Catalytic Mechanism of a Heme and Tyrosyl Radical-Containing Fatty Acid α-(Di)oxygenase

The steady-state catalytic mechanism of a fatty acid α-(di)oxygenase is examined, revealing that a persistent tyrosyl radical (Tyr379(?)) effects O(2) insertion into C(α)-H bonds of fatty acids. The initiating C(α)-H homolysis step is characterized by apparent rate constants and deuterium kinetic isotope effects (KIEs) that increase hyperbolically upon raising the concentration of O(2). These results are consistent with H(?) tunneling, transitioning from a reversible to an irreversible regime. The limiting deuterium KIEs increase from ～30 to 120 as the fatty acid chain is shortened from that of the native substrate. In addition, activation barriers increase in a manner that reflects decreased fatty acid binding affinities. Anaerobic isotope exchange experiments provide compelling evidence that Tyr379(?) initiates catalysis by H(?) abstraction. C(α)-H homolysis is kinetically driven by O(2) trapping of the α-carbon radical and reduction of a putative peroxyl radical intermediate to a 2(R)-hydroperoxide product. These findings add to a body of work which establishes large-scale hydrogen tunneling in proteins. This particular example is novel because it involves a protein-derived amino acid radical.     

Influence of electrostatic and chemical heterogeneity on the electric-field-induced destabilization of thin liquid films

A numerical model for thin liquid film (<100 nm) drainage in the presence of an external electric field is developed. Long-wave theory is applied to approximate and simplify the governing equations. A spatiotemporal film morphology evolution equation thus obtained is then solved using a combination of finite difference to resolve the spatial dimensions and an adaptive time step ODE solver for the temporal propagation. The effect of fluid properties, namely, viscosity and surface tension, on the film drainage time is observed for a homogeneous electric field, which leads to random dewetting spots. Electrically heterogeneous fields, achieved by modeling electrodes with various periodic patterns, are explored to identify their effect on the drainage time and behavior. Finally, the chemical heterogeneity of the substrate is coupled with the periodic electric heterogeneity to understand the implications of combined heterogeneity. It is observed that the introduction of any heterogeneity results in faster drainage of the film when compared to that of the homogeneous field. In all cases, the thin film is drained, leaving submicrometer-scale structures at the interface. Well-controlled surface patterns are found on the application of periodic heterogeneity. This study effectively demonstrates the immense potential of electrically induced thin film drainage as a means for faster de-emulsification and for the creation of ordered submicrometer-scale surface patterns on soft materials.     

Interaction of a "nido"-ruthenium terpyridylamine complex with charged elongated micellar scaffolds

Influence on ionic surfactants by a specially designed terpyridylamine ligand and the ruthenium(II) complex formed with it has been studied in aqueous solution. The ligand coordinates to Ru(2+) into an octahedral geometry in such a way that the final form takes a "nido" or nest-like structure. The substitution on the pyridinyl moiety is kept at the ortho position to acquire the specified geometry. Similar complexes have been reported to have anti-tumor properties and thus the ruthenium complexes can effectively replace platinum complexes that serve the same purpose but with certain drawbacks. The "nido" geometry was chosen to minimize the cytotoxicity that creeps in when para substituents of the pyridinyl moiety are used. The latter variety forms a dendridic scaffold. In presence of both the ligand and the complex, ionic surfactants form elongated aggregates. The surface charge of those aggregates decides the nature of interaction of the ligand and the complex formed therefore. Interaction with anionic surfactant scaffold is found to be stronger than the cationic one.     

Close to Optimal Cell Sensing Ensures the Robustness of Tissue Differentiation Process: The Avian Photoreceptor Mosaic Case

The way that progenitor cell fate decisions and the associated environmental sensing are regulated to ensure the robustness of the spatial and temporal order in which cells are generated towards a fully differentiating tissue still remains elusive. Here, we investigate how cells regulate their sensing intensity and radius to guarantee the required thermodynamic robustness of a differentiated tissue. In particular, we are interested in finding the conditions where dedifferentiation at cell level is possible (microscopic reversibility), but tissue maintains its spatial order and differentiation integrity (macroscopic irreversibility). In order to tackle this, we exploit the recently postulated Least microEnvironmental Uncertainty Principle (LEUP) to develop a theory of stochastic thermodynamics for cell differentiation. To assess the predictive and explanatory power of our theory, we challenge it against the avian photoreceptor mosaic data. By calibrating a single parameter, the LEUP can predict the cone color spatial distribution in the avian retina and, at the same time, suggest that such a spatial pattern is associated with quasi-optimal cell sensing. By means of the stochastic thermodynamics formalism, we find out that thermodynamic robustness of differentiated tissues depends on cell metabolism and cell sensing properties. In turn, we calculate the limits of the cell sensing radius that ensure the robustness of differentiated tissue spatial order. Finally, we further constrain our model predictions to the avian photoreceptor mosaic.     

Synthesis and study of optical and electrical characteristics of a hybrid structure of single wall carbon nanotubes and silver nanoparticles

Ag nanoparticles of average size 20 nm have been deposited on SWCNT surfaces following a very lucid wet chemical process. The SWCNT/Ag nanohybrid material has been characterized using scanning electron microscopy (SEM), energy dispersive X-ray analysis (EDAX), X-ray diffraction (XRD) analysis and Raman spectroscopy. Both optical and electrical properties of the hybrid have been studied. The hybrid material has been synthesized at 60 °C and treated to higher temperatures. About three-fold increase in photoluminescence (PL) emission intensity has been achieved when the hybrid sample has been treated to 500 °C. DC conductivity at varying temperatures from 77–473 K has been studied. The conductivity of Ag-decorated SWCNTs increased up to 1.76 times of that of pristine SWCNT at a low temperature of 180 K. This hybrid material can find wide application as conducting filler in polymer composite which other filler materials seldom possess.     

Study of a periodically forced magnetohydrodynamic system using Floquet analysis and nonlinear Galerkin modelling

Nonlinear Dynamics - We present a detailed study of Rayleigh–Bénard magnetoconvection with periodic gravity modulation and uniform vertical magnetic field. Linear stability analysis is...     

Activation of Protic,Hydridic and Apolar E−H Bonds by a Boryl-Substituted GeII Cation

The synthesis of a boryl-substituted germanium(II) cation, [Ge{B(NDippCH)₂}(IPrMe)]⁺, (Dipp=2,6-diisopropylphenyl) featuring a supporting N-heterocyclic carbene (NHC) donor, has been explored through chloride abstraction from the corresponding (boryl)(NHC)GeCl precursor. Crystallographic studies in the solid state and UV/Vis spectra in fluorobenzene solution show that this species dimerizes under such conditions to give [(IPrMe){(HCNDipp)₂B}Ge=Ge{B(NDippCH)₂}(IPrMe)]²⁺ (IPrMe = 1,3-diisopropyl-4,5-dimethylimidazolin-2-ylidene), which can be viewed as an imidazolium-functionalized digermene. The dimer is cleaved in the presence of donor solvents such as [D₈]thf or [D₅]pyridine, to give monomeric adducts of the type [Ge{B(NDippCH)₂}(IPrMe)(L)]⁺. In the case of the thf adduct, the additional donor is shown to be sufficiently labile that it can act as a convenient in situ source of the monomeric complex [Ge{B(NDippCH)₂}(IPrMe)]⁺ for oxidative bond-activation chemistry. Thus, [Ge{B(NDippCH)₂}(IPrMe)(thf)]⁺ reacts with silanes and dihydrogen, leading to the formation of Ge^IV products, whereas the cleavage of the N−H bond in ammonia ultimately yields products containing C−H and B−N bonds. The facile reactivity observed in E−H bond activation is in line with the very small calculated HOMO–LUMO gap (132 kJ mol⁻¹).