A simple gamma-backbone modification preorganizes peptide nucleic acid into a helical structure

Peptide nucleic acid (PNA) is a synthetic analogue of DNA and RNA, developed more than a decade ago in which the naturally occurring sugar phosphate backbone has been replaced by the N-(2-aminoethyl) glycine units. Unlike DNA or RNA in the unhybridized state (single strand) which can adopt a helical structure through base-stacking, although highly flexible, PNA does not have a well-defined conformational folding in solution. Herein, we show that a simple backbone modification at the gamma-position of the N-(2-aminoethyl) glycine unit can transform a randomly folded PNA into a helical structure. Spectroscopic studies showed that helical induction occurs in the C- to N-terminal direction and is sterically driven. This finding has important implication not only on the future design of nucleic acid mimics but also on the design of novel materials, where molecular organization and efficient electronic coupling are desired.     

Adjoint Sensitivity Analysis of a Fluid-Structure Interaction Problem

A fluid-structure mathematical model usually includes parameters whose actual values are known only approximately or can vary around some reference values. The objective of the sensitivity analysis is to determine quantitatively the behavior of the responses of a fluid-structure system locally around a chosen point of the trajectory in the phase-space of parameters and dependent variables. In this work, the response considered is the total mechanical energy of the structure. The sensitivities with respect to all the parameters the fluid-structure system depends on are useful in many situations as well as for optimization purposes. We present the theoretical developments necessary for the application of the adjoint sensitivity analysis methods (ASAM) for the fully coupled governing equations of an aeroelastic system. The algorithm is general and can be applied for any kind of fluid-structure interaction problems. Illustrative numerical examples are presented for the case of typical section with two degrees of freedom. (© 2010 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Group 12 metal aryl selenolates. Crystal and molecular structure of [2-(Et2NCH2)C6H4]2Se2 and [2-(Me2NCH2)C6H4Se]2M (M = Zn, Cd)

Diorganodiselenide [2-(Et₂NCH₂)C₆H₄]₂Se₂ (1) was obtained by hydrolysis/oxidation of the corresponding [2-(Et₂NCH₂)C₆H₄]SeLi derivative. The treatment of [2-(Et₂NCH₂)C₆H₄]₂Se₂ with elemental sodium in THF resulted in [2-(Et₂NCH₂)C₆H₄]SeNa (2). Reactions between alkali metal selenolates [2-(R₂NCH₂)C₆H₄]SeM′ (R = Me, Et; M′ = Li, Na) and MCl₂ (M = Zn, Cd) in a 2:1 molar ratio resulted in the [2-(R₂NCH₂)C₆H₄Se]₂M species [R = Me, M = Zn (3), Cd (4); R = Et, M = Zn (5), Cd (6)]. The new compounds were characterized by multinuclear NMR (¹H, ¹³C, ⁷⁷Se, ¹¹³Cd) and mass spectrometry. The crystal and molecular structures of 1, 3 and 4 revealed monomeric species stabilized by N → Se (for 1) and N → M (for 3 and 4) intramolecular interactions.     

Characterization of Al/Al2O3/NiOx solar absorber obtained by spray pyrolysis

The aim of this paper is to obtain high efficient and inexpensive spectral selective solar absorbers, for solar thermal flat plat collectors using a simple technique – spray pyrolysis deposition (SPD). To achieve maximum solar absorptance and minimum thermal emittance, the following parameters are optimized: the precursor solution concentration and composition, substrate temperature and annealing treatment. The structural and morphological properties of the films were investigated by X-ray diffraction, atomic force microscopy and contact angle measurements. The thermal emittance and solar absorptance of as-deposited films were correlated with the chemical composition, crystalline structure and morphology. The results prove that coatings with excellent spectral selective properties (normal solar absorptance of 0.92 and a normal thermal emittance of 0.03) can be obtained by SPD.     

A class of implicit variational inequalities and applications to frictional contact

This paper deals with the mathematical and numerical analysis of a class of abstract implicit evolution variational inequalities. The results obtained here can be applied to a large variety of quasistatic contact problems in linear elasticity, including unilateral contact or normal compliance conditions with friction. In particular, a quasistatic unilateral contact problem with nonlocal friction is considered. An algorithm is derived and some numerical examples are presented. Copyright © 2009 John Wiley & Sons, Ltd.     

Novel antibiotics: macrocyclic peptides designed to trap Holliday junctions

[reaction: see text] Described are the syntheses of eight macrocyclic peptides designed to trap Holliday junctions in bacteria, thereby inhibiting bacterial growth. These macrocycles were designed from linear dimerized hexapeptides that bind to the C-2 symmetrical Holliday junction. They were synthesized from three monomers using a combinatorial-like strategy that permits elucidation of the monomer role in accumulation of Holliday junctions and antibiotic activity. These macrocycles are an important step in designing and synthesizing a new class of antibiotics.     

Syntheses and chemistry of hypervalent cyclo-R4Sb4, cyclo-(RSbE)n[R = 2-(Me2NCH2)C6H4, E = O, S] and precursors

The cyclostibane R(4)Sb(4)(1)(R = 2-(Me(2)NCH(2))C(6)H(4)) was synthesized by reduction of RSbCl(2) with Mg in THF or with Na in liquid NH(3). The reaction of 1 with [W(CO)(5)(THF)] gives the stibinidene complex RSb[W(CO)(5)](2)(2). RSbCl(2) and (RSbCl)(2)E [E = O (6), E = S (8)] react with KOH or Na(2)S in toluene/water to give the heterocycles (RSbE)(n)[E = O, n= 3 (3); E = S, n= 2 (4)]. The chalcogeno-bridged compounds of the type (RSbCl)(2)E [E = O (6), E = S (8)] were synthesized by reaction of RSbCl(2) with KOH or Na(2)S in toluene/water, but also by reaction of RSbCl(2) with the heterocycles (RSbE)(n). The compounds (RSbI)(2)O (7) and (RSbBr)(2)S (9) were prepared via halogen-exchange reactions between (RSbCl)(2)E and NaI (E = O) or KBr (E = S) or by reactions between RSbI(2) and KOH or RSbBr(2) and Na(2)S. The reaction of cyclo-(RSbS)(2) with W(CO)(5)(THF) in THF results in trapping of the cis isomer in cyclo-(RSbS)(2)[W(CO)(5)](5). The solution behaviour of the compounds was investigated by (1)H and (13)C NMR spectroscopy. The molecular structures of compounds 1-7 and 9 were determined by single-crystal X-ray diffraction.     

SERS assessment of the cancer-specific methylation pattern of genomic DNA: towards the detection of acute myeloid leukemia in patients undergoing hematopoietic stem cell transplantation

In this label-free surface-enhanced Raman scattering (SERS) study of genomic DNA, we demonstrate that the cancer-specific DNA methylation pattern translates into specific spectral differences. Thus, DNA extracted from an acute myeloid leukemia (AML) cell line presented a decreased intensity of the 1005 cm⁻¹ band of 5-methylcytosine compared to normal DNA, in line with the well-described hypomethylation of cancer DNA. The unique methylation pattern of cancer DNA also influences the DNA adsorption geometry, resulting in higher adenine SERS intensities for cancer DNA. The possibility of detecting cancer DNA based on its SERS spectrum was validated on peripheral blood genomic DNA samples from n = 17 AML patients and n = 17 control samples, yielding an overall classification of 82% based on the 1005 cm⁻¹ band of 5-methylcytosine. By demonstrating the potential of SERS in assessing the methylation status in the case of real-life DNA samples, the study paves the way for novel methods of diagnosing cancer.

Graphical abstract

     

Simultaneous Determination of Vitamins D3 (Calcitriol,Cholecalciferol) and K2 (Menaquinone-4 and Menaquinone-7) in Dietary Supplements by UHPLC

The content and composition of dietary supplements is of great interest due to their increasing consumption and variety of available brand offered in the market. Accurate determination of vitamins is important for the improvement of dietary supplement quality and nutrition assessments. In this regard, the simultaneous determination of vitamin D3 (calcitriol—CT and cholecalciferol—CHL) and K2 (menaquinone-4—MK-4 and menaquinone-7—MK-7) in dietary supplements was developed by using ultra-high-pressure liquid chromatography (UHPLC). The overall runtime per sample was above 35 min, with the retention times of 2.40, 6.59, 7.06, and 32.6 min for vitamin D3 (CT and CHL) and vitamin K2 (MK-4 and MK-7), respectively. The limits of detection and limits of quantification for the target nutritional compounds ranged between 0.04–0.05 µg/mL, respectively. The validation results indicated that the method had reasonable linearity (R² ≥ 0.9990), good recovery (>82%), satisfactory intra-day precision (≤1.9%) and inter-day precision (≤3.5%), and high selectivity and specificity. The validated UHPLC method was demonstrated to be precise, accurate, and robust for the simultaneous determination of vitamins D3 (CT and CHL) and K2 (MK-4 and MK-7) in dietary supplements.