A Correlative Analysis of Gold Nanoparticles Internalized by A549 Cells

Fluorescently labeled nanoparticles are widely used to investigate nanoparticle cell interactions by fluorescence microscopy. Owing to limited lateral and axial resolution, nanostructures (<100 nm) cannot be resolved by conventional light micro­scopy techniques. Especially after uptake into cells, a common fate of the fluorescence label and the particle core cannot be taken for granted. In this study, a correlative approach is presented to image fluorescently labeled gold nanoparticles inside whole cells by correlative light and electron microscopy (CLEM). This approach allows for detection of the fluorescently labeled particle shell as well as for the gold core in one sample. In this setup, A549 cells are exposed to 8 nm Atto 647N‐labeled gold nanoparticles (3.3 × 10⁹ particles mL^?1, 0.02 μg Au mL^?1) for 5 h and are subsequently imaged by confocal laser scanning microscopy (CLSM) and transmission electron microscopy (TEM). Eight fluorescence signals located at different intracellular positions are further analyzed by TEM. Five of the eight fluorescence spots are correlated with isolated or agglomerated gold nanoparticles. Three fluorescence signals could not be related to the presence of gold, indicating a loss of the particle shell.     

Pyridone dipeptide backbone scan to elucidate structural properties of a flexible peptide segment

Whereas the C-terminal fragment of neuropeptide Y (NPY) has been structurally well-defined both in solution and as membrane-bound, detailed structural information regarding the proline-rich N-terminus is still missing. The systematic variation of each position by a conformationally constrained pyridone dipeptide building block within the amino terminal segment of NPY leads to a systematic receptor subtype selectivity of the neuropeptide. Thereby, the systematic dipeptide scan proved superior to the traditional L-Ala scan because it showed how to modify the N-terminus in order to obtain increasingly more Y1 or Y5 receptor selective ligands. NMR and CD spectroscopic analyses were used to characterize the stepwise rigidification of the N-terminus of NPY when up to three dipeptide building blocks were incorporated by solid-phase peptide synthesis. The pyridone dipeptide increases the hydrophobicity of the amino terminus of NPY, and this allows the tuning of the membrane affinity of NPY. The amphiphilic C-terminal helix of 3-fold-substituted NPY thus becomes visible by selective line broadening in the (1)H NMR. Accordingly, we could structurally characterize protein segments that are too flexible for other methods.     

A molecular spectroscopic view of surface plasmon enhanced resonance Raman scattering

The enhancement of resonance Raman scattering by coupling to the plasmon resonance of a metal nanoparticle is developed by treating the molecule-metal interaction as transition dipole coupling between the molecular electronic transition and the much stronger optical transition of the nanoparticle. A density matrix treatment accounts for coupling of both transitions to the electromagnetic field, near-resonant energy transfer between the molecule-excited and nanoparticle-excited states, and dephasing processes. This fully quantum mechanical approach reproduces the interference effects observed in extinction spectra of J-aggregated dyes adsorbed to metal nanoparticles and makes testable predictions for surface-enhanced resonance Raman excitation profiles.     

Dodecyloxy‐substituted 2,4,6‐tris(styryl)pyridines

(E,E,E)‐2,4,6‐Tris(styryl)pyridines 2a‐c with 3, 6 or 9 dodecyloxy substituents were prepared by the highly stereoselective condensation reaction of collidine ( 8 ) and the corresponding phenyl‐(1‐phenyl‐methylidene)amines 7a‐c (Siegrist reaction). In contrast to the corresponding compounds with a benzene or a 1,3,5‐triazine core, 2a‐c do not show any hints for the formation of thermotropic liquid crystals. The major application of such star‐shaped systems is in the field of nonlinear optics.     

World First for Diamond in Synchrotron-Based IR Photothermal Nanospectroscopy

For the first time, infrared spectra on the sub-wavelength scale have been delivered by a synchrotron-radiation-induced thermal expansion technique [1 P.M. Donaldson, Optics Express 24(3), 1852–1864 (2016).[Crossref], [PubMed], [Web of Science ®] , [Google Scholar]]. The novel experimental result was achieved by coupling an atomic force microscope (AFM) to an infrared (IR) beamline at the UK's national synchrotron facility, Diamond Light Source. Via broadband synchrotron illumination and an AFM sub-micron tip, molecular IR spectra were obtained by detecting a resonance-enhanced (RE) photothermal signal with spatial resolution beyond the diffraction limit. Together with results on synchrotron IR nanoscopy in scattering mode from the IR beamline at the Advanced Light Source two years ago, the Diamond photothermal nanoprobe approach moves vibrational analysis beyond the diffraction limit and into nanoscale absorption spectroscopy.     

Fast energy transfer within a self-assembled cyclic porphyrin tetramer

The structure of a cyclic self-assembled tetramer of an asymmetric meso-ethynylpyridyl-functionalized Zn(II)-porphyrin was established by solution-phase X-ray scattering and diffraction; femtosecond transient absorption and anisotropy spectroscopies were used to (a) observe rapid energy transfer (3.8 ps(-1)) between porphyrin subunits and (b) establish that the transfer occurs between adjacent units.     

Post-SELEX chemical optimization of a trypanosome-specific RNA aptamer

African trypanosomes are the causative agent of sleeping sickness. The therapeutics used to control and treat the disease are very ineffective and thus, the development of improved drugs is urgently needed. Recently, new strategies for the design of novel trypanocidals have been put forward. Among them are techniques that rely on parasite-specific RNA aptamers. One approach involves the aptamer-directed transport of lytic compounds to the lysosome of the parasite. The aptamer has been termed 2-16 RNA and here we report the optimization of the RNA for its applications in vivo. To convert aptamer 2-16 into a serum-stable reagent 2'-deoxy-2'-F- and/or 2'-deoxy-2'-NH(2)-uridine- and cytidine-substituted RNAs were generated. While 2'-NH(2)-dC/dU-modified RNAs were RNase-resistant, they were functionally inactive. By contrast, 2'-F-dC/dU-substituted 2-16 RNA retained its ability to bind to live trypanosomes (K(d)=45 nM) and was routed to the lysosome identically to unmodified RNA. 2'-F-dC/dU-substituted 2-16 RNA is thermostable (T(m)=75 degrees C) and has a serum half-life of 3.4 days. Furthermore, aptamer 2-16 was site-specifically PEGylated to increase its serum retention time. Conjugation with PEG polymers < or = 10 kDa only marginally impacted the binding characteristics of the RNA, while the addition of higher molecular mass PEG molecules resulted in non-functional aptamers. Together, the data provide optimized conjugation chemistries for the large-scale production of substituted aptamer 2-16 preparations with improved in vivo functionality.