Universal liposomes: preparation and usage for the detection of mRNA

Dye-encapsulating liposomes can serve as signaling reagents in biosensors and biochemical assays in place of enzymes or fluorophores. Detailed here is the use and preparation of streptavidin-coupled liposomes which offer a universal approach to biotinylated target detection. The universal approach provides two advantages, i.e. only one type of liposome is necessary despite varying target and probe sequences and the hybridization event can take place in the absence of potential steric hindrance occurring from liposomes directly conjugated to probes. One objective of this work was to optimize the one-step conjugation of SRB-encapsulating liposomes to streptavidin using EDC. Liposome, EDC, streptavidin concentrations, and reaction times were varied. The optimal coupling conditions were found to be an EDC:carboxylated lipid:streptavidin molar ratio of 600:120:1 and a reaction time of 15 min. The second goal was to utilize these liposomes in sandwich hybridization microtiter plate-based assays using biotinylated reported probes as biorecognition elements. The assay was optimized in terms of probe spacer length, probe concentration, liposome concentration, and streptavidin coverage. Subsequently, the optimized protocol was applied to the detection of DNA and RNA sequences. A detection limit of 1.7 pmol L⁻¹ and an assay range spanning four orders of magnitude (5 pmol L⁻¹−50 nmol L⁻¹) with a coefficient of variation ≤5.8% was found for synthetic DNA. For synthetic RNA the LOQ was half that of synthetic DNA. A comparison was made to alkaline phosphatase-conjugated streptavidin for detection which yielded a limit of quantitation approximately 80 times higher than that for liposomes in the same system. Thus, liposomes and the optimized sandwich hybridization method are well suited for detecting single-stranded nucleic acid sequences and compares favorably to other sandwich hybridization schemes recently described in the literature. The assay was then used successfully for the clear detection of mRNA amplified by nucleic acid sequence-based amplification (NASBA) isolated from as little as one Cryptosporidium parvum oocyst. The detection of mRNA from oocysts isolated from various water sample types using immunomagnetic separation was also assessed. Finally, to prove the wider applicability and sensitivity of this universal method, RNA amplified from the atxA gene of Bacillus anthracis was detected when the input to the preceding NASBA reaction was as low as 1.2 pg. This highly sensitive liposome-based microtiter plate assay is therefore a platform technology allowing for high throughput and wide availability for routine clinical and environmental laboratory applications.     

Thermal property changes of poly(N-isopropylacrylamide) microgel particles and block copolymers

Investigation of the thermo-reversible properties of different poly(N-isopropyl acrylamide) samples, including microgels and block copolymers, with a combination of methods such as electron microscopy, dynamic light scattering, analytical ultracentrifugation, electrophoresis and ultrasound resonator technology allows comprehensive characterisation of the phase transition. By the combination of methods, it was possible to show that the precipitated polymer phase contains at 40 °C between 40 and 50 vol.% of water. Besides free bulk water, there is also bound water that strongly adheres to the N-isopropyl acrylamide units (about 25 vol.%). Ultrasound resonator technology, which is a non-sizing characterisation method, revealed for the microgel particles two more temperatures (at about 35 and between 40 °C and 50 °C depending on the chemical nature) where characteristic changes in the ultrasound attenuation take place. Moreover, the experimental data suggest that the phase transition temperature is related to surface charge density of the precipitated particles.     

Characterization of poly(methyl methacrylate) nanoparticles prepared by nanoprecipitation using analytical ultracentrifugation,dynamic light scattering,and scanning electron microscopy

Nanoprecipitation represents an effective method for the production of polymeric nanoparticles. This technique was used to prepare nanoparticles from solutions of poly(methyl methacrylate) and its copolymers. Since the regulation of main parameters like particle size, particle size distribution, and molar particle mass is very important for future applications, the stable nanoparticle dispersions were examined by scanning electron microscopy, velocity sedimentation, and dynamic light scattering, whereby advantages and disadvantages of each characterization techniques are discussed. Polydispersities of particle size distributions are determined by the ratio of d_w/d_n, where d_w and d_n are weight‐ and number‐average diameters, respectively. The particle characteristics strongly depend on the chemical structure of the polymers and the way of preparation and, therefore, vary in the studied cases in the range of 6 < d_w < 680 nm, whereas the polydispersity index d_w/d_n changes in the range of 1.02 to 1.40. It is shown that nanoparticles in a desirable size range can be prepared by solvent–nonsolvent methods (dialysis technique or dropping technique). © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 3924–3931, 2010     

Aerogels from Unaltered Bacterial Cellulose: Application of scCO2 Drying for the Preparation of Shaped,Ultra‐Lightweight Cellulosic Aerogels

Bacterial cellulose produced by the gram‐negative bacterium Gluconacetobacter xylinum was found to be an excellent native starting material for preparing shaped ultra‐lightweight cellulose aerogels. The procedure comprises thorough washing and sterilization of the aquogel, quantitative solvent exchange and subsequent drying with supercritical carbon dioxide at 40 °C and 100 bar. The average density of the obtained dry cellulose aerogels is only about 8 mg · cm^?3 which is comparable to the most lightweight silica aerogels and distinctly lower than all values for cellulosic aerogels obtained from plant cellulose so far. SEM, ESEM and nitrogen adsorption experiments at 77 K reveal an open‐porous network structure that consists of a comparatively high percentage of large mesopores and smaller macropores.

     

Total Synthesis of the Antiviral Peptide Antibiotic Feglymycin

An adaptable approach : The first highly convergent stereoselective synthesis of feglymycin (see structure) and its enantiomer is based on the coupling of repeating peptide fragments. The use of weakly basic conditions throughout the synthesis suppressed the epimerization of sensitive aryl glycine units. Feglymycin has strong anti‐HIV activity as well as potent (previously identified as weak) antibacterial activity against Staphylococcus aureus.

     

The Striking Stabilization of Ni0(η6‐Arene) Complexes by an Ylide‐Like Silylene Ligand

The right mix does the trick : Elusive {Ni⁰(η⁶‐arene)} moieties can be dramatically stabilized by the N‐heterocyclic silylene ligand 1 , which has a zwitterionic mesomeric structure. The σ, π‐acid–base synergism between nickel and 1 explains the unexpectedly high stability of the new silylene complexes 2 , which enables arene exchange studies at a Ni⁰ center. Addition of B(C₆F₅)₃ to 2 affords the zwitterionic silylene complex 3 (see scheme, R=2,6‐iPr₂C₆H₃).

     

Age-related changes in within- and between-channel gap detection using sinusoidal stimuli

Pure tone gap stimuli with identical (within-channel) or dissimilar (between-channel) marker frequencies of 1 and 2 kHz were presented to young and old listeners in a two-interval forced choice gap detection task. To estimate the influence of extraneous duration cues on gap detection, thresholds in the between-channel conditions were obtained for two different sets of reference stimuli: reference stimuli that were matched to the overall duration of the gap stimulus, i.e., two markers plus the gap, and reference stimuli that were fixed at the combined duration of the two markers excluding the gap. Results from within-channel conditions were consistent with previous studies, i.e., there were small but highly reliable age differences, smaller gap thresholds at longer marker durations, and an interaction between the two variables. In between-channel conditions, however, age differences were not as clear cut. Rather, the effect of age varied as a function of duration cue and was more pronounced when stimuli were matched for overall duration than when the duration of the reference tone was fixed.     

Recirculating, passive micromixer with a novel sawtooth structure

A microfluidic device capable of recirculating nano to microlitre volumes in order to efficiently mix solutions is described. The device consists of molded polydimethyl siloxane (PDMS) channels with pressure inlet and outlet holes sealed by a glass lid. Recirculation is accomplished by a repeatedly reciprocated flow over an iterated sawtooth structure. The sawtooth structure serves to change the fluid velocity of individual streamlines differently depending on whether the fluid is flowing backwards or forward over the structure. Thus, individual streamlines can be accelerated or decelerated relative to the other streamlines to allow sections of the fluid to interact that would normally be linearly separated. Low Reynolds numbers imply that the process is reversible, neglecting diffusion. Computer simulations were carried out using FLUENT. Subsequently, fluorescent indicators were employed to experimentally verify these numerical simulations of the recirculation principal. Finally, mixing of a carboxyfluorescein labeled DMSO plug with an unlabeled DMSO plug across an immiscible hydrocarbon plug was investigated. At cycling rates of 1 Hz across five sawtooth units, the time was recorded to reach steady state in the channels, i.e. until both DMSO plugs had the same fluorescence intensity. In the case of the sawtooth structures, steady state was reached five times faster than in channels without sawtooth structures, which verified what would be expected based on numerical simulations. The microfluidic mixer is unique due to its versatility with respect to scaling, its potential to also mix solutions containing small particles such as beads and cells, and its ease of fabrication and use.     

Adjoint concepts for the optimal control of Burgers equation

Adjoint techniques are a common tool in the numerical treatment of optimal control problems. They are used for efficient evaluations of the gradient of the objective in gradient-based optimization algorithms. Different adjoint techniques for the optimal control of Burgers equation with Neumann boundary control are studied. The methods differ in the point in the numerical algorithm at which the adjoints are incorporated. Discretization methods for the continuous adjoint are discussed and compared with methods applying the application of the discrete adjoint. At the example of the implicit Euler method and the Crank Nicolson method it is shown that a discretization for the adjoint problem that is adjoint to the discretized optimal control problem avoids additional errors in gradient-based optimization algorithms. The approach of discrete adjoints coincides with that of automatic differentiation tools (AD) which provide exact gradient calculations on the discrete level.