The effect of photomask resolution on separation efficiency on microfabricated devices

Separation quality on glass microfluidic devices fabricated from photomasks of different optical resolutions was compared by measuring the dispersion (apparent diffusion) coefficients of a set of standard compounds separated on these devices. Currently, the channel manifolds of most microfluidic devices are patterned using chrome photomasks. A much cheaper, more robust alternative to chrome photomasks are laser photoplotted masks. The primary disadvantage to using laser photoplots is that the optical resolution of these masks is not as high as that of chrome masks, and this feature increases the side-wall roughness of etched channel manifolds patterned using such masks. The increased wall roughness may affect the fluid flow within the channels and, therefore, the separation quality. To determine the effect of increased sidewall channel roughness, microchip channel manifolds were patterned in soda lime glass using a chrome photomask and laser photoplots printed at resolutions of 620, 1240, 3100 and 6200 dots per centimetre (dpc). Separations were performed on these devices using dilute solutions of fluorescently labeled amino acids. The peak variances of the amino acids were calculated at increasing distances down the separation channel and plotted as a function of migration time. From this plot, dispersion coefficients of the analytes were measured. This allowed for a reliable, relatively easy, direct separation analysis among microchips fabricated from the various photomasks. After multiple separations using microchips fabricated from each resolution mask, we found that the change in sidewall surface roughness did not significantly affect the dispersion coefficients measured, and thus the separation quality. The lower mask resolution limit, rather, was governed by the fidelity to which the mask could capture the original CAD design.     

Coordination ability of trans-cyclohexane-1,2-diamine-N,N,N',N'-tetrakis(methylenephosphonic acid) towards lanthanide(III) ions

The proton and metal complex equilibria of trans-cyclohexane-1,2-diamine-N,N,N',N'-tetrakis(methylenephosphonic acid) (CDTP) with lanthanide(iii) ions, where Ln(III) = La(III), Nd(III), Sm(III), Eu(III), Gd(III), Tb(III), Ho(III) and Lu(III) were studied. The stoichiometry, protonation and complex formation constants were determined by potentiometric titration at 25.0 degrees C and ionic strength of 0.1 mol dm(-3) (KCl). All metal ions form several species: [LnH4L]-, [LnH3L](2-), [LnH2L](3-), [LnHL](4-), [LnL](5-), [LnH(-1)L](6-) and [LnH(-2)L](7-) in the pH range between 2 and 11. The stability constants log beta(LnL) were found to be between 14.7 and 16.7. The studied complexes were also characterized by spectroscopic methods (31P NMR, UV-Vis absorption and emission spectroscopy). These studies allowed to reveal a distinct structural change of the Ln(III)-CDTP complex which occurs between protonated and hydroxy species in solutions at pH around 7.5. The major change is caused by the involvement of both nitrogen donors in the metal ion coordination occurring in ML species. The data obtained from UV-Vis spectroscopy allowed to draw conclusions about complex symmetry and to estimate a number of coordinated water molecules. The hydration number or more precisely the number of two OH oscillators was found to be approximately one in all species formed over the pH range between 5 and 10. The structure of the major hydroxy complex was supported by X-ray crystallographic data. The crystal structures of the Eu(III) and Tb(III) complexes clearly show that the CDTP ligand is coordinated to the Ln(III) ion by two nitrogen and four oxygen atoms in such a way that only one oxygen atom from each phosphonic group is placed in the lanthanide inner sphere. The monomeric complex anion is connected to a symmetry related ion through short hydrogen bonds formed by two hydroxy ions and one water molecule. In this way the two neighbouring anions form a quasi-dimer in which one of the Ln(III) ion is seven-coordinate (two N atoms, four O atoms and one hydroxy ion) and the other is eight-coordinate (two N atoms, four O atoms, one hydroxy ion and one water molecule).     

The malonyl transferase activity of type II polyketide synthase acyl carrier proteins

Acyl carrier proteins (ACPs) play a fundamental role in directing intermediates among the enzyme active sites of fatty acid and polyketide synthases (PKSs). In this paper, we demonstrate that the Streptomyces coelicolor (S. coelicolor) actinorhodin (act) PKS ACP can catalyze transfer of malonate to type II S. coelicolor fatty acid synthase (FAS) and other PKS ACPs in vitro. The reciprocal transfer from S. coelicolor FAS ACP to a PKS ACP was not observed. Several mutations in both act ACP and S. coelicolor FAS ACP could be classified by their participation in either donation or acceptance of this malonyl group. These mutations indicated that self-malonylation and malonyl transfer could be completely decoupled, implying that they were separate processes and that a FAS ACP could be converted from a non-malonyl-transferring protein to one with malonyl transferase activity.     

Estimates of the energy of intramolecular hydrogen bonds

A method for the estimation of the energy of intramolecular hydrogen bonds in conjugated systems existing in a variety of conformations is presented. The method is applied to determine the intramolecular hydrogen bond energy in 3-aminopropenal and 3-aminopropenthial. According to the proposed estimation scheme, the intramolecular H-bond energies are found to be of the order of 5-7 kcal/mol. These results are compared with those obtained by using other estimation schemes as well as with the recent results by other authors. Also, the H-bond energies in dimers and trimers of the two molecules are calculated and compared with the corresponding data for internally hydrogen-bonded monomers. This comparison shows that the bond equalization effect is primarily due to proton donor-proton acceptor proximity. In comparison with intermolecular hydrogen bonds, the rigidity of the chelate skeleton enhances this proximity effect. The same effect can be seen in systems with intermolecular hydrogen bonds, although its magnitude is diminished because of the absence of additional forces which pull the proton donor and proton acceptor groups toward each other. No specific resonance-assisted origin of the intramolecular hydrogen bond energy seems to be needed to elucidate the energetics of these bonds.     

Lipid diffusion in giant unilamellar vesicles is more than 2 times faster than in supported phospholipid bilayers under identical conditions

The lateral diffusion coefficients of a BODIPY tail-labeled lipid in two model systems, namely, free-standing giant unilamellar vesicles (GUVs) and supported phospholipid bilayers (SPBs), were determined by fluorescence correlation spectroscopy (FCS) using the Z-scan approach. For the first time, the performed measurements on 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) bilayers maintain exactly the same experimental conditions for both systems, which allows for a quantitative comparison of lipid diffusion in these two commonly used model membranes. The results obtained revealed that the lipid mobility in free-standing bilayers (D=7.8+/-0.8 microm2 s-1) is significantly higher than in the bilayer created on the solid support (mica) (D=3.1+/-0.3 microm2 s-1).     

Chiral seleno-amines from indium selenolates. A straightforward synthesis of selenocysteine derivatives

A simple and efficient procedure for the synthesis of chiral beta-seleno-amines derivatives from a one-pot indium(I) iodide-mediated aziridine ring opening with diorganoyl diselenides has been developed. As an application, the synthesis of selenocysteine and selenotreonine derivatives has been accomplished.     

1,3-Migration of a phenyl group in the conversion of (Me3Si)2(PhMe2Si)CSiMePhX into (Me3Si)2(Ph2MeSi)CSiMe2Y species

The finding that compounds of the type (Me₃Si)₂(PhMe₂Si)CSiMePhX react with electrophiles to give very predominantly rearranged products (Me₃Si)₂(Ph₂MeSi)CSiMe₂Y, which would be expected to be thermodynamically disfavoured, can be rationalized in terms of a mechanism in which the anchimerically-assisted departure of X⁻ gives the Ph-bridged cation [(Me₃Si)₂

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MePh]⁺ which is attacked by the nucleophile at the less hindered centre bearing two Me groups rather than that bearing one Me and one Ph group, with the outcome determined by kinetic rather than thermodynamic factors. Both (Me₃Si)₂(Ph₂MeSi)CSiMe₂Br and its isomer (Me₃Si)₂(PhMe₂Si)CSiMePhBr react with AgBF₄ in CH₂Cl₂ or Et₂O to give >95% of the fluoride (Me₃Si)₂(Ph₂MeSi)CSiMe₂F. Reaction of the bromide (Me₃Si)₂(PhMe₂Si)CSiMePhBr with AgO₂CCF₃ in Et₂O, and that of the hydride (Me₃Si)₂(PhMe₂Si)CSiMePhH with ICl in CCl₄, likewise give >95% of the rearranged (Me₃Si)₂(Ph₂MeSi)CSiMe₂O₂CCF₃ and (Me₃Si)₂(Ph₂MeSi)CSiMe₂Cl, respectively.     

Synthesis, characterization and electrochemical studies of the heterometallic diclusters [{Fe2(μ-CO)(CO)6(μ-PPh2)Au}2(diphosphine)] (diphosphine=dppm, dppip, dppe, dppp)

Treatment of [(ClAu)₂(diphosphine)] {diphosphine=bis(diphenylphosphino)methane (dppm), bis(diphenylphosphino)isopropane (dppip), 1,2-bis(diphenylphosphino)ethane (dppe), 1,3-bis(diphenylphosphino)propane (dppp)} with two equivalents of the anion [Fe₂(μ-CO)(CO)₆(μ-PPh₂)]⁻ in the presence of TlBF₄ gives the new heterometallic diclusters [{Fe₂(μ-CO)(CO)₆(μ-PPh₂)Au}₂(diphosphine)] that have been isolated and characterized. Their ³¹P-NMR spectra show different patterns as a function of the diphosphine ligand. The electrochemical behavior of these compounds has been investigated and compared with that of the mono- [Fe₂(μ-CO)(CO)₆(μ-PPh₂)(μ-AuPPh₃)] and tricluster [{Fe₂(μ-CO)(CO)₆(μ-PPh₂)Au}₃(triphos)] derivatives.     

The effect of meteorological parameters on radon concentration in borehole air and water

Seasonal and short term variations of ²²²Rn activity concentration in borehole air and water of the borehole drilled in cracked quartzite were studied and possible response on meteorological parameters was examined. Seasonal change of radon concentration in borehole air due to atmospheric temperature was confirmed. Short term variation of radon concentration in borehole air coincided with the atmospheric pressure changes. The strong impact of rainfall on radon concentration values was observed both in air and water environments. The decrease of radon content in borehole air and water followed radioactive decay law exclusively in spring and summer month. Contrary to borehole water, rainfall increased radon concentration in borehole air during spring and summer months only. In this paper the results from two and half years of investigation are presented.