Cyclic peptide nanocapsule as ion carrier for halides: a theoretical survey

In this work, the encapsulations of halide ions including F^?, Cl^?, and Br^? by cyclic peptide nanocapsule as ion carrier (F^?, Cl^?, and Br^? @(Ala4...Ala4)) were investigated using the dispersion corrected density functional theory (DFT) employing CAM-B3LYP functional and the 6–311?+?G (d, p) basis set in the gas phase. The electronic binding energy (E_bind), binding enthalpy (H_bind), and binding Gibbs free energy (G_bind) for each anion were calculated and showed that the stability order of the complexes based on their calculated E_bind is F^??>?Cl^??>?Br^? @(Ala4...Ala4). The calculated value of G_bind for F^? @(Ala4...Ala4) was ??29.77 kcal/mol showing the formation of this complex is thermodynamically favorable while the formation of Br^? @(Ala4...Ala4) is 14.35 kcal/mol which shows that the encapsulation of Br^? is not possible. The calculated value of G_bind for Cl^? @(Ala4...Ala4) was ??0.57 kcal/mol which shows that Cl^? ion can be reversibly stored inside the nanocapsule. The NBO analysis was also performed to investigate the charge transfer between two cyclic peptides in the complexes and also between the anion and the nanocapsule. The NBO analysis showed that the strongest hydrogen bonds between two cyclic peptides are in the complex.     

Magnetic Field-Assisted Direct Immersion SPME of Endogenous Aldehydes in Human Urine

Direct immersion solid-phase microextraction (DI-SPME) is an effective microsampling strategy for polar and ionic species in aqueous media. Nevertheless, the fiber coating is in direct contact with sample solution and affected by its conditions. To compensate this limitation and to improve the extraction efficiency, a magnetic fiber coating was prepared and employed for DI-SPME sampling under the enhancing effect of a magnetic field. Magnetic iron oxide core–shell silica nanoparticles were synthesized and embedded in polypyrrole using an in situ electropolymerization method along with simultaneous coating on the surface of a platinized stainless-steel fiber. It was then applied for magnetic-assisted DI-SPME (MA-DI-SPME) sampling of endogenous aldehydes in human urine. Sample solution pH, the magnetic field intensity, ionic strength and extraction time were evaluated as the important affecting variables. Limits of detection were obtained 0.01–0.1 ng mL^?1; the calibration graphs were linear over the range of 0.1–10000 ng mL^?1. The inter-fiber (fiber-to-fiber) reproducibility was found to be 10.7–12.5%. Matrix effect from urine samples was not observed at concentration levels of 0.2, 2, and 8 µg mL^?1. The results showed that magnetic field increased the efficiency of DI-SPME method about two to four times. The developed strategy was successfully applied for the extraction and quantification of hexanal and heptanal (as the most important aldehyde biomarkers) in urine samples.

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Iodine-catalyzed tandem oxidative coupling reaction: A one-pot strategy for the synthesis of new coumarin-fused pyrroles

The simple and facile strategy for the synthesis of 2,3-disubstituted-chromeno[4,3-b]pyrrole-4(1H)-ones has been established. This method describes the Kornblum oxidation reaction of acetophenones, followed by the Knoevenagle treatment of the resulted (het)arylglyoxals with active methylene compounds and consequently iodine-activated Michael type reaction with 4-amino coumarin in a one-pot manner to afford disubstituted chromeno[4,3-b]pyrrole-4(1H)-one derivatives.     

Effect of silver nanoparticles concentration on the metal enhancement and quenching of ciprofloxacin fluorescence intensity

Concentration effect of silver nanoparticles (AgNPs) on the photophysical properties of ciprofloxacin (Cip) have been investigated using optical absorption and fluorescence techniques. When performed AgNPs solution was added to the Cip solution, metal-enhanced fluorescence intensity and a blue-shift of 20 nm in the maximum emission spectra of Cip has been observed. The enhanced intensity of this system is strongly dependent on the AgNPs concentration and largest at the 6.0 × 10^?6 mol L^?1. With increase of AgNPs concentration, quenching of fluorescence is observed. Stern–Volmer quenching constants have been calculated at four temperatures. The results show the quenching constants are directly correlated with temperature. It indicates the quenching mechanism is the dynamic quenching in nature rather than static quenching. From which we determined the activation energy for the quenching of Cip-AgNPs to be about 31.1 kJ mol^?1. In addition, in the presence of optimum AgNPs concentration, a sensitive fluorimetric method for the determination of ciprofloxacin at the range 5.0 × 10^?7–3.0 × 10^?5 mol L^?1 and the detection limit of 2 × 10^?8 mol L^?1 in solution is proposed.     

Selective and mild oxidation of sulfides to sulfoxides by H_2O_2 using DBUH-Br_3 as catalyst

<正>DBUH-Br_3 catalyzed selective conversion of sulfides to sulfoxides in the presence of H_2O_2 as oxidizing agent is described.The reaction was performed selectively at room temperature and relatively short reaction times.     

Preparation and biological evaluation of radiogallium labeled glucagon for SPECT imaging

In this work, recently prepared ⁶⁷Ga-labeled glucagon (⁶⁷Ga-DTPA-GCG) for imaging studies (radiochemical purity >94%; HPLC, S.A. 296–370 GBq/mM) was used in biological studies. The wild-type rat biodistribution results, 2 h post injection, demonstrated high tissue:muscle ratios for target tissues (liver, kidney, heart, spleen, fat intestine stomach and pancreas), 234, 18.45, 7.12, 1.75, 128.7, 4.9, 6.3 and 1.11, respectively. The tracer binding capacity using freshly prepared rat brain homogenate demonstrated significant specific binding of the tracer to neuronal GCG receptors (⁶⁷Ga-DTPA-GCG/⁶⁷Ga:3 and ⁶⁷Ga-DTPA-GCG/⁶⁷GaDTPA:2.2 at 90 min). SPECT images also demonstrated target specific binding of the tracer at 4 h. The data suggests the tracer is accumulated in GCGR rich tissues 2–4 h post injection, suggesting potentials of the tracer for future imaging studies in glocagonoma models.     

Effect of hydrogen bonds on pKa values: importance of networking

The pK(a) of an acyclic aliphatic heptaol ((HOCH(2)CH(2)CH(OH)CH(2))(3)COH) was measured in DMSO, and its gas-phase acidity is reported as well. This tertiary alcohol was found to be 10(21) times more acidic than tert-butyl alcohol in DMSO and an order of magnitude more acidic than acetic acid (i.e., pK(a) = 11.4 vs 12.3). This can be attributed to a 21.9 kcal mol(-1) stabilization of the charged oxygen center in the conjugate base by three hydrogen bonds and another 6.3 kcal mol(-1) stabilization resulting from an additional three hydrogen bonds between the uncharged primary and secondary hydroxyl groups. Charge delocalization by both the first and second solvation shells may be used to facilitate enzymatic reactions. Acidity constants of a series of polyols were also computed, and the combination of hydrogen-bonding and electron-withdrawing substituents was found to afford acids that are predicted to be extremely acidic in DMSO (i.e., pK(a) < 0). These hydrogen bond enhanced acids represent an attractive class of Br?nsted acid catalysts.     

Supported lipopolysaccharide bilayers

In this report, the formation of supported lipopolysaccharide bilayers (LPS-SLBs) is studied with extracted native and glycoengineered LPS from Escherichia coli ( E. coli ) and Salmonella enterica sv typhimurium ( S. typhimurium ) to assemble a platform that allows measurement of LPS membrane structure and the detection of membrane tethered saccharide-protein interactions. We present quartz crystal microbalance with dissipation monitoring (QCM-D) and fluorescence recovery after photobleaching (FRAP) characterization of LPS-SLBs with different LPS species, having, for example, different molecular weights, that show successful formation of SLBs through vesicle fusion on SiO(2) surfaces with LPS fractions up to 50 wt %. The thickness of the LPS bilayers were investigated with AFM force-distance measurements which showed only a slight thickness increase compared to pure POPC SLBs. The E. coli LPS were chosen to study the saccharide-protein interaction between the Htype II glycan epitope and the Ralstonia solanacearum lectin (RSL). RSL specifically recognizes fucose sugars, which are present in the used Htype II glycan epitope and absent in the epitopes LPS1 and EY2. We show via fluorescence microscopy that the specific, but weak and multivalent interaction can be detected and discriminated on the LPS-SLB platform.     

Efficient RuIII-catalyzed synthesis of 9-aryl-9H-xanthene-3,6-diols as precursors to fluorones

Efficient condensation of resorcinol and various aromatic aldehydes in the presence of RuCl₃nH₂O as a homogeneous catalyst under reflux conditions was investigated.It was found that a very simple method afforded good to excellent yields of the desired products.     

Molecular structure and character of bonding of mono and divalent metal cations (Li+, Na+, K+, Mg2+, Ca2+, Zn2+, and Cu+) with guanosine: AIM and NBO analysis

The B3LYP/6-311++G (d,p) density functional approach was used to study the gas-phase metal affinities of Guanosine (ribonucleoside) for the Li⁺, Na⁺, K⁺, Mg²⁺, Ca²⁺, Zn²⁺, and Cu⁺ cations. In this study we determine coordination geometries, binding strength, absolute metal ion affinities, and free energies for the most stable products. We have also compared the results for Guanosine, with our previously reported results for 2′-Deoxyguanosine. Based on the results, it is obvious that MIA is strongly dependent on the charge-to-size ratio of the cation. Guanosine interacts more strongly with Zn²⁺ than do with Mg²⁺, Ca²⁺, and Cu⁺ and therefore stronger interactions lead to higher MIA. In both free molecules and their complexes, the Syn orientation of the base is stabilized by an intramolecular O5′–H···N3 hydrogen bond and the anti orientation of the base is stabilized by an intramolecular C–H···O hydrogen bond formed between the (C8-H8) and the O5′ atom of the sugar moiety. It is also interesting to mention that linear correlation between calculated MIA values and the atomic numbers (Z) of the metal ions of Li⁺, Na⁺, and K⁺ were found. Furthermore, the influences of metal cationization on the strength of the N-glycosidic bond, torsion angles, angle of pseudorotation (P), and intramolecular C–H···O and O–H···O hydrogen bonds have been studied. Natural bond orbital (NBO) analysis was performed to calculate the charge transfer and natural population analysis of the complexes. Quantum theory of atoms in molecules (QTAIM) was also applied to determine the nature of interactions.