ± 0.16 Å, respectively. Conversely, results also indicate weak coupling between R13 and the surface, suggesting this residue is more removed from the surface than R9 and R10. Combining these results with previous data, a new model for the molecular recognition of HAP by statherin is constructed.     

DFT based computational study on the excited state intramolecular proton transfer processes in o-hydroxybenzaldehyde

Potential energy (PE) curves for the intramolecular proton transfer in the ground (GSIPT) and excited (ESIPT) states of o-hydroxybenzaldehyde (OHBA) were studied using DFT-B3LYP/6-31G(d) and TD-DFT-B3LYP/6-31G(d) level of theory, respectively. Our calculations suggest the non-viability of ground state intramolecular proton transfer in this compound. Excited states PE calculations support the ESIPT process in OHBA. The contour PE diagram and the variation of oscillator strength along the proton transfer co-ordinate support the dual emission in OHBA. Our calculations also support the experimental observations of Nagaoka et al. [S. Nagaoka, U. Nagashima, N. Ohta, M. Fujita, T. Takemura, J. Phys. Chem. 92 (1988) 166], i.e. normal emission of the title compound comes from S(2) state and the red-shifted proton transfer band appears from the S(1) state. ESIPT process has also been explained in terms of HOMO and LUMO electron density of the enol and keto tautomer of OHBA and from the potential energy surfaces.     

Quantitative phenomenological model of the BOLD contrast mechanism

Different theoretical models of the BOLD contrast mechanism are used for many applications including BOLD quantification (qBOLD) and vessel size imaging, both in health and disease. Each model simplifies the system under consideration, making approximations about the structure of the blood vessel network and diffusion of water molecules through inhomogeneities in the magnetic field created by deoxyhemoglobin-containing blood vessels. In this study, Monte-Carlo methods are used to simulate the BOLD MR signal generated by diffusing water molecules in the presence of long, cylindrical blood vessels. Using these simulations we introduce a new, phenomenological model that is far more accurate over a range of blood oxygenation levels and blood vessel radii than existing models. This model could be used to extract physiological parameters of the blood vessel network from experimental data in BOLD-based experiments. We use our model to establish ranges of validity for the existing analytical models of Yablonskiy and Haacke, Kiselev and Posse, Sukstanskii and Yablonskiy (extended to the case of arbitrary time in the spin echo sequence) and Bauer et al. (extended to the case of randomly oriented cylinders). Although these models are shown to be accurate in the limits of diffusion under which they were derived, none of them is accurate for the whole physiological range of blood vessels radii and blood oxygenation levels. We also show the extent of systematic errors that are introduced due to the approximations of these models when used for BOLD signal quantification.     

Formation of stable ionized complexes between coinage metal containing superhalogens and moderately reactive molecules: a DFT approach

Structural Chemistry - The possibility of ionization of six moderately reactive molecules (Y), namely silicon dioxide (SiO2), ammonia (NH3), water (H2O), carbon dioxide (CO2), chloroform (CHCl3)...