Maintaining the predictive abilities of multivariate calibration models by spectral space transformation

In quantitative on-line/in-line monitoring of chemical and bio-chemical processes using spectroscopic instruments, multivariate calibration models are indispensable for the extraction of chemical information from complex spectroscopic measurements. The development of reliable multivariate calibration models is generally time-consuming and costly. Therefore, once a reliable multivariate calibration model is established, it is expected to be used for an extended period. However, any change in the instrumental response or variations in the measurement conditions can render a multivariate calibration model invalid. In this contribution, a new method, spectral space transformation (SST), has been developed to maintain the predictive abilities of multivariate calibration models when the spectrometer or measurement conditions are altered. SST tries to eliminate the spectral differences induced by the changes in instruments or measurement conditions through the transformation between two spectral spaces spanned by the corresponding spectra of a subset of standardization samples measured on two instruments or under two sets of experimental conditions. The performance of the method has been tested on two data sets comprising NIR and MIR spectra. The experimental results show that SST can achieve satisfactory analyte predictions from spectroscopic measurements subject to spectrometer/probe alteration, when only a few standardization samples are used. Compared with the existing popular methods designed for the same purpose, i.e. global PLS, univariate slope and bias correction (SBC) and piecewise direct standardization (PDS), SST has the advantages of implementation simplicity, wider applicability and better performance in terms of predictive accuracy.     

Development of hybrid elution systems for efficient purification of stilbenoids using centrifugal partition chromatography coupled to mass spectrometry

The phytochemical study of the root extract of the stilbenoid-rich Vitis riparia × Vitis berlandieri grapevine was carried out by centrifugal partition chromatography (CPC). For this reason, we developed a new elution mode we named back-step, which allowed us to obtain cleaner fractions and a more efficient separation process when used in conjunction with a classical elution approach. Three hydroxystilbenes: (E)-resveratrol, (E)-?-viniferin and (E)-vitisin C, with greater than 90% purity were thus obtained through such process, with minimal sample handling and purification steps. Online coupling of CPC to ESI mass spectrometry was used for optimization of the separation parameters and to facilitate the characterization of the stilbenoids. This study details the first phytochemical investigation of stilbenoids from the hybrid species together with a new elution mode able to widen the range of ARIZONA biphasic systems.     

Tools for micropatterning epithelial cells into microcolonies on transwell filter substrates

Despite the importance of epithelial tissue in most major organs there have been limited attempts to tissue engineer artificial epithelium. A key feature of mature epithelium is the presence of an apical-basal polarization, which develops over 7-20 days in culture. Currently, the most widely used 2D system to generate polarized epithelium in vitro involves the filter insert culture system, however this system is expensive, laborious and requires large numbers of cells per sample. We have developed a set of micropatterning techniques to spatially control the organization of epithelial cells into microsheets on filter inserts under the culture conditions necessary to induce epithelial cell polarization. Micropatterning improves cell uniformity within each microsheet, allows multiple sheet analysis on one filter insert, and reduced cell number requirements. We describe an agarose patterning method that allows maintenance of cell patterns for over 15 days, the time necessary to induce apical-basal polarization. We also describe a Parafilm? patterning method that allows patterning for 5 to 15 days depending on cell type and only allows the generation of stripes and circular microsheets. The parafilm? method however is extremely straightforward and could be easily adopted by any laboratory without the need of access to specialized microfabrication equipment. We also demonstrate that micropatterning epithelial cells does not alter the localization of the apical-basal marker ZO-1 or the formation of cilia, a marker of epithelium maturation. Our methods provide a novel tool for studying epithelial biology in polarized epithelium microsheets of controlled size.     

Total synthesis and stereochemical assignment of burkholdac B, a depsipeptide HDAC inhibitor

Three diastereomers of burkholdac B were prepared by total synthesis, enabling the full stereochemical assignment of the natural product. It is proposed that burkholdac B is identical to thailandepsin A independently isolated by Cheng from the same strain of Burkholderia thailandensis . Burkholdac B is the most potent among depsipeptide histone deacetylase inhibitors in growth inhibition of the MCF7 breast cancer cell line with an IC(50) of 60 pM.     

Divergent reaction pathways of a cationic intermediate: rearrangement and cyclization of 2-substituted furyl and benzofuryl enones catalyzed by iridium(III)

In contrast to 2-substituted pyrrole enones, furyl and benzofuryl enones do not undergo the Nazarov electrocyclization. Instead, these furyl and benzofuryl enones exhibit unusual rearrangement sequences in the presence of catalytic amounts of [IrBr(CO)(DIM)((R)-(+)-BINAP)](SbF(6))(2) (1; DIM = diethylisopropylidene malonate) and AgSbF(6) (1:1). A 1,2-H shift followed by intramolecular Friedel-Crafts alkylation leads to synthetically valuable cyclohexanones with furanylic quaternary centers. The electrophilicity of 1 is essential for this rearrangement.     

Metallosurfactants of bioinorganic interest: Coordination-induced self assembly

This review covers selected surfactant ligands that undergo a change in aggregate morphology upon coordination of a metal ion, with a particular focus on coordination-induced micelle-to-vesicle transitions. The surfactants include microbially produced amphiphilic siderophores, as well as synthetic amphiphilic ligands. The mechanism of the metal-induced phase change is considered in light of the coordination chemistry of the metal ions, the nature of the ligands, and changes in molecular geometry that result from metal coordination. Of particular interest are biologically produced amphiphiles that coordinate transition metal ions and amphiphilic ligands of relevance to bioinorganic chemistry.     

Peptide coated gold nanoparticles that bind lanthanide ions

Water soluble gold nanoparticles are coated with peptides bearing a dithiol surface active group for studies of lanthanide binding; characteristic red luminescence is observed upon europium binding to the nanoparticles.     

Hematite and carbonaceous materials in geological samples: a cautionary tale

Over the last few decades Raman spectroscopy has been increasingly applied as an analytical tool in geoscience research. Raman spectroscopy is a powerful tool for geologists as it is non-destructive, requires little to no sample preparation, and can be undertaken in situ on various irreplaceable geological samples. Also, this technique is useful in the identification of minerals and geo-organic material. However, despite this ease of application, there are some facets of Raman spectroscopy data that can lead to erroneous interpretations. For instance, there is much confusion in the geological literature distinguishing the difference between the hematite vibrational mode at ca. 1320 cm(-1) and the disordered sp(2) carbonaceous material D band at 1340 cm(-1). Furthermore, geologists will often collect 2 spectra, one in the mineral finger print region (200-800 cm(-1)) and then a spectrum in the carbon first-order region (1000-1800 cm(-1)), rather than performing a full-region scan. This allows the misidentification of the hematite mode at 1320 cm(-1) as the D band from disordered carbonaceous material. Here we show that it is best practice for geologists to collect spectra between 200 and 1800 cm(-1) to better distinguish between hematite and disordered carbonaceous material, materials that often co-occur in geological samples.     

Templated assembly of organic-inorganic materials using the core shell structure of the P22 bacteriophage

Biomimetic chemistry offers new approaches to supramolecular materials synthesis and assembly. We have demonstrated that an assembled viral protein cage, comprising an organic core-shell structure, can be used as a template for the size constrained synthesis of Fe(2)O(3). Particle nucleation is directed by the inner scaffold protein layer, while the size constraints are determined by the outer capsid layer.