Fragmentation behavior of Amadori‐peptides obtained by non‐enzymatic glycosylation of lysine residues with ADP‐ribose in tandem mass spectrometry

Mono‐ and poly‐adenosine diphosphate (ADP)‐ribosylation are common post‐translational modifications incorporated by sequence‐specific enzymes at, predominantly, arginine, asparagine, glutamic acid or aspartic acid residues, whereas non‐enzymatic ADP‐ribosylation (glycation) modifies lysine and cysteine residues. These glycated proteins and peptides (Amadori‐compounds) are commonly found in organisms, but have so far not been investigated to any great degree. In this study, we have analyzed their fragmentation characteristics using different mass spectrometry (MS) techniques. In matrix‐assisted laser desorption/ionization (MALDI)‐MS, the ADP‐ribosyl group was cleaved, almost completely, at the pyrophosphate bond by in‐source decay. In contrast, this cleavage was very weak in electrospray ionization (ESI)‐MS. The same fragmentation site also dominated the MALDI‐PSD (post‐source decay) and ESI‐CID (collision‐induced dissociation) mass spectra. The remaining phospho‐ribosyl group (formed by the loss of adenosine monophosphate) was stable, providing a direct and reliable identification of the modification site via the b‐ and y‐ion series. Cleavage of the ADP‐ribose pyrophosphate bond under CID conditions gives access to both neutral loss (347.10 u) and precursor‐ion scans (m/z 348.08), and thereby permits the identification of ADP‐ribosylated peptides in complex mixtures with high sensitivity and specificity. With electron transfer dissociation (ETD), the ADP‐ribosyl group was stable, providing ADP‐ribosylated c‐ and z‐ions, and thus allowing reliable sequence analyses. Copyright © 2010 John Wiley & Sons, Ltd.     

Profiling of hydroxycinnamic acid amides in Arabidopsis thaliana pollen by tandem mass spectrometry

Phenylpropanoid polyamine conjugates are widespread in plant species. Their presence has been established in seeds, flower buds, and pollen grains. A biosynthetic pathway proposed for hydroxycinnamoyl spermidine conjugates has been suggested for the model plant Arabidopsis thaliana with a central acyl transfer reaction performed by a BAHD-like hydroxycinnamoyl transferase. A detailed liquid chromatography (LC)–electrospray ionization–mass spectrometry- and tandem-mass-spectrometry (MS/MS)-based survey of wild-type and spermidine hydroxycinnamoyl transferase (SHT) mutants identified more than 30 different bis- and tris-substituted spermidine conjugates, five of which were glycosylated, in the methanol-soluble fraction of the pollen exine. On the basis of characterized fragmentation patterns, a high-throughput LC–MS/MS method for highly sensitive HCAA relative quantification (targeted profiling) was developed. Only minor qualitative and quantitative differences in the pattern of bis-acyl spermidine conjugates in the SHT mutant compared to wild-type plants provide strong evidence for the presence of multiple BAHD-like acyl transferases and suggest a much more complex array of enzymatic steps in the biosynthesis of these conjugates than previously anticipated.     

Electrochemical study of self-assembled monolayer adsorption

The electrochemical behaviour of self-assembled monolayer (SAM) of aliphatic hexadecanethiol was studied by cyclic voltammetry (CV), elimination voltammetry with linear scan (EVLS) and crystal quartz microbalance (QCM). SAMs were electrochemically created on gold-coated QCM crystal through the sulphur in 1-hexadecanethiol molecule head group. The effect of thiol concentration and potential scan rate on the SAM formation was studied. Formation of SAM was confirmed by CV and QCM. EVLS results revealed the kinetically controlled process followed with electrode reaction in adsorbed state characteristic for SAM formation at lower concentration. The electrode reaction of a totally adsorbed electroactive species was indicated by means of a peak-counter peak signal at higher thiol concentration.     

Diastereoselective Double C−H Functionalization of Chiral Ferrocenes with Heteroaromatics

Diastereoselective double C−H heteroarylation of chiral ferrocenes provides valuable compounds with multiple functionalities using mild reaction conditions and simple reagents. Pd-Complexes with chiral mono-protected amino acids afforded corresponding heteroarylated ferrocenyl amines in good yields and high diastereomeric purities. In this way, a variety of indole, thiophene, pyrrole, or furan substituents were introduced to the ferrocene moiety. Furthermore, a range of relevant functional groups, for example ketone, ester, chloro, nitro, or silyl, are tolerated by this method. An alternative combination of amino acid and ferrocenyl amine configurations was leveraged to provide the complementary diastereomeric products. The products of C−H heteroarylation can be transformed into corresponding phosphines. Absolute configurations of CH-activation products were confirmed by the combination of X-ray crystallographic analysis and CD spectroscopy. ¹⁹F NMR kinetic study and DFT calculations provided insights into the reaction mechanism and reasons governing stereoinduction.     

Technical and radiological characterisation of fly ash and bottom ash from thermal power plant

Journal of Radioanalytical and Nuclear Chemistry - Huge quantities of fly ash and bottom ash are generated from thermal power plants and it presents great concern for country, mainly due...     

Material symmetries versus wavefront symmetries

We show that, in general, wavefronts are more symmetric thanthe medium in which they propagate. This means that we cannotdetermine the symmetries of the medium based solely on the symmetriesof the wavefronts. However, we show that we can determine thesymmetries of the medium from the symmetries of wavefronts andpolarizations together.     

Further test of third order + second-order perturbation DFT approach: hard core repulsive Yukawa fluid subjected to diverse external fields

Grand canonical Monte Carlo simulation is used to investigate density profiles of hard-core repulsive Yukawa (HCRY) model fluid under the influence of various external fields and radial distribution function (RDF) of the bulk HCRY system. The aim of these extensive simulations is to provide exact data for purely repulsive interaction potential against which the validity of a third order + second-order perturbation DFT approach can be tested. It is found that a semiempirical parametrized bridge function due to Malijevsky and Labik performs very well for the RDF of the bulk HCRY fluid. Incorporation of a bulk second-order direct correlation function (DCF) of the HCRY fluid based on the Malijevsky-Labik bridge function into the third order + second-order perturbation DFT approach yields the resulting theoretical predictions for the density profiles of inhomogeneous HCRY fluid that are in a very good agreement with the simulation data, an exception being somewhat larger deviations appearing for the structure of the fluid around the center of a hard spherical cavity. Both theory and simulation predict layering transition and gas-liquid coexistence phenomena occurring with the HCRY model fluid under confined conditions. For the case of an inverse sixth-power repulsive potential under the influence of a flat stationary wall defined by an inverse twelfth-power repulsive potential, the present third order + second-order perturbation DFT approach is found to be superior to several existing weighted density approximations (WDA) and partitioned WDA.     

Communication: crystallite nucleation in supercooled glycerol near the glass transition

Heterogeneity and solid-like structures found near the glass transition provide a key to a better understanding of supercooled liquids and of the glass transition. However, the formation of solid-like structures and its effect on spatial heterogeneity in supercooled liquids is neither well documented nor well understood. In this work, we reveal the crystalline nature of the solid-like structures in supercooled glycerol by means of neutron scattering. The results indicate that inhomogeneous nucleation happens at temperatures near T(g). Nevertheless, the thermal history of the sample is essential for crystallization. This implies such structures in supercooled liquids strongly depend on thermal history. Our work suggests that different thermal histories may lead to different structures and therefore to different length and time scales of heterogeneity near the glass transition.     

On the motion of charged particles in an alternating nonuniform electric field

The equations of motion for a charged particle in an electric field featuring a stationary and an oscillating component are considered for the case where the force of friction is linear in the particle velocity. The averaging of these equations over the period of field oscillations is legitimate under some specific conditions. The most general expression for an additional stationary force acting on the particle under these conditions is derived, and the limiting values of this force are found. Applications of the results obtained in the present study are considered. Such applications include the use of pulsed currents in the electrochemical dimensional treatment of materials.