Genes encoding enzymes responsible for biosynthesis of L-lyxose and attachment of eurekanate during avilamycin biosynthesis

The oligosaccharide antibiotic avilamycin A is composed of a polyketide-derived dichloroisoeverninic acid moiety attached to a heptasaccharide chain consisting of six hexoses and one unusual pentose moiety. We describe the generation of mutant strains of the avilamycin producer defective in different sugar biosynthetic genes. Inactivation of two genes (aviD and aviE2) resulted in the breakdown of the avilamycin biosynthesis. In contrast, avilamycin production was not influenced in an aviP mutant. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue. Finally, AviE2 was expressed in Escherichia coli and the gene product was characterized biochemically. AviE2 was shown to convert UDP-D-glucuronic acid to UDP-D-xylose, indicating that the pentose residue of avilamycin A is derived from D-glucose and not from D-ribose. Here we report a UDP-D-glucuronic acid decarboxylase in actinomycetes.     

Determination of alachlor and two metabolites in groundwater using solid phase and a new micro-liquid-liquid extraction method

Two different extraction procedures to determine alachlor (2-chloro-2,6-diethyl-N-methoxymethyl-acetanilide) and its metabolites 2,6-diethylaniline (DEA) and 2-chloro-2,6-diethylacetanilide (CDEA) at very low concentration levels in groundwater are compared. Both methods were performed during a field leaching study and laboratory soil column experiments. Solid phase extraction (SPE) is characterized by the enrichment of 11 water samples at 1 g RP-C18 material, while micro liquid/liquid extraction (MLLE) means that 400 ml water samples saturated with sodium chloride were extracted once with 500 l of toluene. Both methods differ in their concentration factors, i.e. 5000 for SPE and 800 for MLLE. The determination limits for alachlor determined as the lowest spiked concentration analyzed are 10 ng/l with SPE and 25 ng/l with MLLE. Even though the determination limits of the two methods are similar, the volatile metabolite 2,6-diethylaniline was not sufficiently recovered by SPE. Furthermore, SPE is more expensive and time consuming than MLLE. The latter is simple in use, rapidly performed and needs no evaporation step and clean-up before GC analysis. This is of special advantage for the analysis of 2,6-diethylaniline. The determination limits of the metabolites CDEA and DEA analyzed by MLLE are 25 ng/l. The extracts from both methods were directly analyzed by gas chromatography using electron capture and nitrogen-phosphorus detection.     

Cycloarsanes (AsCF3)n (n = 4, 5) – Precursors for the Highly Reactive Diarsene F3CAs=AsCF3

Tetrakis(trifluoromethyl) cyclotetraarsane (F₃CAs)₄ ( 2 ) was used to repeat the UV initiated [4+2]‐cycloaddition reaction of the diarsene F₃CAs=AsCF₃ ( 1 ) with cyclohexa‐1,3‐diene (CHD) and to isolate single crystals of the cycloadduct 4 for a X‐ray diffraction analysis. 4 crystallizes in the space group and contains the diarsene group in its E‐configuration. 2 was also applied for [2+2]‐cycloaddition reactions of 1 with tBuC≡P and MeC≡CNⁱPr₂, but in contrast to positive results with (F₃CP)₄ the products were too labile for isolation. However, 2 was successfully used at room temperature as precursor for coordinating 1 as π‐donor ligand to the Pd(PPh₃)₂ complex fragment yielding η²‐bis(trifluoromethyl)diarsene‐bis(triphenylphosphane)‐palladium(0) 5 , which was characterized by X‐ray diffraction of single crystals and by spectroscopic investigations (NMR, IR, MS). Attempts to prove the existence of the diarsene 1 , generated by different methods, by spectroscopic studies very probably failed due to its extreme reactivity, not allowing the necessary concentrations for detection. Quantum chemical calculations of the stability of 1 with respect to dimerization, the stability of the [2+2]‐cycloadduct with 1‐di(isopropyl)aminopropyne and the energy difference between 4 and the 2,3‐dimethyl‐1,3‐butadiene cycloadduct of 1 were performed to understand the considerable differences between 1 and the related diphosphene F₃CP=PCF₃.     

T(h)-symmetrical hexakisadducts of C(60) with a densely packed pi-donor shell can act as energy- or electron-transducing systems

For the first time several T(h)-symmetrical hexakisadducts of C(60) bearing up to six electro- and photoactive o-phenylene diamine or 9,10-dialkoxyanthracene moieties were synthesized and subjected to photoinduced electron/energy-transfer studies. Both donors form a densely packed pi-donor shell surrounding the fullerene core. In these novel core-shell ensembles (7 and 19), either an efficient energy transfer from the dialkoxyanthracene periphery, or an electron transfer from the o-phenylene diamine periphery transduces the flow of excited-state energy or electrons, respectively, to the fullerene moiety, which resides in the central core. Due to the relatively high reduction potential of the fullerene core, which is anodically shifted by approximately equal to 0.7 V, compared with that of pristine C(60), the outcome of these intramolecular reactions depends mainly on the donor ability of the peripheral system. Interestingly, the charge-separated state in the o-phenylene diamine heptad (7; tau=2380 ns in benzonitrile) is stabilized by a factor of 20 relative to the corresponding o-phenylene diamine dyad (6; tau=120 ns in benzonitrile), an effect that points unequivocally to the optimized storage of charges in this highly functionalized fullerene ensemble.     

Preparation of macrocyclic 15N-labelled oligoaminodeoxysaccharides as probes for RNA-binding

Two macrocyclic aminoglycosides were prepared from a 1,4-butanediol linked 2-deoxy-L-rhamnal which was O-allylated at the 4- and 4'-positions via the precursor allyl 3,4-di-O-acetyl-2,6-dideoxy-alpha-L-arabino-hexoside employing olefin metathesis and ring closing metathesis in a sequential manner. The macrocycles were 15N-labelled at all four amino groups in order to study interactions with regulatory RNA structures in solution by NMR spectroscopy. A key step for the introduction of the 15N-label was a reductive amination step using commercially available 15NH4OAc. The reductive amination proceeds with excellent stereocontrol. As a by-product the unusual acyclic amino nitrile was isolated which originated from intramolecular imine formation followed by cyanide addition to the intermediate C=N double bond.     

Measuring intracellular calcium fluxes in high throughput mode

The measurement of intracellular calcium fluxes in real time is widely applied within the pharmaceutical industry to measure the activation of G-protein coupled receptors (GPCRhyp;s), either for pharmacological characterisation or to screen for new surrogate ligands. Initially restricted to G(q) coupled GPCRs, the introduction of promiscuous and chimeric G-proteins has further widened the application of these assays. The development of new calcium sensitive dyes and assays has provided sensitive, homogeneous assays which can be readily applied to high throughput screening (HTS). In this paper we describe the full automation of this assay type using a fluorometric imaging plate reader (FLIPR ) integrated into a Beckman/Sagian system to establish a simple robotic system that is well suited for the current medium throughput screening in this area of lead discovery. Using a recently completed HTS we discuss important determinants for FLIPR based screening, highlight some limitations of the current approach, and look at the requirements for future automated systems capable of keeping up with expanding compound files.     

Shortcut method for evaluation and design of a hybrid process for enantioseparations

Hybrid processes for enantioseparations have a considerable potential for reducing investment and operational costs. An example is the combination of simulated moving bed (SMB) chromatography and selective crystallisation. However, the design of integrated processes is a difficult task. A shortcut method is presented that can serve as a tool for design and estimation of the potential of such processes. The approach requires only limited experimental data and thus allows for systematic parameter studies. The method is based on the determination of the purity-performance characteristic of the SMB process and rigorous application of mass balances. The use of relative mass fluxes allows derivation of simple algebraic expressions for essential process parameters. The significant potential of combining SMB and crystallisation is demonstrated for the example of the separation of mandelic acid enantiomers.     

A new concept for isotope ratio monitoring liquid chromatography/mass spectrometry

A new interface for the on-line coupling of a liquid chromatograph to a stable isotope ratio mass spectrometer has been developed and tested. The interface is usable for (13)C/(12)C determination of organic compounds, allowing measurement of small changes in (13)C abundance in individual analyte species. All of the carbon in each analyte is quantitatively converted into CO(2) while the analyte is still dissolved in the aqueous liquid phase. This is accomplished by an oxidizing agent such as ammonium peroxodisulfate. The CO(2) is separated from the liquid phase and transferred to the mass spectrometer. It is shown that the whole integrated process does not introduce isotope fractionation. The measured carbon isotope ratios are accurate and reproducible. The sensitivity of the complete system allows isotope ratio determination down to 400 ng of compound on-column. By-passing the high-performance liquid chromatography (HPLC) separation allows bulk isotopic analysis with substantially lower sample amounts than those required by conventional elemental analyzers. The results of the first applications to amino acids, carbohydrates, and drugs, eluted from various types of HPLC columns, are presented. The wide range of chromatographic methods enables the analysis of compounds never before amenable to isotope ratio mass spectrometry techniques and may lead to the development of many new assays.     

NMR spectra of a microcrystalline protein at 30 kHz MAS

Proteins are not always available in amounts desirable for solid-state magic-angle spinning (MAS) nuclear-magnetic resonance (NMR) spectroscopy. To maximize the signal-to-noise ratio achievable with small samples, the filling factor must be optimized by using small-diameter MAS rotors. These rotors have the added benefit of allowing higher radio frequency field amplitudes during polarization transfer steps and during decoupling periods as well as allowing higher spinning frequencies. We demonstrate the advantages of relatively fast MAS (30 kHz using a 2.5 mm rotor) compared to MAS at 12 kHz for the 10.4 kDa model protein Crh with 93 residues and show that the signal-to-noise ratio in two-dimensional correlation spectra can be significantly improved by taking advantage of optimized pulse sequences available with rapid MAS.     

Electronic States of 1,5-Cyclooctadiyne Radical Cation and of Related Systems: The electronic structure of cis-bent carbon-carbon triple bonds

The photoelectron spectra of 1,5-cyclooctadiyne ( 2 ) and of 1,6-dithiacyclodeca-3,8-diyne ( 3 ) have been recorded. The first four ( 2 ) or six ( 3 ) PE. bands have been assigned as follows; in increasing order of ionization potentials: The relative sequence and the positions of the PE. bands are explained in terms of through-bond and through-space interactions between the basis π-orbitals and σ-orbitals of appropriate symmetry behaviour. An analysis of the PE. spectroscopic data for cyclooctyne ( 1 ) and for ( 2 ) indicates that a cis-bend of the acetylene moiety by θ < 20° leads to a split in energy of the in-plane and out-of-plane basis π-orbitals which is smaller than ∽ 0.2 eV. This is in agreement with the predictions derived from semiempirical models (MINDO/2, SPINDO) and qualitative orbital arguments. However, it is shown by using orbital localization procedures, that the rationales underlying the two semiempirical models differ significantly.