Large-scale carbohydrate analysis by capillary array electrophoresis: part 1. Separation and scale-up

A 96-capillary array electrophoresis (CAE) instrument has been adapted for large-scale mono- and oligosaccharide analysis and characterization. Operational protocols and data processing tools have been developed to optimize the CAE system for this application. Effects of different additives to the running buffer on efficiency and capillary-to-capillary performance reproducibility have been studied.     

Large-scale carbohydrate analysis by capillary array electrophoresis: part 2. Data normalization and quantification

Automated 96-capillary array electrophoresis (CAE) methodology described in the first part of the present work offered large-scale high-performance profiling of oligo- and monosaccharides to fulfill the needs of bioindustrial laboratories. Sensitivity at low nanomolar concentration, good resolving power and reliability achieved in the experiments is invaluable for monitoring reaction products from enzymatic polysaccharide digestion with numerous applications in agricultural, chemical and food industries. In addition to optimization of mono- and oligosaccharide separations in CAE system and necessary operational protocol modifications, capillary-to-capillary and run-to-run variation in migration time and signal intensity necessitated development of data normalization tools. Internal fluorescent standards have been incorporated into the analysis aiding migration time normalization and CAE trace alignment. Data processing, visualization, and programming tools have been developed along with quantification approaches.     

Seiberg-Witten Invariants and Surface Singularities. II: Singularities with Good C*-Action

A previous conjecture is verified for any normal surface singularitywhich admits a good C^*-action. This result connects the Seiberg–Witteninvariant of the link (associated with a certain ‘canonical’spin^c structure) with the geometric genus of the singularity,provided that the link is a rational homology sphere. As an application, a topological interpretation is found ofthe generalized Batyrev stringy invariant (in the sense of Veys)associated with such a singularity. The result is partly based on the computation of the Reidemeister–Turaevsign-refined torsion and the Seiberg–Witten invariant(associated with any spin^c structure) of a Seifert 3-manifoldwith negative orbifold Euler number and genus zero.     

Monitoring of caesium-137 in surface seawater and seafood in both the Irish and North Seas: trends and observations

The objective of this paper is to compile selected caesium-137 concentrations in seafood and seawater (the key OSPAR indicators) from the data submitted by the United Kingdom to the OSPAR Commission. The impact upon the surrounding environment of the Irish Sea and North Sea has been determined from trends of caesium-137 concentration data over time, from the start of the OSPAR evaluation period to the present date. Generally, caesium-137 concentrations, in each of the key OSPAR indicators (by sample type and site locations), have declined in both the Irish and North Sea environments over the long time period.     

Asymptotic Representation of L<Subscript>p</Subscript>-Minimal Polynomials, 1 < p < ∞

While the theory of asymptotics for L₂-minimal polynomials is highly developed, so far not much is known about L_p-minimal polynomials, Indeed, Bernstein gave asymptotics for the minimum deviation, Fekete and Walsh gave nth root asymptotics and, recently, Lubinsky and Saff came up with asymptotics outside the support [-1,1]. But the main point of interest, the asymptotic representation on the support, still remains open. Here we settle it for weight functions of the form where w is positive and on [-1,1] with and 相似文献   

A fully automated 2-D LC-MS method utilizing online continuous pH and RP gradients for global proteome analysis

The conventional 2-D LC-MS/MS setup for global proteome analysis was based on online and offline salt gradients (step and continuous) using strong-cation-exchange chromatography in conjunction with RP chromatography and MS. The use of the online system with step salt elution had the possibility of resulting in peptide overlapping across fractions. The offline mode had the option to operate with continuous salt gradient to decrease peak overlap, but exhibited decreased robustness, lower reproducibility, and sample loss during the process. Due to the extensive washing requirement between the chromatography steps, online continuous gradient was not an option for salt elution. In this report, a fully automated, online, and continuous gradient (pH continuous online gradient, pCOG) 2-D LC-MS/MS system is introduced that provided excellent separation and identification power. The pH gradient-based elution provided more basic peptides than that of salt-based elution. Fraction overlap was significantly minimized by combining pH and continuous gradient elutions. This latter approach also increased sequence coverage and the concomitant confidence level in protein identification. The salt and pH elution-based 2-D LC-MS/MS approaches were compared by analyzing the mouse liver proteome.     

The Effect of Sample Glucose Content on PNGase F-Mediated N-Glycan Release Analyzed by Capillary Electrophoresis

Protein therapeutics have recently gained high importance in general health care along with applied clinical research. Therefore, it is important to understand the structure–function relationship of these new generation drugs. Asparagine-bound carbohydrates represent an important critical quality attribute of therapeutic glycoproteins, reportedly impacting the efficacy, immunogenicity, clearance rate, stability, solubility, pharmacokinetics and mode of action of the product. In most instances, these linked N-glycans are analyzed in their unconjugated form after endoglycosidase-mediated release, e.g., PNGase F-mediated liberation. In this paper, first, N-glycan release kinetics were evaluated using our previously reported in-house produced 6His-PNGase F enzyme. The resulting deglycosylation products were quantified by sodium dodecyl sulfate capillary gel electrophoresis to determine the optimal digestion time. Next, the effect of sample glucose content was investigated as a potential endoglycosidase activity modifier. A comparative Michaelis-Menten kinetics study was performed between the 6His-PNGase F and a frequently employed commercial PNGase F product with and without the presence of glucose in the digestion reaction mixture. It was found that 1 mg/mL glucose in the sample activated the 6His-PNGase F enzyme, while did not affect the release efficiency of the commercial PNGase F. Capillary isoelectric focusing revealed subtle charge heterogeneity differences between the two endoglycosidases, manifested by the lack of extra acidic charge variants in the cIEF trace of the 6His-PNGase F enzyme, which might have possibly influenced the glucose-mediated enzyme activity differences.     

Enantioselective Cyclopropanation Catalyzed by Gold(I)-Carbene Complexes

The formation of polysubstituted cyclopropane derivatives in the gold(I)-catalyzed reaction of olefins and propargylic esters is a potentially useful transformation to generate diversity, therefore any method in which its stereoselectivity could be controlled is of significant interest. We prepared and tested a series of chiral gold(I)-carbene complexes as a catalyst in this transformation. With a systematic optimization of the reaction conditions, we were able to achieve high enantioselectivity in the test reaction while the cis:trans selectivity of the transformation was independent of the catalyst. Using the optimized conditions, we reacted a series of various olefins and acetylene derivatives to find that, although the reactions proceeded smoothly and the products were usually isolated in good yield and with good to exclusive cis selectivity, the observed enantioselectivity varied greatly and was sometimes moderate at best. We were unable to establish any structure-property relationship, which suggests that for any given reagent combination, one has to identify individually the best catalyst.     

Valence Photoionization of Thymine: Ionization Energies,Vibrational Structure,and Fragmentation Pathways from the Slow to the Ultrafast

The photoionization of thymine has been studied by using vacuum ultraviolet radiation and imaging photoelectron photoion coincidence spectroscopy after aerosol flash vaporization and bulk evaporation. The two evaporation techniques have been evaluated by comparison of the photoelectron spectra and breakdown diagrams. The adiabatic ionization energies for the first four electronic states were determined to be 8.922±0.008, 9.851±0.008, 10.30±0.02, and 10.82±0.01 eV. Vibrational features have been assigned for the first three electronic states with the help of Franck–Condon factor calculations based on density functional theory and wave function theory vibrational analysis within the harmonic approximation. The breakdown diagram of thymine, as supported by composite method ab initio calculations, suggests that the main fragment ions are formed in sequential HNCO-, CO-, and H-loss dissociation steps from the thymine parent ion, with the first step corresponding to a retro-Diels–Alder reaction. The dissociation rate constants were extracted from the photoion time-of-flight distributions and used together with the breakdown curves to construct a statistical model to determine 0 K appearance energies of 11.15±0.16 and 11.95±0.09 eV for the m/z 83 and 55 fragment ions, respectively. These results have allowed us to revise previously proposed fragmentation mechanisms and to propose a model for the final, nonstatistical H-loss step in the breakdown diagram, yielding the m/z 54 fragment ion at an appearance energy of 13.24 eV.     

Isothiocyanate controlled architecture,spectroscopic, and magnetic behavior of copper(II) l–arginine complexes

Abstract

We synthesized an l–arginine complex with the formula [Cu(l–Arg)₂(NCS)]·(NCS)·H₂O (1) (l–Arg = l–arginine). Two cis-chelated l–arginine zwitterions form the basal plane, while the weakly N-bonded isothiocyanate is located at the apex of the distorted square pyramidal structure (τ?=?0.143). The non-coordinated NCS^? anions held layers together in a 3-D supramolecular network. The crystal structure, spectroscopic (FT–IR, Raman, NIR–Vis–UV, EPR) and magnetic properties of 1 have been compared with [Cu(l–Arg)(NCS)₂] (2). For 1, two absorptions are observed for ν(C?=?N) stretching vibrations, corresponding to NCS^? ions N-bonded to the central Cu(II) (2077?cm^?1) and in the lattice (2057?cm^?1). In 2 a single band is observed at 2102?cm^?1, indicating equivalent NCS^? ions in the structure. The EPR spectra of complexes show anisotropic signal with g_⊥ and g_|| 2.062, 2.235 (1), and 2.08, 2.225 (2) characteristic for cis-N₂O₂ and N₃O donor sets in the xy plane, respectively. The unpaired electron mainly occupies the d_x2–y2 orbital, also confirmed by the single envelope of d–d bands at ca. 16,000?cm^?1 for 1 and 16,500?cm^?1 for 2. The magnetic properties ofcompounds are characteristic of a very weak antiferromagnetic interaction with J?=??0.055?cm^?1 and J?=??0.096?cm^?1 for 1 and 2, respectively.