Studies on drug–DNA complexes,adriamycin–d‐(TGATCA)2 and 4′‐epiadriamycin–d‐(CGATCG)2, by phosphorus‐31 nuclear magnetic resonance spectroscopy

The complexes of adriamycin–d‐(TGATCA)₂ and 4′‐epiadriamycin–d‐(CGATCG)₂ are studied by one‐ and two‐dimensional ³¹P nuclear magnetic resonance spectroscopy (NMR) at 500 MHz in the temperature range 275–328 K and as a function of drug to DNA ratio (0.0–2.0). The binding of drug to DNA is clearly evident in ³¹P? ³¹P exchange NOESY spectra that shows two sets of resonances in slow chemical exchange. The phosphate resonances at the intercalating steps, T1pG2/C1pG2 and C5pA6/C5pG6, shift downfield up to 1.7 ppm and that at the adjacent step shift downfield up to 0.7 ppm, whereas the central phosphate A3pT4 is relatively unaffected. The variations of chemical shift with drug to DNA ratio and temperature as well as linewidths are different in each of the two complexes. These observations reflect change in population of B_I/B_II conformation, stretching of backbone torsional angle ζ, and distortions in O? P? O bond angles that occur on binding of drug to DNA. To the best of our knowledge, there are no solution studies on 4′‐epiadriamycin, a better tolerated drug, and binding of daunomycin or its analogue to d‐(TGATCA)₂ hexamer sequence. The studies report the use of ³¹P NMR as a tool to differentiate various complexes. The specific differences may well be the reasons that are responsible for different antitumor action of these drugs due to different binding ability and distortions in DNA. Copyright © 2009 John Wiley & Sons, Ltd.     

Coexistent Fluid-Phase Equilibria in Biomembranes with Bending Elasticity

The theory of fluid surfaces with elastic resistance to bending is applied to coexistent phase equilibria in biomembranes composed of lipid bilayers. A simplified version of the model is used to simulate the necking and budding of closed vesicles.      

Polarographic behaviour of zinc in acetate buffer

Summary Zinc may be determined polarographically in acetate buffered solutions of P_H 4 to 5.6.

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Zusammenfassung Die polarographische Bestimmung von Zink ist möglich in mit Acetat gepufferten Lösungen vom P_H 4 bis 5,6.

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Résumé On peut doser le zinc par polarographie dans des solutions de p_H 4 à 5,6 tamponnées à l'acétate.

     

Integral equation formulation for buoyancy-driven convection problems

An integral equation formulation for buoyancy-driven convection problems is developed and illustrated. Buoyancy-driven convection in a bounded cylindrical geometry with a free surface is studied for a range of aspect ratios and Nusselt numbers. The critical Rayleigh number, the nature of the cellular motion, and the heat transfer enhancement are computed using linear theory. Green's functions are used to convert the linear problem into linear Fredholm integral equations. Theorems are proved which establish the properties of the eigenvalues and eigenfunctions of the linear integral operator which appears in these equations.     

Properties of vortices in the self-similar turbulent jet

Instantaneous, two-dimensional velocity measurements were conducted in the axial plane of a self-similar turbulent axisymmetric jet. The velocity fields were high-pass filtered to expose the vortical structures. An automated method was used to identify the radial and axial coordinates of the vortex centers and rotational sense, and to measure their size, circulation, vorticity, and energy. New insights into turbulent jets are obtained by plotting statistical distributions for vortex properties as functions of Reynolds number and radial position. While the probability of finding a vortex is uniform up to the edge of the jet, the strongest eddies in the high-pass filtered field occur near the jet axis. The average circulation is directly proportional to the vortex size. The Reynolds number strongly affects the average vorticity, circulation, and energy of the eddies. However, the normalized curves show a good collapse implying that the jet is indeed self-similar. Results for the left and right half-planes of the jet are also presented. Interestingly, we find that contrary to customary drawings of jet flows, a substantial number of both clockwise and counter-clockwise rotating eddies exist on both sides of the jet axis, with almost equal numbers of oppositely rotating vortices close to the jet axis. Further, the disparity in the number of oppositely rotating eddies in each half-plane increases with the eddy size. Nevertheless, these results are consistent with the well-known radial vorticity distribution of axisymmetric jets.     

A simple and efficient method for solvent-free iodination of hydroxylated aromatic aldehydes and ketones using iodine and iodic acid by grinding method

<正>Green,mild and efficient iodination of hydroxylated aromatic aldehydes and ketones using iodine and iodic acid in the solidstate by grinding under solvent-free conditions at room temperature.This method provides several advantages such as environmentally friendly,short reaction times,high yields,non-hazardous and simple work-up procedure.     

Determination of amoxapine and nortriptyline in blood plasma and serum by salt-assisted liquid-liquid microextraction and high-performance liquid chromatography

A new, selective and sensitive method has been developed for the determination of tricyclic antidepressant drugs, amoxapine and nortriptyline, in human blood plasma and serum, involving their reaction with allyl isothiocyanate and extraction of thiourea derivatives with water-miscible organic solvent acetonitrile. The phase separation was effected by addition of ammonium sulphate, a process called salt-assisted liquid-liquid microextraction. The extract was analyzed by HPLC with UV detection at 254?nm. The method has been optimized for derivatization reaction time and temperature, solvent for extraction, and salt for solvent phase separation. Under the optimal conditions, a linear calibration graph was obtained between the amount of drug and the peak area of thiourea derivatives in the range of 0.002-20?mg/L drugs. The correlation coefficient and limit of detection values for amoxapine and nortriptyline in serum/plasma samples were in the range of 0.9953-0.9999 and 0.46-0.58?μg/L, respectively. The recovery in spiking experiments ranged, respectively, 75-88% (RSD 3.4-7.2%) and 79-97% (RSD 3.7-7.9%) for the two drugs.     

Anti-ulcer activity of Smithia conferta in various animal

Smithia conferta Sm. (Leguminasae), is a commonly used plant in Indian traditional medicine. In the current study anti-ulcer activity of its petroleum ether, alcohol and aqueous extracts of leaves were investigated using different animal models. All extracts were also subjected to phytochemical analysis and their toxic potential. Petroleum ether extract was found to contain steroids; alcohol extract revealed the presence of isoflavonoids, alkaloids and carbohydrates; while aqueous extract was found to contain amino acids, carbohydrates and flavonoids. S. conferta aqueous and alcoholic extracts were found to be non-toxic up to 5000 mg/kg dose level while petroleum ether extract was safe only up to a dose of 2000 mg/kg after single dose administration of the extracts.During confirmation of the claimed anti-ulcer activity, treatment with aqueous and alcoholic extracts showed significant reduction in ulcer index, free acidity as well as total acidity in pylorus ligated rats. However, petroleum ether extract showed relatively less profound reduction in all these indices. The anti-ulcer activity observed in aqueous extract treatment group was nearly equivalent to the standard group.     

Sugarcane proteomics: Establishment of a protein extraction method for 2‐DE in stalk tissues and initiation of sugarcane proteome reference map

Sugarcane is an important commercial crop cultivated for its stalks and sugar is a prized commodity essential in human nutrition. Proteomics of sugarcane is in its infancy, especially when dealing with the stalk tissues, where there is no study to date. A systematic proteome analysis of stalk tissue yet remains to be investigated in sugarcane, wherein the stalk tissue is well known for its rigidity, fibrous nature, and the presence of oxidative enzymes, phenolic compounds and extreme levels of carbohydrates, thus making the protein extraction complicated. Here, we evaluated five different protein extraction methods in sugarcane stalk tissues. These methods are as follows: direct extraction using lysis buffer (LB), TCA/acetone precipitation followed by solubilization in LB, LB containing thiourea (LBT), and LBT containing tris, and phenol extraction. Both quantitative and qualitative protein analyses were performed for each method. 2‐DE analysis of extracted total proteins revealed distinct differences in protein patterns among the methods, which might be due to their physicochemical limitations. Based on the 2‐D gel protein profiles, TCA/acetone precipitation‐LBT and phenol extraction methods showed good results. The phenol method showed a shift in pI values of proteins on 2‐D gel, which was mostly overcome by the use of 2‐D cleanup kit after protein extraction. Among all the methods tested, 2‐D cleanup‐phenol method was found to be the most suitable for producing high number of good‐quality spots and reproducibility. In total, 30 and 12 protein spots commonly present in LB, LBT and phenol methods, and LBT method were selected and subjected to eLD‐IT‐TOF‐MS/MS and nESI‐LC‐MS/MS analyses, respectively, and a reference map has been established for sugarcane stalk tissue proteome. A total of 36 nonredundant proteins were identified. This is a very first basic study on sugarcane stalk proteome analysis and will promote the unexplored areas of sugarcane proteome research.