Developing novel activity-based fluorescent probes that target different classes of proteases

In this article, we report the design and synthesis of a group of novel activity-based probes that target different protease sub-classes based on their substrate specificities, rather than their enzymatic mechanisms. The feasibility of our approach has been demonstrated by using representative members of the different protease sub-classes.     

Structural and functional analogue of the active site of polysulfide reductase from Wolinella succinogenes

Synthesis of [PPh4]2[Mo(SPh)2(S2C2(CN)2)2] (2) from [PPh4]2[MoO(S2C2(CN)2)2] (1) has been achieved to mimic the postulated [Mo(S)6] core of polysulfide reductase with two thiolates and two bis(ene-dithiolate) ligands. Compound 2 reacts with polysulfide to yield H2S, modeling the function of polysulfide reductase. The facile conversion of 2 back to 1 in moist solvent suggests that the interconversion of the [MoIV = O] and [MoIV - X] (X = O-Ser, S-Cys, Se-Cys) moieties might occur in the DMSO reductase class of enzymes under appropriate hydrophobic/hydrophilic conditions.     

Synthetic,spectroscopic, and structural Studies on Lanthanide Complexes of Diphosphazane Dioxide Ligands

Lanthanide nitrate complexes of diphosphazane dioxides Ph₂P(O)N(Prⁱ)P(O)Ph₂ ( 1 ) and (PhO)₂P(O)N(Me)P(O)(OPh)₂ ( 2 ) have been synthesised and studied by conductometry, IR, multinuclear NMR spectroscopic methods and X-ray diffraction. Ligand 2 is accessible by two different methods, viz., by direct oxidation of the phosp(III)azane ligand or by starting from phosph(V)azane chloro precursor. The structure of 2 is confirmed by X-ray diffraction. Crystallographic data for 2 : Triclinic, Space group P1 , a = 10.078(1), b = 10.575(3), c = 12.364(4) Å, α = 75.70(2)°, α = 75.56(1)°, γ = 77.68(1)°, Z = 2, V = 1 220 ų; structure refined to R_F = 0.0459 on 3 495 data with F > 3σ(F). The diphosphazane dioxide ligand exhibits trans geometry in the solid state. The structure of a lanthanide complex, [Pr(NO₃)₃( 2 )₂] ( 14 ) is also determined by X-ray diffraction. Crystallographic data for 14 : Trigonal, Space group P3₂, a = b = 15.710(2), c = 40.067(2) Å, Z = 6, V = 8 564 ų; structure refined to R_F = 0.0430 on 8 077 data with F > 5σ(F). The two diphosphazane dioxide ligands and the nitrate groups are coordinated to praseodymium in a bidentate chelate fashion. The geometry around the ten coordinated metal is distorted bicapped square antiprism.     

1H NMR, electron paramagnetic resonance, and density functional theory study of dinuclear pentaammineruthenium dicyanamidobenzene complexes

Paramagnetic (1)H NMR and electron paramagnetic resonance (EPR) spectroscopies and density functional theory (DFT) spin density calculations were selectively performed on the [{(NH(3))(5)Ru}(2)(μ-L)](3+,?4+,?5+) complexes, where L is 2,3,5,6-tetrachloro-, 2,5-dichloro-, 2,5-dimethyl-, and unsubstituted 1,4-dicyanamidobenzene dianion, to characterize the electronic structure of these complexes. EPR spectra of the [{(NH(3))(5)Ru}(2)(μ-L)](3+) complexes in N,N'-dimethylformamide at 4 K showed a ruthenium axial signal, and thus the complexes are [Ru(II),L(2-), Ru(III)] mixed-valence systems. DFT spin density calculations of [{(NH(3))(5)Ru}(2)(μ-L)](3+) where L = 1,4-dicyanamidobenzene dianion gave mostly bridging-ligand centered spin distribution for both vacuum and implicit solvent calculations, in poor agreement with EPR, but more realistic results were obtained when explicit electrostatic interactions between solute and solvent were included in modeling. For the [{(NH(3))(5)Ru}(2)(μ-L)](4+) complexes, EPR spectroscopy showed no signal down to 4 K. Nevertheless, solvent-dependent (1)H NMR data and analysis support a [Ru(III),L(2-), Ru(III)] state. Hyperfine coupling constants (A(c)/h) of trans- and cis-ammine and phenyl hydrogens were determined to be 17.2, 3.8, and -1.5 MHz respectively. EPR studies of the [{(NH(3))(5)Ru}(2)(μ-L)](5+) complexes showed a metal-radical axial signal and based on previously published (1)H NMR data, a [Ru(IV),L(2-), Ru(III)] state is favored over a [Ru(III),L(-), Ru(III)] state.     

Double-fold C-H oxygenation of arenes using PyrDipSi: a general and efficient traceless/modifiable silicon-tethered directing group

The efficient Pd-catalyzed double-fold C-H oxygenation of arenes into resorcinols using the newly developed 2-pyrimidyldiisopropylsilyl (PyrDipSi) directing group is described. Its use allows for the sequential introduction of OAc and OPiv groups in a one-pot manner to produce orthogonally protected resorcinol derivatives. The PyrDipSi group is superior to the previously developed 2-pyridyldiisopropylsilyl (PyDipSi) group, as it is efficient for monooxygenation of ortho-substituted arenes. Notably, the PyrDipSi group can be easily installed into arene molecules and can be easily removed or modified after the oxygenation reaction.     

Reversible grafting of α-naphthylmethyl radicals to epitaxial graphene

The Kolbe electrochemical oxidation strategy has been utilized to achieve an efficient quasireversible electrochemical grafting of the α-naphthylmethyl functional group to graphene. The method facilitates reversible bandgap engineering in graphene and preparation of electrochemically erasable organic dielectric films. The picture shows Raman D-band maps of both systems.     

An Efficient One‐pot Three‐component Method for the Synthesis of 5‐Amino‐3‐(2‐oxo‐2H‐chromen‐3‐yl)‐7‐aryl‐7H‐thiazolo[3,2‐a]pyridine‐6,8‐dicarbonitriles

A facile, convenient, and adequate method has been developed for the synthesis of novel 5‐amino‐3‐(2‐oxo‐2H‐chromen‐3‐yl)‐7‐aryl‐7H‐thiazolo[3,2‐a]pyridine‐6,8‐dicarbonitriles ( 6 ) by employing 2‐(4‐(2‐oxo‐2H‐chromen‐3‐yl)thiazol‐2‐yl)acetonitrile ( 3 ) as an important precursor. Initially, we have synthesized the target compounds in a stepwise manner and then approached a tandem method to examine the feasibility of one‐pot method. Subsequently, one‐pot three‐component protocol has been established for the synthesis of title compounds by the reaction of 3 with benzaldehyde and malononitrile in refluxing ethanol engender a new six‐membered thiazolo[3,2‐a] pyridine as a hybrid scaffold. Reaction conditions were optimized for this reaction and a broad substrate scope with various aryl and heteroaryl aldehydes make this protocol very practical, attractive, and worthy. Mechanistic aspects for the formation of these compounds were outlined comprehensively. Characterization of these newly synthesized compounds was achieved by means of IR, ¹H NMR, ¹³C NMR, and HRMS.     

Four‐Center Oxidation State Combinations and Near‐Infrared Absorption in [Ru(pap)(Q)2]n (Q=3,5‐Di‐tert‐butyl‐N‐aryl‐1,2‐benzoquinonemonoimine,pap=2‐Phenylazopyridine)

The complex series [Ru(pap)(Q)₂]ⁿ ([ 1 ]ⁿ–[ 4 ]ⁿ; n=+2, +1, 0, ?1, ?2) contains four redox non‐innocent entities: one ruthenium ion, 2‐phenylazopyridine (pap), and two o‐iminoquinone moieties, Q=3,5‐di‐tert‐butyl‐N‐aryl‐1,2‐benzoquinonemonoimine (aryl=C₆H₅ ( 1⁺ ); m‐(Cl)₂C₆H₃ ( 2⁺ ); m‐(OCH₃)₂C₆H₃ ( 3⁺ ); m‐(tBu)₂C₆H₃ ( 4 ⁺)). A crystal structure determination of the representative compound, [ 1 ]ClO₄, established the crystallization of the ctt‐isomeric form, that is, cis and trans with respect to the mutual orientations of O and N donors of two Q ligands, and the coordinating azo N atom trans to the O donor of Q. The sensitive C? O (average: 1.299(3) Å), C? N (average: 1.346(4) Å) and intra‐ring C? C (meta; average: 1.373(4) Å) bond lengths of the coordinated iminoquinone moieties in corroboration with the N?N length (1.292(3) Å) of pap in 1 ⁺ establish [Ru^III(pap⁰)(Q^.?)₂]⁺ as the most appropriate electronic structural form. The coupling of three spins from one low‐spin ruthenium(III) (t_2g⁵) and two Q^.? radicals in 1 ⁺– 4 ⁺ gives a ground state with one unpaired electron on Q^.?, as evident from g=1.995 radical‐type EPR signals for 1 ⁺– 4 ⁺. Accordingly, the DFT‐calculated Mulliken spin densities of 1 ⁺ (1.152 for two Q, Ru: ?0.179, pap: 0.031) confirm Q‐based spin. Complex ions 1 ⁺– 4 ⁺ exhibit two near‐IR absorption bands at about λ=2000 and 920 nm in addition to intense multiple transitions covering the visible to UV regions; compounds [ 1 ]ClO₄–[ 4 ]ClO₄ undergo one oxidation and three separate reduction processes within ±2.0 V versus SCE. The crystal structure of the neutral (one‐electron reduced) state ( 2 ) was determined to show metal‐based reduction and an EPR signal at g=1.996. The electronic transitions of the complexes 1 ⁿ– 4 ⁿ (n=+2, +1, 0, ?1, ?2) in the UV, visible, and NIR regions, as determined by using spectroelectrochemistry, have been analyzed by TD‐DFT calculations and reveal significant low‐energy absorbance (λ_max>1000 nm) for cations, anions, and neutral forms. The experimental studies in combination with DFT calculations suggest the dominant valence configurations of 1 ⁿ– 4 ⁿ in the accessible redox states to be [Ru^III(pap⁰)(Q^.?)(Q⁰)]²⁺ ( 1 ²⁺– 4 ²⁺)→[Ru^III(pap⁰)(Q^.?)₂]⁺ ( 1 ⁺– 4 ⁺)→[Ru^II(pap⁰)(Q^.?)₂] ( 1 – 4 )→[Ru^II(pap^.?)(Q^.?)₂]^? ( 1 ^?– 4 ^?)→[Ru^III(pap^.?)(Q^2?)₂]^2? ( 1 ^2?– 4 ^2?).     

Fluorescent properties of antioxidant cysteine ABZ analogue

The antioxidant properties of aminobenzamide cysteine (ABZ Cys) makes it a molecule that can potentially be used as a drug in oxidative stress related diseases and delivered in the form of a nanoparticles. Here we have studied the photo-physical properties of ABZ Cys, a fluorescent analogue of a popular antioxidant N-acetyl cysteine (NAC). We have compared ABZ Cys steady state and time-resolved fluorescence properties with its parent compounds anthranilic acid and anthranilamide in solution as well as in poly-vinyl alcohol (PVA) polymer films. ABZ Cys did not show any significant shift in absorption after entrapment in PVA film, but there was a shift towards shorter wavelengths in the emission peak compared to the phosphate buffer solution. Fluorescence lifetimes and quantum yields indicated a slight quenching of ABZ Cys fluorescence in comparison to the cysteine-less parent compounds. We also demonstrated that very low concentrations of ABZ Cys, such as 100 nM, are readily detected by a commercial spectrofluorometer. Hence we have established the possible use of ABZ Cys in biomedical applications.