Microwave study of the soft ferroelectric mode in Sn2P2S6 crystals

This paper presents the results of the investigation of dielectric dispersion in semiconductive ferroelectric Sn₂P₂S₆ crystals over the frequency range 1 kHz to 78.5 GHz. The main dielectric dispersion in Sn₂P₂S₆ is caused by the soft ferroelectric B_u mode and in the vicinity of the Curie point it occurs in the millimeter region. The frequency of the soft mode in the paraelectric phase varies according to v_s = 35 (T-T_c )^½ GHz on approaching the Curie point. The soft mode is strongly overdamped. Close to T_c the relative damping is y/v_s = 14. The dielectric contribution of the soft mode is equal to the static dielectric permittivity and it explains its whole temperature-dependence.     

X-ray Photoelectron Spectroscopy of Sb2S3 Crystals

The paper presents the X-ray photoelectron spectra (XPS) of the valence band and core levels of semiconductor ferroelectric Sb₂S₃ single crystals, which show weak phase transitions and anomalies of various physical properties. The XPS were measured with monochromatized Al K _α radiation in the energy range 0-1450 eV and the temperature range 160-450 K. The valence band is located 0.8-7.5 eV below the Fermi level. Experimental results of the valence band and core levels are compared with the results of theoretical ab initio calculations of the molecular model of Sb₂S₃ crystal. The chemical shifts in Sb₂S₃ crystal for the Sb and S states are obtained. Results revealed that the small structural rearrangements at the phase transition T _c1 = 300 K shift the Fermi level and all electronic spectrum. Also, temperature dependence of a spontaneous polarisation shifts the electronic spectra of the valence band and core levels. Specific temperature-dependent excitations in Sb 3d core levels are also revealed.     

Synthesis and Evaluation of Non-Hydrolyzable Phospho-Lysine Peptide Mimics

The intrinsic lability of the phosphoramidate P−N bond in phosphorylated histidine (pHis), arginine (pHis) and lysine (pLys) residues is a significant challenge for the investigation of these post-translational modifications (PTMs), which gained attention rather recently. While stable mimics of pHis and pArg have contributed to study protein substrate interactions or to generate antibodies for enrichment as well as detection, no such analogue has been reported yet for pLys. This work reports the synthesis and evaluation of two pLys mimics, a phosphonate and a phosphate derivative, which can easily be incorporated into peptides using standard fluorenyl-methyloxycarbonyl- (Fmoc-)based solid-phase peptide synthesis (SPPS). In order to compare the biophysical properties of natural pLys with our synthetic mimics, the pK_a values of pLys and analogues were determined in titration experiments applying nuclear magnetic resonance (NMR) spectroscopy in small model peptides. These results were used to compute electrostatic potential (ESP) surfaces obtained after molecular geometry optimization. These findings indicate the potential of the designed non-hydrolyzable, phosphonate-based mimic for pLys in various proteomic approaches.     

Combining free energy calculations with tailored enzyme activity assays to elucidate substrate binding of a phospho-lysine phosphatase

Studying enzymes that are involved in the regulation of dynamic post-translational modifications (PTMs) is of key importance in proteomics research. Such investigations can be particularly challenging when the modification itself is intrinsically labile. In this article, we elucidate the enzymatic activity of Phospholysine Phosphohistidine Inorganic Pyrophosphate Phosphatase (LHPP) towards different O- and N-phosphorylated peptides by a combined experimental and computational approach. LHPP has been previously described to hydrolyze the phosphoramidate bonds in different small molecule substrates, including phosphorylated lysine (pLys). Taking the instability of the phosphoramidate bond into account, we conducted a carefully adjusted enzymatic assay with various pLys pentapeptides to confirm enzymatic phosphatase activity with LHPP. Molecular docking was employed to explore possible binding poses of the substrates in complex with the enzyme. Molecular dynamics based free energy calculations, which are unique in their accuracy and solid theoretical basis, were further applied to predict relative binding affinity of different substrates. Comparison of simulations with experiments clearly suggested a distinct binding motif of pLys peptides as well as a very narrow promiscuity of LHPP. We believe this integrated approach can be widely adopted to study the structure and interaction of poorly characterized enzyme–substrate complexes, in particular with synthetically challenging or labile substrates.

Combining phosphatase activity assays with molecular docking and free energy calculations reveals low promiscuity and substrate binding of intrinsically labile phospho-lysine peptides to the enzyme LHPP.     

Binding capacity of molecularly imprinted polymers and their nonimprinted analogs

Molecularly imprinted polymers bind their target compounds at binding sites. The binding sites are typically based on some type of functional group, such as carboxyl group. The total amount of such functional groups and their distribution into available and unavailable groups is not well known. The total binding capacity is usually indirectly determined from adsorption isotherms, which are measured much below the theoretical binding capacity. This work shows that in a variety of differently prepared, methacrylic acid based molecularly imprinted and nonimprinted polymers, all carboxylic groups used for the polymer synthesis are retained in the polymer, 80–90% of them can be accessed by strong bases and essentially the same amount can be used for adsorption of weak bases. This high level of adsorption can only be achieved, however, if the adsorbed weak base is strong enough, if the polymer is sufficiently elastic and if the solvent does not compete too strongly for the binding sites. These results may explain why the maximum binding capacities obtained from isotherm measurements are usually not equal to the total amount of available binding sites. This study confirms the usefulness of nonimprinted polymers at high loadings.     

Determination of empirical polarity parameters of the cellulose solvent N,N-dimethylacetamide/LiCl by means of the solvatochromic technique

Empirical solvatochromic polarity parameters (α-, β-, and $ \pi ^* $, AN and DN, as well as E_T(30)-values) for cellulose, N,N-dimethylacetamide (DMA)/LiCl and cellulose dissolved in DMA/LiCl are presented. The following solvent polarity indicators were applied: 2,6-diphenyl-4-(2,4,6-triphenyl-1- pyridinio)-1-phenolate ( 1 ), bis(4-N,N-dimethylamino)-benzophenone (MK, 2 ), iron(II)-di-cyano-bis(1,10)-phenanthroline, Fe(phen)₂(CN)₂, ( 3 ), and copper(II)-N,N,N′,N′-tetramethyl-ethylendiamine-acetylacetonate tetraphenylborate/chloride/bromide (Cu(tmen)(acac)⁺ X⁻ ( 4 )). The solvatochromic shifts (ν_max) of the indicators 1 , 2 , 3 , and 4 adsorbed to cellulose or dissolved in DMA/LiCl reflect the corresponding properties of the surrounding, the dipolarity/polarizability ($ \pi ^* $), the hydrogen bond donating ability or Lewis acidity (α), and the hydrogen bond accepting ability or Lewis basicity (β), respectively. Any indicator employed is well characterized (r > 0.97) by a linear solvation energy relationship (LSER) taking the Kamlet and Taft parameter into account: ν_max(indicator) = ν_max,0 + s$ \pi ^* $ + aα + bβ. Cellulose, DMA/LiCl, and the cellulose/DMA/LiCl solution approach a similar polarity with an E_T(30) parameter about 52 to 53 kcal mol⁻¹. The hypothetical interaction strength parameter (acid-base interactions, dipolar–dipolar interactions) between cellulose and DMA/LiCl are calculated by means of the individual Kamlet–Taft parameters α, β, and $ \pi ^* $ of cellulose and DMA/LiCl via a multiparameter equation. The specific chloride/cellulose interaction plays a dominant role in the cellulose solvent DMA/LiCl. Comparison of the polarity parameters of DMA/LiCl with the polarity parameters of other mixtures—such as N,N-dimethyl- formamide/LiCl, DMA/NaCl, or DMA/LiBr—are presented as well. © 1998 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 36: 1945–1955, 1998     

Die Phasenübergänge und die Störstellenphotoleitung von Sb2S3

The influence of the Sb₂S₃ single crystals growing conditions on the mikrowave dielectric permittivity and the photoconductivity has been investigated. An improper photoconductivity arises on the ferroelectric plane (001) in the crystals with a high dielectric permittivity.     

Microwave dielectric dispersion in ferroelectric telluric acid ammonium phosphate

The paper presents the results of the investigation of dielectric dispersion in monoclinic telluric acid ammonium phosphate crystal over the frequency range 1 MHz to 77 GHz. It is shown that ferroelectric dispersion of the Debye type along the direction perpendicular to the plane (101) occurs in the frequency range 10⁸ to 10¹¹ Hz and is caused by a single relaxational soft mode. The relaxational soft mode is caused by the flipping motion of protons between two potential minima in a hydrogen bond. The frequency of the flipping proton mode in the paraelectric phase varies according to v_s = 0.94 (T – T_o ) GHz and decreases to 1.75 GHz at T_c = 317.3 K. The relaxational mode gives the main contribution to the high static dielectric permittivity of this crystal which fits the Curie-Weiss law. The results confirm the order-disorder nature of a proper ferroelectric phase transition of second order.