Sequence-specific cleavage of RNA by designed ribozymes

Abstract

Ribozymes that distinguish a single base change in RNA were synthesized and used to specifically cleave c-Ha-ras messenger RNA. Using phosphorothioate containing oligonucleotide substrates, we have shown that Mg²⁺ binds to the pro-R oxygen of the phosphate and that the RNA cleavage reaction occurs via an in-line mechanism. Oligoribonucleotides containing a modified nucleoside are described.     

Recent topics of the metallacycles composed of the heavier group 14 elements

This Letter reviews recent advance of metallacycles with chelating Si-, Ge-, and Sn-ligands. Dehydrogenative bond-forming reactions of organosilanes, -germanes, and -stannanes promoted by Pd and Pt complexes afford four- and five-membered metallacycles composed of heavier group 14 elements. It has a couple of advantages such as easier preparation of the starting compounds and reaction procedure than the common metathesis reactions of dianions with transition metal dihalide complexes. These metallacycles are regarded as possible intermediates in catalytic dehydrocoupling polymerizations or as convenient precursors to form discrete oligomers.     

1,4‐Bis[2‐(4‐ferrocenylphenyl)ethynyl]anthraquinone from synchrotron X‐ray powder diffraction

The title compound, [Fe₂(C₅H₅)₂(C₄₀H₂₂O₂)] or 1,4‐(FcPh)₂Aq [where FcPh is 2‐(4‐ferrocenylphenyl)ethynyl and Aq is anthraquinone], was synthesized in an attempt to obtain a new solvent‐incorporating porous material with a large void space. Thermodynamic data for 1,4‐(FcPh)₂Aq show a phase transition at approximately 430 K. The crystal structure of solvent‐free 1,4‐(FcPh)₂Aq was determined at temperatures of 90, 300 and 500 K using synchrotron powder diffraction data. A direct‐space method using a genetic algorithm was employed for structure solution. Charge densities calculated from observed structure factors by the maximum entropy method were employed for model improvement. The final models were obtained through multistage Rietveld refinements. In both phases, the structures of which differ only subtly, the planar Aq fragments are stacked alternately in opposite orientations, forming a one‐dimensional column. The FcPh arms lie between the stacks and fill the remaining space, leaving no voids. C—H...π interactions between the Ph and Fc fragments mediate crystal packing and stabilization.     

Internal radiocesium contamination of adults and children in Fukushima 7 to 20 months after the Fukushima NPP accident as measured by extensive whole-body-counter surveys

The Fukushima Dai-ichi NPP accident contaminated the soil of densely-populated regions in Fukushima Prefecture with radioactive cesium, which poses significant risks of internal and external exposure to the residents. If we apply the knowledge of post-Chernobyl accident studies, internal exposures in excess of a few mSv/y would be expected to be frequent in Fukushima.Extensive whole-body-counter surveys (n = 32,811) carried out at the Hirata Central Hospital between October, 2011 and November, 2012, however show that the internal exposure levels of residents are much lower than estimated. In particular, the first sampling-bias-free assessment of the internal exposure of children in the town of Miharu, Fukushima, shows that the ¹³⁷Cs body burdens of all children (n = 1,383, ages 6–15, covering 95% of children enrolled in town-operated schools) were below the detection limit of 300 Bq/body in the fall of 2012. These results are not conclusive for the prefecture as a whole, but are consistent with results obtained from other municipalities in the prefecture, and with prefectural data.     

RAFT synthesis of an amphiphilic block copolymer bearing chlorin rings in the hydrophobic segment and its application in photodynamic therapy

RAFT polymerization of styrene (St) in the presence of 5,10,15,20‐tetrakis(pentafluorophenyl)porphyrin (TFPP) was conducted using 4‐cyano‐4‐(thiobenzoyl)thiopentanoic acid as a chain‐transfer agent and azobisisobutyronitrile as an initiator at 60 °C. The resulting polymer exhibited a chlorin‐like UV‐vis spectrum, which indicated that the polymer possessed a reduced TFPP structure. Furthermore, an SEC trace recorded using UV‐vis detector (λ = 410 nm), which selectively detected the TFPP‐incorporated polymer, shifted toward higher molecular mass as the polymerization progressed. This evidence indicated that TFPP acted as a vinylene‐type monomer, such as maleimide, to form a copolymer, namely, poly(St‐co‐TFPP). The mole fraction of TFPP units was estimated to be 0.74 × 10^?3, which was close to that in the feed (1 × 10^?3). Chain extension of poly(St‐co‐TFPP) with polyethylene glycol monomethyl ether acrylate (PEGA) was performed to afford the amphiphilic block copolymer poly(St‐co‐TFPP)‐b‐poly(PEGA). The degrees of polymerization of St and PEGA were determined to be 64 and 75, respectively. Poly(St‐co‐TFPP)‐b‐poly(PEGA) formed micelles following dialysis. The median diameter of the micelles in solution was determined to be 16 nm by DLS. The photocytotoxicity of the micelle solution was evaluated in a human glioblastoma cell line (U251) and an N‐methyl‐N'‐nitro‐N‐nitrosoguanidine‐induced mutant of a rat murine RGM‐1 gastric carcinoma mucosal cell line (RGK‐1). © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2017 , 55 , 3395–3403     

Quarkonia at Finite T: An Approach Based On QCD Sum Rules and the Maximum Entropy Method

Quarkonium spectral functions at finite temperature are studied, making use of a recently developed method of analyzing QCD sum rules by the maximum entropy method. This approach enables us to directly obtain the spectral function from the sum rules, without having to introduce any specific assumption about its functional form. QCD sum rules for heavy quarkonia incorporate finite temperature effects in form of changing values of the various gluonic condensates that appear in the operator product expansion. These changes depend on the energy density and pressure at finite temperature, which we extract from quenched lattice QCD calculations. As a result, it is found that the charmonium ground states of both S-wave and P-wave channels dissolve into the continuum already at temperatures around or slightly above the critical temperature T _c , while the bottomonium states are less influenced by temperature effects, surviving up to about 2.5 T _c or higher for S-wave and about 2.0 T _c for P-wave states.     

False Detection of Cyanide Ion in Photographic Processing Waste Solutions Using Standardized Reference Methods

Abstract

Although cyanide compounds are not incorporated in photographic processing solutions, false detection of cyanide ion is often encountered during the determination of total cyanide by various standardized methods such as ISO, ANSI and JIS. Various organic compounds and nitrogen compounds in the processing solutions were examined because of this false detection. The results suggest that hydrogen cyanide is formed by a reaction between these compounds during the distillation process for the separation of total cyanide, even though ISO, ANSI and JIS were used. The results support the following three mechanisms of cyanide formation involved in the process: (1) Hydroxylammonium salts reacts with another ingredient, formaldehyde, to form formaldoxime, which then decomposes to HCN. (2) Hydroxylammonium is oxidized by air to form nitrite ion, which subsequently reacts with organic compounds such as aminocarboxylic acids and aromatic amines (the colour-developing agent) to form HCN. (3) Potassium permanganate oxidizes aromatic amines to form HCN.     

Upgrade of the nuclear resonant scattering beamline, BL09XU in SPring-8

An Upgrade of the nuclear resonant scattering beamline, BL09XU in SPring-8 has been conducted. A liquid nitrogen cooled high-heat load monochromator was installed and a 2nd experimental hutch was constructed. The instruments installed in the hutch allow for a variety of sample conditions. Newly developed high-resolution monochromators with better stability including the back scattering geometry monochromator have opened up the easy access to more isotopes and more precise measurements.