Evaluation of protocols for reproducible electrospray in-source collisionally induced dissociation on various liquid chromatography/mass spectrometry instruments and the development of spectral libraries

Mass spectral libraries provide a tool for identifying unknown compounds using both molecular weight and fragmentation information. Mass spectrometers with electrospray ionisation (ESI) and atmospheric chemical ionisation (ApCI) sources have the capability to produce data of this type using in-source collisionally induced dissociation (CID), and in-source CID libraries can be created. Due to the variation in electrospray source design from different instrument manufacturers, the production of reproducible in-source CID spectra that can be used in libraries for all instrument types is not a trivial task. To date, the evaluation of the production of in-source CID libraries has tended to focus on similar instruments from one manufacturer. The studies have also tended to focus on specific compound classes, with a limited molecular weight range.This report describes the findings from the investigation of protocols for the creation of mass spectral libraries using ESI in-source CID on six instruments from four different manufacturers. The overall goal was to create a spectral library for the identification of unknowns. The library could then be applied across all manufacturers' electrospray instruments.Two different experimental protocols were attempted. The first used a tuning compound to establish standard ESI source conditions, with fixed fragmentation potentials. The second involved the attenuation of the [M + H](+) ion to a known degree. A diverse range of compounds (pharmaceutical, photographic, pesticides) was tested to establish the reproducibility of the spectra on the six instruments. Both protocols produced spectra on the various instruments that in many cases were very similar. In other examples, the spectra differed not only in their relative ion abundances, but also in terms of the spectral content. Important observations regarding the effect of ion source design are also reported.The degree of spectral reproducibility was calculated off-line by comparing the five most abundant ions (20% for each ion that matches) from each spectrum on each instrument. This approach was adopted, as we do not possess a software package that met our requirements for spectral comparison. Match factors (% fit) were calculated by comparing each spectrum against the spectra recorded for the same compound and then for all other compounds, on each instrument. The % fit values derived by the off-line approach gave a clear view of the spectral reproducibility from instrument to instrument and also discriminated the spectra of the various compounds from each other. The applicability of this approach was tested using a blind trial in which several compounds were presented as unknowns, their in-source CID spectra recorded and the five-ion approach used for identification.     

Voltammetric Reduction of alpha- and gamma-[S2W18O62]4- and alpha-, beta-, and gamma-[SiW12O40]4-: isomeric dependence of reversible potentials of polyoxometalate anions using data obtained by novel dissolution and conventional solution-phase processes

Comparative studies on the voltammetric reduction of the alpha and gamma isomers of Dawson [S(2)W(18)O(62)](4)(-) and alpha, beta, and gamma forms of Keggin [SiW(12)O(40)](4)(-) polyoxometalate anions have been undertaken. For the six reversible one-electron [S(2)W(18)O(62)](4)(-)(/5)(-)(/6)(-)(/7)(-)(/8)(-)(/9)(-)(/10)(-) processes in acetonitrile, reversible potentials (E(0)(')) were found to be independent of isomeric form within experimental error (+/-5 mV). However, because both the alpha and gamma* isomers of [Bu(4)N](4)[S(2)W(18)O(62)] are insoluble in water, solid-state voltammetric studies with microcrystals adhered to electrode surfaces in contact with aqueous Et(4)NCl and Bu(4)NCl electrolyte media were also possible. Although no isomeric distinction was again detected in the solid-state studies, it was found that reduction of adhered solid by four or more electron equivalents led to rapid dissolution. When Et(4)NCl was the electrolyte, this dissolution process coupled with potential cycling experiments enabled conventional solution-phase data to be obtained in water for the analogous six one-electron reduction steps previously detected in acetonitrile. A strong medium effect attributed to Lewis acidity effects was apparent upon comparison with E(0)(') data obtained in water and acetonitrile. In contrast, with the [SiW(12)O(40)](4)(-) system, E(0)(') values for the [SiW(12)O(40)](4)(-)(/5)(-)(/6)(-)(/7)(-) processes in acetonitrile exhibited a larger (about 70 mV) dependence on isomeric form, and the isomerization step, [gamma-SiW(12)O(40)](6)(-)--> [alpha-SiW(12)O(40)](6)(-), was detected on the voltammetric time scale. The influence of isomeric form on reversible potential data is considered in terms of structural and charge density differences exhibited in the [S(2)W(18)O(62)](4)(-) and [SiW(12)O(40)](4)(-) systems studied in this paper and published data available on the alpha, beta, gamma, and gamma isomers of [As(2)W(18)O(62)](6)(-) and [P(2)W(18)O(62)](6)(-) Dawson anions and Keggin systems.     

MP2 study of substituent effects of 2-substituted alkyl ethyl methylcarbamates in homogeneous, unimolecular gas phase elimination reaction

Møller-Plesset MP2/6-31G method was used to examine the gas-phase elimination of 2-substituted alkyl ethyl N,N-dimethylcarbamates. The results of these calculations support a concerted non-synchronous six-membered cyclic transition state mechanism for carbamates containing a C_β–H bond at the alkyl side of the ester. These substrates produce the N,N-dimethylcarbamic acid and the corresponding olefin. The unstable intermediate, N,N-dimethylcarbamic acid, rapidly decomposes through a four-membered cyclic transition state to dimethylamine and CO₂ gas. Correlation of the logarithm of theoretical rate coefficients against original Taft's σ* values gave an approximate straight line (ρ*=−1.39, r=0.9558 at 360 °C). In addition to this fact, when log k_rel is plotted against the theoretical log k_rel for 2-substituted ethyl N,N-dimethylcarbamates a reasonable straight line (r=0.9919 at 360 °C) is obtained, suggesting similar mechanism.     

Semiclassical variational study of size effects in neutral and charged jellium droplets

An analytic expression for the total energy of metallic clusters composed ofN identical atoms of valencev and with net chargeQ is obtained by means of a variational solution of the Thomas-Fermi-Weizsäcker energy density functional within the spherical jellium model. The minimum energy is given as an expansion in decreasing powers of the cluster radiusR=r _s Z ^1/3, withZ=vN andr _s the radius per electron of the bulk metal. The coefficients are obtained as functions ofr _s . Terms of volume (R ³), surface (R ²), curvature (R), constant (R ⁰), (1/R) and (1/R ²) are clearly separated in the formula, as well as the different contributions (kinetic, coulombic and exchange-correlation) to each of them. The asymptotic values (R→∞) for the work functions,W(r _s ), and surface energies σ(r _s ), are compared to analogous semiclassical and Kohn-Sham calculations of jellium-like surfaces and to the experimental values. The size dependent behaviour of chemical potentials, μ(R), electron affinities,AF(R), and ionization potentials,IP(R), are easily obtained for any kind of metallic clusters. In particular we discuss the Coulomb and quantum corrections to the coefficients β, δ in the asymptotic formulae:IP?W+β/R andAF?W+δ/R.     

Photochemical Rearrangement of a Steroidal α,β-Epoxylactone. Photochemical reactions,XI [1]

The UV. irradiation of 17β-acetoxy-4α, 5α-epoxy-2-oxaandrostan-3-one ( 7 ) yields 17β-acetoxy-2-oxa-10(5 → 4)abeo-4ζ (H)-androsta-3,5-dione ( 11 ). A non-photochemical synthesis of 11 , proceeding in lower yield, is also described.     

Mass spectra of some 2-methyl-3-(o- and p;-R-phenyl)-3,3a,4,5,6,7-hexahydro-2H-indazoles

The mass spectra of twelve 2-methyl-3-(o- and p-R-phenyl)-3,3a,4,5,6,7-hexahydro-2H-indazoles which have potentially useful pharmacological properties are presented.     

Synthesis and structure of neutral and cationic pentahaloarylpalladium(II) isonitrile complexes

Complexes of the types (a) trans- and cis-[Pd(C₆X₅)₂ (CNR)₂], (b) trans- [Pd(C₆X₅)Cl(CNR)₂] and (c) [Pd(C₆X₅)(CNR)₃]ClO₄ (X = F or Cl;R = Bu^t cyclohexyl or p-tolyl) have been made by replacement of the tetrahydrothiophen or Cl groups of appropriate precursors by isonitrile. Their structures have been assigned on the basis of their IR and ¹H NMR spectra.     

Global optimization of ionic Mg(n)F(2n) (n=1-30) clusters

The global optimization basin-hopping (BH) method has been used to locate the global minima (GM) of Mg(n)F(2n) (n=1-30) clusters using a Born-Mayer-type potential. Some of the GM were particularly difficult to find, requiring more than 1.5 x 10(4) BH steps. We have found that both the binding energy per MgF2 unit and the effective volume of the GM isomers increase almost linearly with n, and that cluster symmetry decreases with cluster size. The data derived from the BH runs reveal a growing density of local minima just above the GM as n increases. Despite this, the attraction basin around each GM is relatively large, since after all their atomic coordinates are randomly displaced by values as high as 2.0 bohrs, the perturbed structures, upon reoptimization, relax back to the GM in more than 50% of the cases (except for n=10 and 11). The relative stabilities derived from energy second differences suggest that n=8,10,13,15, and 20 are probably the magic numbers for these systems. Mass spectrum experiments would be very useful to clarify this issue.     

Differentiation among some isomeric di- and trifunctional aromatic amines by plasma desorption mass spectrometry

Isomeric di- and trifunctional aromatic amines are easily differentiated on the basis of their plasma desorption (PD) mass spectra. Six series of aromatic amines were studied in the positive-ion mode. In each series, the differences observed in the PD mass spectra allow each isomer to be characterized. In the formation of molecular ions, these differences proceed from the competition between electron impact ionization and protonation. Several chemoselective or regioselective reactions such as hydrogenation, hydration, dimerization and some fragmentations also allow isomeric aromatic amines to be differentiated.     

Application of Arene-Ruthenium Chemistry to a Formal Total Synthesis of OF 4949 III

A convergent formal total synthesis of OF 4949 III is described. Arene-ruthenium chemistry was used in the construction of the diaryl ether linkage in high yield, and cycloamidation under high dilution conditions (0.005 M) was achieved using DPPA as coupling reagent. SmI(2) was used to reductively remove the 2-iodoethyl ester protecting group in the presence of DMPU or HMPA.