Comparison of tumor histology to dynamic contrast enhanced magnetic resonance imaging-based physiological estimates

Purpose

The purpose of this study was to compare histologically determined cellularity and extracellular space to dynamic contrast-enhanced magnetic resonance imaging (DCE MRI)-based maps of a two-compartment model's parameters describing tumor contrast agent extravasation, specifically tumor extravascular extracellular space (EES) volume fraction (v_e), tumor plasma volume fraction (v_p) and volume-normalized contrast agent transfer rate between tumor plasma and interstitium (K_TRANS/V_T).

Materials and Methods

Obtained v_e, v_p and K_TRANS/V_T maps were estimated from gadolinium diethylenetriamine penta-acetic acid DCE T₁-weighted gradient-echo images at resolutions of 469, 938 and 2500 μm. These parameter maps were compared at each resolution to histologically determined tumor type, and the high-resolution 469-μm maps were compared with automated cell counting using Otsu's method and a color-thresholding method for estimated intracellular (V_{intracellular}) and extracellular (V_{extracellular}) space fractions.

Results

The top five K_TRANS/V_T values obtained from each tumor at 469 and 938 μm resolutions are significantly different from those obtained at 2500 μm (P<.0001) and from one another (P=.0014). Using these top five K_TRANS/V_T values and the corresponding tumor EES volume fractions v_e, we can statistically differentiate invasive ductal carcinomas from noninvasive papillary carcinomas for the 469- and 938-μm resolutions (P=.0017 and P=.0047, respectively), but not for the 2500-μm resolution (P=.9008). The color-thresholding method demonstrated that v_e measured by DCE MRI is statistically similar to histologically determined EES. The V_{extracellular} obtained from the color-thresholding method was statistically similar to the v_e measured with DCE MRI for the top 10 K_TRANS/V_T values (P>.05). DCE MRI-based K_TRANS/V_T estimates are not statistically correlated with histologically determined cellularity.

Conclusion

DCE MRI estimates of tumor physiology are a limited representation of tumor histological features. Extracellular spaces measured by both DCE MRI and microscopic analysis are statistically similar. Tumor typing by DCE MRI is spatial resolution dependent, as lower resolutions average out contributions to voxel-based estimates of K_TRANS/V_T. Thus, an appropriate resolution window is essential for DCE MRI tumor diagnosis. Within this resolution window, the top K_TRANS/V_T values with corresponding v_e are diagnostic for the tumor types analyzed in this study.     

Inplace 2D matching in compressed images

The compressed matching problem is the problem of finding all occurrences of a pattern in a compressed text. In this paper we discuss the 2-dimensional compressed matching problem in Lempel–Ziv compressed images. Given a pattern P of (uncompressed) size m×m, and a text T of (uncompressed) size n×n, both in 2D-LZ compressed form, our algorithm finds all occurrences of P in T. The algorithm is strongly inplace, that is, the amount of extra space used is proportional to the best possible compression of a pattern of size m². The best compression that the 2D-LZ technique can obtain for a file of size m² is O(m). The time for performing the search is O(n²) and the preprocessing time is O(m³). Our algorithm is general in the sense that it can be used for any 2D compression which can be sequentially decompressed in small space.     

Asynchronous and corrected-asynchronous finite difference solutions of PDEs on MIMD multiprocessors

A major problem in achieving significant speed-up on parallel machines is the overhead involved with synchronizing the concurrent processes. Removing the synchronization constraint has the potential of speeding up the computation, while maintaining greater computation flexibility (e.g. differences in processors speed; differences in the data input to processors). We construct asynchronous (AS) finite difference schemes for the solution of PDEs by removing the synchronization constraint. We analyze the numerical properties of these schemes. Based on the analysis, we develop corrected-asynchronous (CA) finite difference schemes which are specifically constructed for an asynchronous processing. We present asynchronous (AS) and corrected-asynchronous (CA) finite difference schemes for the multi-dimensional heat equation. Although our discussion concentrates on the Euler scheme it should serve only as a sample, as it can be extended to other schemes and other PDEs.These schemes are implemented on the shared-memory multi-userSequent Balance machine. Numerical results for one and two dimensional problems are presented. It is shown experimentally that synchronization penalty can be about 50% of run time: in most cases, the asynchronous scheme runs twice as fast as the parallel synchronous scheme. In general, the efficiency of the parallel schemes increases with processor load, with the time-level, and with the problem dimension. The efficiency of the AS may reach 90% and over, but it provides accurate results only for steady-state values. The CA, on the other hand, is less efficient but provides more accurate results for intermediate (non steady-state) values. The results show the potential of developing asynchronous finite deference schemes for steady-state as well as non steadystate problems.This research was partially supported by a grant from The Basic Research Foundation administrated by The Israel Academy of Sciences and Humanities.A reduced version of the paper was presented at the 4th SIAM Conference on Parallel Processing for Scientific Computing, Dec. 11–13, 1989, Chicago, USA.The work by this author was supported by research grant 337 of the Israeli National Council for Research and Development in the years 1990–1991.This research was supported by the National Aeronautics and Space Administration under NASA Contract No. NASI-18107 while the author was in residence at the Institute for Computer Applications in Sciences and Engineering (ICASE), NASA Langley Research Center, Hampton, VA 23665, USA.     

Visual Speech Recognition with Lightweight Psychologically Motivated Gabor Features

Extraction of relevant lip features is of continuing interest in the visual speech domain. Using end-to-end feature extraction can produce good results, but at the cost of the results being difficult for humans to comprehend and relate to. We present a new, lightweight feature extraction approach, motivated by human-centric glimpse-based psychological research into facial barcodes, and demonstrate that these simple, easy to extract 3D geometric features (produced using Gabor-based image patches), can successfully be used for speech recognition with LSTM-based machine learning. This approach can successfully extract low dimensionality lip parameters with a minimum of processing. One key difference between using these Gabor-based features and using other features such as traditional DCT, or the current fashion for CNN features is that these are human-centric features that can be visualised and analysed by humans. This means that it is easier to explain and visualise the results. They can also be used for reliable speech recognition, as demonstrated using the Grid corpus. Results for overlapping speakers using our lightweight system gave a recognition rate of over 82%, which compares well to less explainable features in the literature.     

The complex networks approach for authorship attribution of books

Authorship analysis by means of textual features is an important task in linguistic studies. We employ complex networks theory to tackle this disputed problem. In this work, we focus on some measurable quantities of word co-occurrence network of each book for authorship characterization. Based on the network features, attribution probability is defined for authorship identification. Furthermore, two scaling exponents, q-parameter and α-exponent, are combined to classify personal writing style with acceptable high resolution power. The q-parameter, generally known as the nonextensivity measure, is calculated for degree distribution and the α-exponent comes from a power law relationship between number of links and number of nodes in the co-occurrence network constructed for different books written by each author. The applicability of the presented method is evaluated in an experiment with thirty six books of five Persian litterateurs. Our results show high accuracy rate in authorship attribution.     

Evaluating the Influence of Warmup on Singing Voice Quality Using Acoustic Measures

Vocal warmup is generally accepted as vital for singing performance. However, only a limited number of studies have evaluated this effect quantitatively. In this study, we evaluated the effect of vocal warmup on voice production, among young female singers, using a set of acoustic parameters. Warmup reduced frequency-perturbation (p < 0.001) and amplitude-perturbation values (p < 0.05). In addition, warmup increased singer's formant amplitude (p < 0.05) and improved noise-to-harmonic ratio (p < 0.05). Tone-matching accuracy, however, was not affected by warmup. The effect of vocal warmup on frequency-perturbation parameters was more evident among mezzo-soprano singers than it was among soprano singers. It was also more evident in the low pitch-range than in the higher pitch-ranges (p < 0.05). The results of this study provide valid support for the advantageous effect of vocal warmup on voice quality and present acoustic analysis as a valuable and sensitive tool for quantifying this effect.     

Teleparallel versions of Friedmann and Lewis–Papapetrou spacetimes

This paper is devoted to investigating the teleparallel versions of the Friedmann models as well as the Lewis–Papapetrou solution. We obtain the tetrad and the torsion fields for both spacetimes. It is shown that the axial-vector vanishes for the Friedmann models. We discuss the different possibilities for the axial-vector, depending on the arbitrary functions ω and ψ in the Lewis–Papapetrou metric. The vector related to spin has also been evaluated.     

Polyelectrolyte Nanocomposite Membranes Using Imidazole-Functionalized Nanosilica for Fuel Cell Applications

The preparation and characterization of a new type of nanocomposite polyelectrolyte membrane, based on DuPont Nafion/imidazole-modified nanosilica (Im-Si), for direct methanol fuel cell applications is described. Related to the interactions between the protonated imidazole groups, grafted on the surface of nanosilica, and negatively charged sulfonic acid groups of Nafion, new electrostatic interactions can be formed in the interface of Nafion and Im-Si which result in both lower methanol permeability and also higher proton conductivity. Physical characteristics of these manufactured nanocomposite membranes were investigated by scanning electron microscopy, thermogravimetry analysis, differential scanning calorimetry, Fourier transform infrared spectroscopy, water uptake, methanol permeability, and ion-exchange capacity, as well as proton conductivity. The Nafion/Im-Si membranes showed higher proton conductivity, lower methanol permeability and, as a consequence, higher selectivity parameter in comparison to the neat Nafion or Nafion/silica membranes. The obtained results indicated that the Nafion/Im-Si membranes could be utilized as promising polyelectrolyte membranes for direct methanol fuel cell applications.