Copper(II) mediated anion dependent formation of Schiff base complexes

A tetranuclear mixed ligand copper(II) complex of a pyrazole containing Schiff base and a hydroxyhexahydropyrimidylpyrazole and copper(II) and nickel(II) complexes of the Schiff base having N-donor atoms have been investigated. A 2 equiv amount of 5-methyl-3-formylpyrazole (MPA) and 2 equiv of 1,3-diamino-2-propanol (1,3-DAP) on reaction with 1 equiv of copper(II) nitrate produce an unusual tetranuclear mixed ligand complex [Cu4(L1)2(L2)2(NO3)2] (1), where H2L1 = 1,3-bis(5-methyl-3-formylpyrazolylmethinimino)propane-2-ol and HL2 = 5-methyl-3-(5-hydroxyhexahydro-2-pyrimidyl)pyrazole. In contrast, a similar reaction with nickel(II) nitrate leads to the formation of a hygroscopic intractable material. On the other hand, the reaction involving 2 equiv of MPA and 1 equiv each of 1,3-DAP and various copper(II) salts gives rise to two types of products, viz. [Cu(T3-porphyrinogen)(H2O)]X2 (X = ClO4, NO3, BF4 (2)) (T3-porphyrinogen = 1,6,11,16-tetraza-5,10,15,20-tetrahydroxy-2,7,12,17-tetramethylporphyrinogen) and [Cu(H2L1)X]X x H2O (X = Cl (3), Br (4)). The same reaction carried out with nickel(II) salts also produces two types of compounds [Ni(H2L1)(H2O)2]X2 [X = ClO4 (5), NO3 (6), BF4 (7)] and [Ni(H2L1)X2] x H2O [X = Cl (8), Br (9)]. Among the above species 1, 3, and 5 are crystallographically characterized. In 1, all four copper atoms are in distorted square pyramidal geometry with N4O chromophore around two terminal copper atoms and N5 chromophore around two inner copper atoms. In 3, the copper atom is also in distorted square pyramidal geometry with N4Cl chromophore. The nickel atom in 5 is in a distorted octahedral geometry with N4O2 chromophore, where the metal atom is slightly pulled toward one of the axial coordinated water molecules. Variable-temperature (300 to 2 K) magnetic susceptibility measurements have been carried out for complex 1. The separations between the metal centers, viz., Cu(1)...Cu(2), Cu(2)...Cu(2)A, and Cu(2)A...Cu(1)A are 3.858, 3.89, and 3.858 A, respectively. The overall magnetic behavior is consistent with strong antiferromagnetic interactions between the spin centers. The exchange coupling constants between Cu(1)...Cu(2) and Cu(2)...Cu(2A) centers have turned out to be -305.3 and -400.7 cm(-1), respectively, resulting in a S = 1/2 ground state. The complexes are further characterized by UV-vis, IR, electron paramagnetic resonance, and electrochemical studies.     

Reactions of Tris(diethylamino)phosphine with Some Quinones

Abstract

Tris(diethylamino)phosphine reacts with chloranil and 2,3-dichloro-4,5-dicyanoquinone to give products of addition to carbon with loss of chloride ion.     

Lipid Biomarkers of Lens Aging

Lipids are important structural components of cell membranes and have profound effect on membrane fluidity. Lipid profiling and lipidomics have captured increased attention due to the well-recognized roles of lipids in numerous human diseases. Investigating lipid profiles not only provides insights into the specific roles of lipid molecular species in health and diseases, but can also help in identifying potential preventive or therapeutic biomarkers. Cataract, the loss of transparency of eye lens, is a disease of protein aggregation. There are several factors contributing to the stability in protein conformation. Age-related changes in lipid composition could be a contributing factor for altered protein–lipid interaction leading to protein aggregation and cataract. Keeping this in view, in the present study, fatty acid profiling from different age groups of lenses was carried out, using a freshwater catfish as the model. Total lipids were extracted from lenses of three different age groups of fishes (young, adult, and aged) and fatty acid methyl esters (FAME) were prepared and FAME analysis was carried out using gas chromatography–mass spectrometry. The results showed that three fatty acids viz. heneicosylic acid (C21), docosahexaenoic acid (C22:6), nervonic acid (C24:1) which were not present in the adult lens, appeared in the aged lens. On the other hand, eicosenoic acid (C20:1) present in the adult lens was found to be absent in the aged lens. The appearance or disappearance of these fatty acids can possibly serve as biomarkers of aging lens which is the most vulnerable stage for cataract development.     

Characterization of Conducting Copolymer of Pyrrole via Pyrolysis Mass Spectrometry

In this work, structural and thermal characterization of BF₄ ^? doped copolymer of pyrrole (PPy) with 2‐methylbutyl‐2‐(3‐thienyl)acetate prepared by electrochemical polymerization were performed via a pyrolysis mass spectrometry technique. The pyrolysis mass spectrometry data of the copolymer PPy/PMBTA, and the homopolymers; polypyrrole, PPy, and poly(2‐methylbutyl‐2‐(3‐thienyl)acetate), PMBTA were analyzed and compared. It has been determined that when the electrochemical polymerization of pyrrole was achieved on a PMBTA coated anode through the thiophene moieties of PMBTA, thermal stability of PMBTA chains increased slightly and the decomposition of both units followed quite similar pathways indicating an increase in the thermal stability of PMBTA chains unlike what was observed for PTSA doped PPy/PMBTA copolymer.     

Probiotic Bile Salt Hydrolase: Current Developments and Perspectives

Probiotic has modernized the current dietetic sense with novel therapeutic and nutritional benefits to the consumers. The presence of bile salt hydrolase (BSH) in probiotics renders them more tolerant to bile salts, which also helps to reduce the blood cholesterol level of the host. This review focuses on the occurrence of bile salt hydrolase among probiotics and its characterization, importance, applications, and genetics involved with recent updates. Research on bile salt hydrolase is still in its infancy. The current perspective reveals a huge market potential of probiotics with bile salt hydrolase. Intensive research in this field is desired to resolve some of the lacunae.     

Exploiting the right side of the Ramachandran plot: substitution of glycines by D-alanine can significantly increase protein stability

A major goal of protein engineering is the enhancement of protein stability. Here we demonstrate a rational method for enhancing the stability of globular proteins by targeting glycine residues which adopt conformations with Phi > 0. Replacement of such a glycine by d-alanine can lead to a significant increase in stability. The approach is tested at three sites in two model proteins. NMR and CD indicated that the substitutions do not alter the structure. Replacement of glycine-24 of the N-terminal domain of L9 (NTL9) with d-Ala results in an increase in stability of 1.3 kcal mol-1, while replacement of glycine-34 of NTL9 leads to an increase of 1.9 kcal mol-1. Replacement of glycine-331 of the UBA domain with d-Ala leads to an increase in stability of 0.6 kcal mol-1.     

3D QSAR studies on protein tyrosine phosphatase 1B inhibitors: comparison of the quality and predictivity among 3D QSAR models obtained from different conformer-based alignments

A set of 65 flexible peptidomimetic competitive inhibitors (52 in the training set and 13 in the test set) of protein tyrosine phosphatase 1B (PTP1B) has been used to compare the quality and predictive power of 3D quantitative structure-activity relationship (QSAR) comparative molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA) models for the three most commonly used conformer-based alignments, namely, cocrystallized conformer-based alignment (CCBA), docked conformer-based alignment (DCBA), and global minima energy conformer-based alignment (GMCBA). These three conformers of 5-[(2S)-2-({(2S)-2-[(tert-butoxycarbonyl)amino]-3-phenylpropanoyl}amino)3-oxo-3-pentylamino)propyl]-2-(carboxymethoxy)benzoic acid (compound number 66) were obtained from the X-ray structure of its cocrystallized complex with PTP1B (PDB ID: 1JF7), its docking studies, and its global minima by simulated annealing. Among the 3D QSAR models developed using the above three alignments, the CCBA provided the optimal predictive CoMFA model for the training set with cross-validated r2 (q2)=0.708, non-cross-validated r2=0.902, standard error of estimate (s)=0.165, and F=202.553 and the optimal CoMSIA model with q2=0.440, r2=0.799, s=0.192, and F=117.782. These models also showed the best test set prediction for the 13 compounds with predictive r2 values of 0.706 and 0.683, respectively. Though the QSAR models derived using the other two alignments also produced statistically acceptable models in the order DCBA>GMCBA in terms of the values of q2, r2, and predictive r2, they were inferior to the corresponding models derived using CCBA. Thus, the order of preference for the alignment selection for 3D QSAR model development may be CCBA>DCBA>GMCBA, and the information obtained from the CoMFA and CoMSIA contour maps may be useful in designing specific PTP1B inhibitors.     

Viscosities and Refractive Indices of Binary Mixtures of Dimethylsulphoxide with Some Aromatic Hydrocarbons at Different Temperatures: An Experimental and Theoretical Study

The viscosities, η, and refractive indices, n, of pure dimethylsulphoxide (DMSO), benzene, toluene, o‐xylene, m‐xylene, p‐xylene and mesitylene, and those of their 54 binary mixtures, with DMSO as common component, covering the whole composition range have been measured at 298.15, 303.15, 308.15, 313.15, and 318.15 K. From the experimental data, the deviations in viscosity, Δη and deviations in molar refraction, ΔR_m have been calculated. The variation of these parameters with composition and temperature of the mixtures have been discussed in terms of molecular interaction in these mixtures. The effect of the number and position of the methyl groups in these aromatic hydrocarbons on molecular interactions in these mixtures has also been discussed. The free energies, ΔG^*, enthalpies, ΔH^* and entropies, ΔS^* of activation of viscous flow have also been obtained by using Eyring viscosity equation. The ΔH^* values were found independent of temperature. The dependence of these thermodynamic parameters on composition of the mixtures has been discussed. Further, the viscosities and refractive indices of these binary mixtures were calculated theoretically from pure component data by using various empirical and semi‐empirical relations and the results were compared with the experimental findings.     

Microwave-assisted synthesis and biological evaluation of pyrazole-4-carbonitriles as antimicrobial agents

An efficient microwave-assisted method of synthesis of pyrazole-4-carbonitriles has been developed. Condensation of pyrazole-4-carbaldehydes with hydroxylamine hydrochloride followed by reaction of the resulting oximes with the Vilsmeier-Haack reagent pre-formed from phthaloyl dichloride and dimethylformamide under microwave irradiation afforded the corresponding pyrazole-4-carbonitriles in 73% to 91% yield. The operational simplicity, avoidance of toxic reagents such as POCl₃, shorter reaction time, higher yield compared to the classical version, easy work up, and the use of the by-product in the regeneration of phthaloyl dichloride are the advantages of this methodology. All the target compounds were tested for antimicrobial activity against Gram-positive bacteria Bacillus cereus and Staphylococcus aureus; Gram-negative bacteria Escherichia coli and Yersinia enterocolitica, and the fungal species Candida albicans.