Quantum chemical study of the hydrogen-bonded HXeOH–H2O complex

A combined MP2 and DFT/B3LYP study of the HXeOH–H₂O complex is presented. These computational methods have been used to extract information on the structural, energetical and vibrational properties of the complex. Additionally, we have applied anharmonic vibrational calculations based on the MP2-computed intermolecular potential energy surface. Large perturbations both on the subunit structures and their fundamental vibrational modes are found upon complexation. Large changes of anharmonicity of the HXeOH subunit reflects the perturbation of the molecule's electronic structure. The computed BSSE-corrected interaction energies are −40.23 and −38.94 kJ mol⁻¹ at the CCSD(T)//MP2 and CCSD(T)//B3LYP levels of theory, respectively. The estimated deformation energy contribution to the interaction energy is about 5%, which is very large compared with classical hydrogen-bonded complexes. The topological analysis of the Electron Localization Function (ELF) was applied to study further the hydrogen-bonded interaction between the two complex partners. The obtained interaction pattern suggests that the interaction between HXeOH and H₂O is a typical hydrogen bond interaction driven mainly by electrostatic interactions.     

Chemometric contributions to the evolution of metabonomics: mathematical solutions to characterising and interpreting complex biological NMR spectra

The pharmaceutical industry has embraced emerging technologies such as genomics, proteomics and metabonomics over the past decade with a view to minimizing attrition and expanding drug development pipelines. Metabonomic technology, based on the multivariate analysis of complex biological profiles generated from spectroscopic instruments, has enabled the construction of successful expert systems for toxicity screening and disease diagnosis. Here we describe the evolution of chemometric and bioinformatic methodologies to accommodate the multi- and megavariate data generated by high resolution NMR spectroscopy of biofluids, tissues and cell cultures and explore their potential role in mining, modeling and predicting metabolic data.     

Metabolic trajectory characterisation of xenobiotic-induced hepatotoxic lesions using statistical batch processing of NMR data

Multivariate statistical batch processing (BP) analysis of 1H NMR urine spectra was employed to establish time-dependent metabolic variations in animals treated with the model hepatotoxin, alpha-naphthylisothiocyanate (ANIT). ANIT (100 mg kg(-1)) was administered orally to rats (n = 5) and urine samples were collected from dosed and matching control rats at time-points up to 168 h post-dose. Urine samples were measured via 1H NMR spectroscopy and partial least squares (PLS) based batch processing analysis was used to interpret the spectral data, treating each rat as an individual batch comprising a series of timed urine samples. A model defining the mean urine profile over the 7 day study period was established, together with model confidence limits (+/-3 standard deviation), for the control group. Samples obtained from ANIT treated animals were evaluated using the control model. Time-dependent deviations from the control model were evident in all ANIT treated animals consisting of glycosuria, bile aciduria, an initial decrease in taurine levels followed by taurinuria and a reduction of tricarboxylic acid cycle intermediate excretion. BP provided an efficient means of visualising the biochemical response to ANIT in terms of both inter-animal variation and net variation in metabolite excretion profiles. BP also allowed multivariate statistical limits for normality to be established and provided a template for defining the sequence of time-dependent metabolic consequences of toxicity in NMR based metabonomic studies.     

Crosslinked poly(ester anhydride)s based on poly(ε‐caprolactone) and polylactide oligomers

Resorbable poly(ester anhydride) networks based on ε‐caprolactone, L ‐lactide, and D,L ‐lactide oligomers were synthesized. The ring‐opening polymerization of the monomers yielded hydroxyl telechelic oligomers, which were end‐functionalized with succinic anhydride and reacted with methacrylic anhydride to yield dimethacrylated oligomers containing anhydride bonds. The degree of substitution, determined by ¹³C NMR, was over 85% for acid functionalization and over 90% for methacrylation. The crosslinking of the oligomers was carried out thermally with dibenzoyl peroxide at 120 °C, leading to polymer networks with glass‐transition temperatures about 10 °C higher than those of the constituent oligomers. In vitro degradation tests, in a phosphate buffer solution (pH 7.0) at 37 °C, revealed a rapid degradation of the networks. Crosslinked polymers based on lactides exhibited high water absorption and complete mass loss in 4 days. In ε‐caprolactone‐based networks, the length of the constituent oligomer determined the degradation: PCL5‐AH, formed from longer poly(ε‐caprolactone) (PCL) blocks, lost only 40% of its mass in 2 weeks, whereas PCL10‐AH, composed of shorter PCL blocks, completely degraded in 2 days. The degradation of PCL10‐AH showed characteristics of surface erosion, as the dimensions of the specimens decreased steadily and, according to Fourier transform infrared, labile anhydride bonds were still present after 90% mass loss. © 2003 The Authors. Journal of Polymer Science Part A: Polymer Chemistry Published by Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 41: 3788–3797, 2003     

Proton affinities of ketones, vicinal diketones and α-keto esters: a computational study

The proton affinities of seven different ketones, vicinal diketones, and α-keto esters (acetophenone, 2,2,2-trifluoroacetophenone, 2,3-butanedione, 1-phenyl-1,2-propanedione, methyl pyruvate, ethyl benzoylformate, and ketopantolactone) have been evaluated theoretically using the conventional ab initio HF and several post-HF methods (MP2, MP4, CCSD), density functional methods with the B3LYP hybrid functional, as well as some ab initio model chemistries [CBS-4M, G2(MP2), and G3(MP2)//B3LYP]. The chemical compounds studied are frequently used substrates in the asymmetric hydrogenation over chirally modified platinum catalysts where the protonation properties of the chiral modifier and the substrates are of great interest. In most cases, the proton affinities (PAs) evaluated with the CCSD/6-311+G(d,p)//B3LYP/TZVP and G2(MP2) methods are in good agreement with the existing experimental ones. However, the previously reported PA of 2,3-butanedione seems to be too high by 10-15 kJ mol⁻¹. The B3LYP/TZVP//B3LYP/TZVP and MP2/6-311+G(d,p)//B3LYP/TZVP model chemistries predict proton affinities that are systematically higher and lower than the experimental PAs, respectively. If proton affinities are evaluated as the average of the PAs calculated with these two theoretical methods a very good agreement with the experimental results is obtained. The mean absolute deviation (MAD) from experiment of this combination method for the PAs of 13 test molecules is 4.0 kJ mol⁻¹. For 9 molecules composed only of first-row atoms the MAD is 2.5 kJ mol⁻¹. The B3LYP/TZVP//B3LYP/TZVP and MP2/6-311+G(d,p)//B3LYP/TZVP methods provide significant savings in computational time and disk space compared to the CCSD/6-311+G(d,p)//B3LYP/TZVP and G2(MP2) models. Therefore, it is suggested that if no experimental or highly accurate theoretical data is available (due to computational cost), the proton affinities of similar compounds as investigated in this paper, can be evaluated with the combination method. For the studied molecules, this method gives the following PAs (in kJ mol⁻¹): 788 (2,3-butanedione, exptl 802); 798 (2,2,2-trifluoroacetophenone, exptl 799); 811 (ketopantolactone); 813 (methyl pyruvate); 825 (1-phenyl-1,2-propanedione); 862 (acetophenone, exptl 861); 865 (ethyl benzoylformate).     

Renormalization Group and Stochastic PDEs

We develop a renormalization group (RG) approach to the study of existence and uniqueness of solutions to stochastic partial differential equations driven by space-time white noise. As an example, we prove well-posedness and independence of regularization for the \({\phi^4}\) model in three dimensions recently studied by Hairer and Catellier and Chouk. Our method is “Wilsonian”: the RG allows to construct effective equations on successive space-time scales. Renormalization is needed to control the parameters in these equations. In particular, no theory of multiplication of distributions enters our approach.     

Atomistic molecular dynamics simulations on the interaction of TEMPO-oxidized cellulose nanofibrils in water

Atomistic molecular dynamics simulations were carried out to obtain information on the rheological, aggregation and disintegration properties of carboxylated (TEMPO-oxidized) cellulose nanofibrils with different functionalization levels. The magnitude of the inter-fibril interaction was quantified for parallel nanofibrils using the umbrella sampling method. The obtained potential of mean force was found highly sensitive to the charge configuration for intermediate functionalization levels. This feature was further studied with an electrostatic model for similar charge configurations and system periodicity as in the case of the molecular dynamics simulations. The electrostatic contribution of the charged surfaces varied from repulsive to attractive depending on the distribution of the carboxylate groups and nearby counter-ions, as well as the distance between the fibrils. The simulated deviations from average behavior for single fibrils in both models suggest heterogeneity in their aggregation and disintegration behavior. This was seen in disintegration experiments, where the differences in disintegration energy and in the structural variation qualitatively agreed with the model predictions. As to aggregation behavior, the studied case with parallel fibrils reflects the upper boundary of the repulsive interaction.     

Deswelling of microfibril bundles in drying wood studied by small-angle neutron scattering and molecular dynamics

Cellulose - Structural changes of cellulose microfibrils and microfibril bundles in unmodified spruce cell wall due to drying in air were investigated using time-resolved small-angle neutron...     

A combined NMR, DFT, and X-ray investigation of some cinchona alkaloid O-ethers

Structures and conformational behavior of several cinchona alkaloid O-ethers in the solid state (X-ray), in solution (NMR and DFT), and in the gas phase (DFT) were investigated. In the crystal, O-phenylcinchonidine adopts the Open(3) conformation similar to cinchonidine, whereas the O-methyl ether derivatives of both cinchonidine and cinchonine are packed in the Closed(1) conformation. Dynamic equilibria in solutions of the alkaloids were revealed by combined experimental-theoretical spin simulation/iteration techniques for the first time. In the (1)H NMR spectra in CDCl3 and toluene-d8 at room temperature, Closed(1) conformation was observed for the O-silyl ethers as a separate set of signals. For O-methyl ether derivatives Closed(1) could be separated only at -30 degrees C in CDCl3 or toluene-d8 and for O-phenylcinchonidine at -70 degrees C in CDCl3/CD2Cl2. The ratio between the Closed(2) and Open(3) conformers was estimated by analyzing the vicinal coupling constant (3)J(H9,H8) at ambient and low temperatures. The observed conformational equilibria of O-(tert-butyldimethylsilyl)cinchonidine in CDCl 3 and toluene-d8 are in good agreement with the theoretically estimated equilibrium populations of the conformations according to Boltzmann statistics. The conformational equilibria of four cinchona alkaloid O-ether solutes in CDCl3 and toluene-d8 are discussed in the light of their relevance to the mechanism of 1-phenyl-1,2-propanedione (PPD) hydrogenation over cinchona alkaloid modified heterogeneous platinum catalysts. It was demonstrated that the conformation found to be abundant in the liquid phase has no direct correlation with the enantioselectivity of the PPD hydrogenation reaction.     

Fast and Tunable Phosphorescence from Organic Ionic Crystals

Crystalline diphosphonium iodides [MeR₂P-spacer-R₂Me]I with phenylene ( 1 , 2 ), naphthalene ( 3 , 4 ), biphenyl ( 5 ) and anthracene ( 6 ) as aromatic spacers, are photoemissive under ambient conditions. The emission colors (λ_em values from 550 to 880 nm) and intensities (Φ_em reaching 0.75) are defined by the composition and substitution geometry of the central conjugated chromophore motif, and the anion-π interactions. Time-resolved and variable-temperature luminescence studies suggest phosphorescence for all the titled compounds, which demonstrate observed lifetimes of 0.46–92.23 μs at 297 K. Radiative rate constants k_r as high as 2.8×10⁵ s⁻¹ deduced for salts 1 – 3 were assigned to strong spin-orbit coupling enhanced by an external heavy atom effect arising from the anion-π charge-transfer character of the triplet excited state. These rates of anomalously fast metal-free phosphorescence are comparable to those of transition metal complexes and organic luminophores that utilize triplet excitons via a thermally activated delayed fluorescence mechanism, making such ionic luminophores a new paradigm for the design of photofunctional and responsive molecular materials.