Differences in first neighbor orientation behind the anomalies in the low and high density trans-1,2-dichloroethene liquid

Trans-1,2-dichloroethene (HClC=CClH) has several structural and dynamic anomalies between its low- and high-density liquid, previously found through neutron scattering experiments. To explain the microscopic origin of the differences found in those experiments, a series of molecular dynamics simulations were performed. The analysis of molecular short-range order shows that the number of molecules in the first neighbor shell is 12 for the high-density liquid and 11 for the low-density one. It also shows that the angular position of the center of mass of the first neighbor is roughly the same although the molecular orientation is not. In both liquids the first neighbor and its reference molecule arrange mainly in two configurations, each being the most probable in one of the liquids. First neighbors in the configuration that predominates in the high-density liquid tend to locate themselves closer to the reference molecule, an evidence that they are more strongly bonded. This arrangement facilitates a better packing of the rest of molecules in the first neighbor shell so that on average an additional molecule can be included, and is proposed to be the key in the explanation of all the observed anomalies in the characteristics of both liquids.     

Color modeling of protein optical probes

We present a strategy for modeling optical probes within heterogeneous environments of restricted dimension. The method is based on a multiphysics approach comprising sequential structure modeling by means of hybrid Car-Parrinello molecular dynamics and property modeling by means of quantum mechanics/molecular mechanics response theory. For demonstration we address the structural and optical properties of nile red within the β-lacto globulin protein. We consider the cases with the probe situated on the surface or within the cavity of the protein, or embedded in a water solvent. We find the absorption properties of the probe to be highly dependent on its position relative to the protein. Structural rearrangements of the optical probe are found to contribute significantly to these environmental effects.     

A programmable microfluidic cell array for combinatorial drug screening

We describe the development of a fully automatic and programmable microfluidic cell culture array that integrates on-chip generation of drug concentrations and pair-wise combinations with parallel culture of cells for drug candidate screening applications. The device has 64 individually addressable cell culture chambers in which cells can be cultured and exposed either sequentially or simultaneously to 64 pair-wise concentration combinations of two drugs. For sequential exposure, a simple microfluidic diffusive mixer is used to generate different concentrations of drugs from two inputs. For generation of 64 pair-wise combinations from two drug inputs, a novel time dependent variable concentration scheme is used in conjunction with the simple diffusive mixer to generate the desired combinations without the need for complex multi-layer structures or continuous medium perfusion. The generation of drug combinations and exposure to specific cell culture chambers are controlled using a LabVIEW interface capable of automatically running a multi-day drug screening experiment. Our cell array does not require continuous perfusion for keeping cells exposed to concentration gradients, minimizing the amount of drug used per experiment, and cells cultured in the chamber are not exposed to significant shear stress continuously. The utility of this platform is demonstrated for inducing loss of viability of PC3 prostate cancer cells using combinations of either doxorubicin or mitoxantrone with TRAIL (TNF-alpha Related Apoptosis Inducing Ligand) either in a sequential or simultaneous format. Our results demonstrate that the device can capture the synergy between different sensitizer drugs and TRAIL and demonstrate the potential of the microfluidic cell array for screening and optimizing combinatorial drug treatments for cancer therapy.     

A microfluidic device for high throughput bacterial biofilm studies

Bacteria are almost always found in ecological niches as matrix-encased, surface-associated, multi-species communities known as biofilms. It is well established that soluble chemical signals produced by the bacteria influence the organization and structure of the biofilm; therefore, there is significant interest in understanding how different chemical signals are coordinately utilized for community development. Conventional methods for investigating biofilm formation such as macro-scale flow cells are low-throughput, require large volumes, and do not allow spatial and temporal control of biofilm community formation. Here, we describe the development of a PDMS-based two-layer microfluidic flow cell (μFC) device for investigating bacterial biofilm formation and organization in response to different concentrations of soluble signals. The μFC device contains eight separate microchambers for cultivating biofilms exposed to eight different concentrations of signals through a single diffusive mixing-based concentration gradient generator. The presence of pneumatic valves and a separate cell seeding port that is independent from gradient-mixing channels offers complete isolation of the biofilm microchamber from the gradient mixer, and also performs well under continuous, batch or semi-batch conditions. We demonstrate the utility of the μFC by studying the effect of different concentrations of indole-like biofilm signals (7-hydroxyindole and isatin), either individually or in combination, on biofilm development of pathogenic E. coli. This model can be used for developing a fundamental understanding of events leading to bacterial attachment to surfaces that are important in infections and chemicals that influence the biofilm formation or inhibition.     

Enhanced photocatalytic activity of cobalt-doped CeO2 nanorods

In this paper, CeO₂ and cobalt-doped CeO₂ nanorods synthesized by surfactant free co-precipitation method. The microstructures of the synthesized products were characterized by XRD, FESEM and TEM. The structural properties of the grown nanorods have been investigated using electron diffraction and X-ray diffraction. High resolution transmission electron microscopy studies show the polycrystalline nature of the Co-doped cerium oxide nanorods with a length of about 300?nm and a diameter of about 10?nm were produced. The X-ray Photoelectron spectrum confirms the presence of cobalt in cerium oxide nanorods. From BET, the specific surface area of the CeO₂ (Co-doped) nanostructures (131 m²?g^??) is found to be significantly higher than that of pure CeO₂ (52 m²?g^??). The Co-doped cerium nanorods exhibit an excellent photocatalytic performance in rapidly degrading azodyes acid orange 7 (AO7) in aqueous solution under UV illumination.     

Control of adhesion via internally pressurized subsurface microchannels

While pressure sensitive adhesives in general consist of a layer of viscoelastic glue sandwiched between two adherents, we explore here the design of an adhesive embedded with microchannels which remain either open to atmosphere or pressurized to different positive and negative pressures. We subject these layers to indentation by a rigid cylinder such that in addition to adhesion between the indenter and the adhesive surface, the inner walls of the channels too self-adhere; during retraction of the indenter, these surfaces debond, but at a different load, thus resulting in hysteresis. When these channels are pressurized to different extents, the contact areas of various interfaces vary, so also the resultant hysteresis. For experiments with constant depth of indentation, the hysteresis increases and attains maxima at an intermediate value of the internal pressure inside the channels. The hysteresis increases also with the skin thickness of the adhesive over the channels. These results show that subsurface channels in an adhesive allow active manipulation of adhesion over a large range via coupled effect of geometry of channels, their surface characteristics, and the pressure inside.     

Nanotube-grafted polyacrylamide hydrogels for electrophoretic protein separation

Multiwalled carbon nanotube-modified polyacrylamide gels have been employed for the electrophoretic separation of proteins. Two approaches are compared in this investigation, one using nanotubes only as fillers inside the gel matrix and the other using nanotubes as catalyst for polymerization of acrylamide. In both the cases, polymerization of acryl-amide/bisacrylamide has been carried out in situ in the presence of nanotubes dispersed in the gel buffer containing monomer and cross-linker. In the former case, initiator and catalyst have been added after ultrasonication of nanotubes in the gel buffer mixture where the nanotubes play the role of filler. On the other hand, the second approach precludes use of catalyst and involves addition of initiator alone during ultrasonication of nanotubes in the gel buffer containing monomer and cross-linker, which leads to the formation of nanotube-grafted gel after 25 min. When nanotubes are used as a catalyst instead of N,N,N',N'-tetramethylethylenediamine, pore size distribution of the gel matrix and linearity of molecular weight calibration plots are found to be improved. In addition, other issues associated with the use of an external catalyst like handling the moisture-sensitive and corrosive reagent and associated irreproducibility are addressed in this approach.     

Novel fusion method for direct determination of uranium in ilmenite,rutile, columbite,tantalite, and xenotime minerals by laser induced fluorimetry

A simple, rapid, effective and eco-friendly decomposition method is developed for the determination of uranium (U) by laser induced fluorimetry (LIF). The salts of sodium di-hydrogen phosphate (NaH₂PO₄) and di-sodium hydrogen phosphate (Na₂HPO₄) were used in the ratio of 1:1 (phosphate flux) for the decomposition and dissolution of refractory, non silicate minerals like ilmenite, rutile, columbite, tantalite, and xenotime. The effect of associated matrix elements (Ti, Fe, Nb, Ta, Mn and Y present in the sample) on quenching of uranyl fluorescence was studied. The flux used for the sample decomposition has several advantages. In the reported sample decomposition methods, α-hydroxy acids are used as complexing agents to prevent hydrolysis and to get clear and stable solution. This solution can not be directly used for U determination by LIF as α-hydroxy acids quench uranyl fluorescence, hence separation is required. In the present method no such separation is required. The flux itself acts as fluorescence enhancing reagent and buffer (maintaining the optimum pH of 7.1 ± 0.1). The fused melt of the flux mixture, when disintegrated in water, gives clear and stable solution and has high tolerance for most of inorganic quenchers compared to reported phosphate buffers. Also just by dilution (due to high sensitivity of LIF), the concentration of quenchers could be brought down well within the tolerance limit. The accuracy and precision of the method was evaluated by analyzing Certified Reference Materials (IGS-33 and IGS-34 of Institute of Geological Sciences, UK) and Synthetic Minerals. The accuracy of the data is further evaluated by comparing with standard decomposition methods. The results are well within the experimental error. The RSD of the method is ±10% (n = 6) at 10 ppm level for Ilmenite and for other minerals the RSD of the method is ±5% (n = 6) at 50 ppm level. The method is being routinely applied to various refractory samples received from Rare Metal and Rare Earth Investigations for determination of uranium by laser fluorimetry.     

Synthesis of Co‐doped CeO2 nanorods modified glassy carbon electrode for electrochemical detection of nitrobenzene

CeO₂ nanoparticles (CNPs), Co‐doped CeO₂ nanoparticles (CCNPs) and Co‐doped CeO₂ nanorods (CCNRs) were synthesized by simple co‐precipitation method and explored their sensing behaviour towards nitrobenzene. XRD and TEM analysis confirmed the presence of cubic fluorite structure of the CNPs, CCNPs and CCNRs. EDX analysis confirmed the presence of Cobalt in CeO₂ nanorods. The electrochemical sensing of nitrobenzene was carried out using CCNRs‐modified glassy carbon (GC) electrodes by means of cyclic voltammetric (CV) technique. The peak current (I_p) was found to be linearly co‐related to nitrobenzene (NB) concentration (R² = 0.9665). A substantial enhancement in cathodic peak current (C1), and sensitivity (∼738.8 nA/μM) was observed for the CCNRs‐modified GC electrode than those of CNPs and CCNPs‐modified electrodes.     

A New Sodium Thioborate Fast Ion Conductor: Na3B5S9

We report a new sodium fast-ion conductor, Na₃B₅S₉, that exhibits a high Na ion total conductivity of 0.80 mS cm⁻¹ (sintered pellet; cold-pressed pellet=0.21 mS cm⁻¹). The structure consists of corner-sharing B₁₀S₂₀ supertetrahedral clusters, which create a framework that supports 3D Na ion diffusion channels. The Na ions are well-distributed in the channels and form a disordered sublattice spanning five Na crystallographic sites. The combination of structural elucidation via single crystal X-ray diffraction and powder synchrotron X-ray diffraction at variable temperatures, solid-state nuclear magnetic resonance spectra and ab initio molecular dynamics simulations reveal high Na-ion mobility (predicted conductivity: 0.96 mS cm⁻¹) and the nature of the 3D diffusion pathways. Notably, the Na ion sublattice orders at low temperatures, resulting in isolated Na polyhedra and thus much lower ionic conductivity. This highlights the importance of a disordered Na ion sublattice—and existence of well-connected Na ion migration pathways formed via face-sharing polyhedra—in dictating Na ion diffusion.