Inelastic incoherent neutron scattering measurements of intact cells and tissues and detection of interfacial water

We have previously used inelastic incoherent neutron scattering spectroscopy to investigate the properties of aqueous suspensions of biomolecules as a function of hydration. These experiments led to the identification of signals corresponding to interfacial (hydration) water at low water content. A prediction from these studies was that in the crowded environment inside living cells, a significant proportion of the water would be interfacial, with profound implications for biological function. Here we describe the first inelastic incoherent neutron scattering spectroscopy studies of living cells and tissues. We find that the interfacial water signal is similar to that observed for water interacting with purified biomolecules and other solutes, i.e., it is strongly perturbed in the librational and translational intermolecular optical regions of the spectrum at 20-150 meV. The ratio of interfacial water compared to total water in cells (approximately 30%) is in line with previous experimental data for hydration water and calculations based on simple assumptions.     

New designs for inhibitors of the NF-κB: DNA binding

We present a series of new inhibitors of the association between nuclear factor kappa B (NF-B) and the corresponding B site in DNA. They were designed using the lead compound 15-deoxy-^12,14 -prostaglandin J₂ (PGJ2), which is a natural product with demonstrated inhibitory efficiency for this system. First, the binding mode of PGJ2 to NF-B was unraveled by GOLD docking calculation. Subsequently, substitutions were made to PGJ2 to optimize its association with NF-B. Care was taken not to strongly increase the reactivity of the new compounds, and to keep the overall shape, size and hydrophilicity of the lead compound, which should render them a similar bioavailability. Molecular mechanics calculations were performed to decide on the suitability of the substitutions, and to evaluate the energies of association with NF-B. Density functional theory calculations were performed also to study the overall reactivity of the substituted drugs towards NF-B. Important general conclusions were obtained, concerning the improvement of these natural inhibitors; namely, a set of rational methodologies were deduced to improve the association between the PGJ2 derivatives and NF-B, and their efficiency demonstrated by generating a set of substituted complexes, some of them with a very much increased affinity for NF-B, opening new doors to enlarge the therapeutic capabilities of this class of drugs.     

Calorimetric determination of the acidic character of amorphous and crystalline aluminosilicates

Aluminosilicates can present different structures such as crystalline true zeolite molecular sieves or amorphous silica–aluminas. With a large surface area available, both can be involved as catalysts, adsorbents or catalyst supports, and the determination of their surface acidic properties is an important parameter in the study of such materials.

The number, strength and strength distribution of the acidic sites were determined using microcalorimetry linked to a volumetric line. Ammonia was used as a basic probe molecule. The adsorption temperatures ranged from 353 K up to 473 K. The samples consisted of two amorphous silica–aluminas (Si/Al ≈ 6.5) and three microporous zeolites H-β, H-ZSM-5 and H-MCM-22 with similar Si/Al ratios (Si/Al ≈ 13).

The differential heats of ammonia adsorption versus coverage and the corresponding isotherms are given. The H-ZSM-5, H-MCM-22, H-β samples display a plateau of constant adsorption heats near 150 kJ mol⁻¹, while the silica–alumina samples present continuously decreasing heats from 150 kJ mol⁻¹ at zero coverage to 40 kJ mol⁻¹ at high coverage, due to their surface heterogeneity. For amorphous silica–aluminas, the number of acid sites is dependent of the aluminum distribution at the surface.

The differences observed in the adsorption behavior of ammonia over the three zeolites arise from differences in their morphology, i.e. the total free volumes, pore geometries and electric field gradients at the adsorption sites. The adsorption isosteres have also been calculated from the adsorption isotherms, and the isosteric heats of adsorption have been compared with the heats measured by calorimetry.     

Copper determination in biological materials by ETAAS using W-Rh permanent modifier

A tungsten-rhodium treatment on the integrated platform of a transversely heated graphite atomiser was used as a permanent chemical modifier for the determination of copper in biological materials by using digested samples as well as slurry sampling in electrothermal atomic absorption spectrometry. The W-Rh permanent modifier was as efficient as Pd+Mg(NO(3))(2) conventional modifier for obtaining good Cu thermal stabilisation in the digested and slurry samples. The permanent W-Rh modifier remained stable by approximately 300 and 250 firings when 20 mul of digested sample and 20 mul of slurry were delivered into the atomiser, respectively. In addition, the permanent modifier increased the tube lifetime up to 1370 and 744 analytical measurements in the digested and slurry samples, respectively. Also, when the W-Rh permanent modifier was employed, there was less variation of the slope of the analytical curves during the total atomiser lifetime, resulting in a decreased need of re-calibration during routine analysis, increasing the sample throughput, and consequently diminishing the variable analytical costs. Detection limits obtained with W-Rh permanent modifier were 0.64 and 0.33 mug g(-1) Cu for digested (dilution factor 100 ml g(-1)) and 1.0% m/v slurries of biological materials, respectively. Results for the determination of copper in the samples were in agreement with those obtained with decomposed sample solutions by using Pd+Mg(NO(3)), since no statistical differences were found after applying the paired t-test at the 95% level.     

Hydrolysis of new phthalimide-derived esters catalyzed by immobilized lipase

The last step of the production of four phthalimide-derived acids, designed to act as antiasthma drugs, was performed by enzymatic hydrolysis of the respective methyl or ethyl esters. The esters 4-ethyl-[2-(1,3-dioxo-1,3-dihydro-2-isoindoylyl)]-phenoxyacetic methyl ester (PHT-MET), 4-ethyl-[2-(1,3-dioxo-1,3-dihydro-2-isoindoylyl)]-phenoxyacetic ethyl ester, 4-(1,3-dioxo-1,3-dihydro-2-isoindoylyl)-phenoxyacetic ethyl ester, and 2-(1,3-dioxo-1, 3-dihydro-2-isoindoylyl)-phenoxyacetic ethyl ester were hydrolyzed by immobilized lipase. The enzymatic reaction could be used only to produce the desired 4-substituted compounds. The best result that was found to hydrolysis of PHT-MET, and, therefore, that ester was selected for optimization experiments in a three-phase system. Reactions were performed with solid biocatalyst (Lipozyme® RM IM), organic solvent phase (ethyl acetate), and aqueous phase (saturated Na₂CO₃ solution). To optimize the reaction conditions, an experimental design optimization procedure was used. The variables studied were the amount of enzyme, the temperature, and the volume of the aqueous solution. Time course experiments were then performed for different initial enzyme concentrations (0.5, 0.9, and 1.4 U_H/mL of solvent). The optimized reaction conditions found were 20 mg of Lipozyme (0.9 U_H/mL_solvent) and 5.0 mL of Na₂CO_3(sat) at 40°C for 6 h.     

2,2,4,4‐Tetra‐tert‐butyl‐1,3,5,2,4‐benzotrioxadisilepine‐7‐carbaldehyde

The mol­ecule of the title compound, C₂₃H₄₀O₄Si₂, features an approximate non‐crystallographic C₂ symmetry axis. The aldehyde group is disordered over two positions with similar occupancies. The geometry of the isolated mol­ecule was studied by ab initio quantum mechanical calculations employing a mol­ecular orbital Hartree–Fock method. The calculations reproduce well the equilibrium geometry but slightly overestimate the value of the Si—O bond lengths of the trioxadisilepine ring.     

Calorimetric study of room temperature adsorption of N2O and CO on Cu(II)-exchanged ZSM5 zeolites

Copper ion-exchanged ZSM5 zeolites have been prepared with different cooper loadings from under- to over-exchanged levels. The adsorptions of N₂O and CO at 303 K have been studied using calorimetric method and infrared spectroscopy. The samples were additionally characterised by ammonia adsorption at 423 K. The active sites for both N₂O and CO are Cu(I) ions, which were formed as a result of pre-treatment in vacuum at 673 K.

Room temperature adsorption of nitrous oxide at low equilibrium pressures (up to 66.7 Pa) resulted in small amounts of chemisorbed N₂O (<0.2 molecule per one Cu ion). Differential heats of N₂O adsorption between 80 and 30 kJ/mol were obtained. Differential heats of CO adsorption between 140 and 40 kJ/mol were obtained. The obtained amounts of chemisorbed species in the investigated systems and the values of differential heats of both nitrous oxide and carbon monoxide demonstrate the dependence on the copper content.     

Development and validation of a rapid RP‐HPLC method for analysis of (−)‐copalic acid in copaíba oleoresin

The Copaifera species (Leguminoseae) are popularly known as ‘copaíba’ or ‘copaíva’ and are grown in the states of Amazonas, Pará and Ceará in northern Brazil. The oleoresins obtained from these species have been extensively used owing to their pharmacological potential and their application in cosmetic and pharmaceutical preparations. In the present study, the development and validation of a novel, rapid and efficient RP‐HPLC methodology for the analysis of the diterpene (?)‐copalic acid (CA), pointed out as the only chemical marker of the Copaifera genus, are described. The regression equation (Y = 26,707x ? 29,498) was obtained with good linearity (r² = 0.9993) and the limits of quantification and detection were 9.182 and 3.032 µg/mL, respectively. The precision and the accuracy of the method were adequate (lower than 4%). Finally, the validation parameters evaluated were satisfactorily met, so the developed method represents a suitable tool for application in the quality control of such natural products. Further studies aiming to develop analytical methodologies for each Copaifera species using a more representative number of chemical markers should be performed. Copyright © 2012 John Wiley & Sons, Ltd.