The unusual hydrogen‐deuterium exchange of α‐carbon protons in N‐substituted glycine‐containing peptides

Hydrogens connected to α‐carbon (α‐C) of amino acid residues are usually resistant to hydrogen‐deuterium exchange (HDX) unless reaction conditions promote racemization. Although N‐methylglycine (sarcosine) residue has been found in biologically active peptide such as cyclosporine, to the best of our knowledge, the HDX of α‐C protons of this residue was not explored yet. Here, we presented a new and efficient methodology of α‐C deuteration in sarcosine residues under basic aqueous conditions. The deuterons, introduced at α‐C atom, do not undergo back‐exchange in acidic aqueous solution. The electrospray ionization‐MS and MS/MS experiments on proposed model peptides confirmed the HDX at α‐C and revealed the unexpected hydrogen scrambling in sarcosine‐containing peptides. Although the observed HDX of α‐C protons is only successful in N‐acylglycine when the amide possesses a certain degree of alkylation, it offers a new approach to the analysis of sarcosine‐containing peptides such as cyclosporine. Copyright © 2014 John Wiley & Sons, Ltd.     

Modification of niobium surfaces using plasma electrolytic oxidation in silicate solutions

Herein, a study of the plasma electrolytic oxidation (PEO) of niobium in an anodising bath composed of potassium silicate (K₂SiO₃) and potassium hydroxide (KOH) is reported. The effects of the K₂SiO₃ concentration in the bath and the process voltage on the characteristics of the obtained oxide layers were assessed. Compact, barrier-type oxide layers were obtained when the process voltage did not exceed the breakdown potential of the oxide layer. When this threshold was breached, the morphology of the oxide layer changed markedly, which is typical of PEO. A significant amount of silicon, in the form of amorphous silica, was incorporated into the oxide coatings under these conditions compared with the amount obtained with conventional anodising. This surface modification technique led to an improvement in the corrosion resistance of niobium in Ringer’s solution, regardless of the imposed process conditions.     

Combined Experimental and Theoretical Study on the Reactivity of Compounds I and II in Horseradish Peroxidase Biomimetics

For the exploration of the intrinsic reactivity of two key active species in the catalytic cycle of horseradish peroxidase (HRP), Compound I (HRP‐I) and Compound II (HRP‐II), we generated in situ [Fe^IV?O(TMP^+.)(2‐MeIm)]⁺ and [Fe^IV?O(TMP)(2‐MeIm)]⁰ (TMP=5,10,15,20‐tetramesitylporphyrin; 2‐MeIm=2‐methylimidazole) as biomimetics for HRP‐I and HRP‐II, respectively. Their catalytic activities in epoxidation, hydrogen abstraction, and heteroatom oxidation reactions were studied in acetonitrile at ?15 °C by utilizing rapid‐scan UV/Vis spectroscopy. Comparison of the second‐order rate constants measured for the direct reactions of the HRP‐I and HRP‐II mimics with the selected substrates clearly confirmed the outstanding oxidizing capability of the HRP‐I mimic, which is significantly higher than that of HRP‐II. The experimental study was supported by computational modeling (DFT calculations) of the oxidation mechanism of the selected substrates with the involvement of quartet and doublet HRP‐I mimics (^2,4Cpd I) and the closed‐shell triplet spin HRP‐II model (³Cpd II) as oxidizing species. The significantly lower activation barriers calculated for the oxidation systems involving ^2,4Cpd I than those found for ³Cpd II are in line with the much higher oxidizing efficiency of the HRP‐I mimic proven in the experimental part of the study. In addition, the DFT calculations show that all three reaction types catalyzed by HRP‐I occur on the doublet spin surface in an effectively concerted manner, whereas these reactions may proceed in a stepwise mechanism with the HRP‐II mimic as oxidant. However, the high desaturation or oxygen rebound barriers during C?H bond activation processes by the HRP‐II mimic predict a sufficient lifetime for the substrate radical formed through hydrogen abstraction. Thus, the theoretical calculations suggest that the dissociation of the substrate radical may be a more favorable pathway than desaturation or oxygen rebound processes. Importantly, depending on the electronic nature of the oxidizing species, that is, ^2,4Cpd I or ³Cpd II, an interesting region‐selective conversion phenomenon between sulfoxidation and H‐atom abstraction was revealed in the course of the oxidation reaction of dimethylsulfide. The combined experimental and theoretical study on the elucidation of the intrinsic reactivity patterns of the HRP‐I and HRP‐II mimics provides a valuable tool for evaluating the particular role of the HRP active species in biological systems.     

Activity disequilibrium between 234U and 238U isotopes in natural environment

The aim of this work was to calculate the values of the ²³⁴U/²³⁸U activity ratio in natural environment (water, sediments, Baltic organisms and marine birds from various regions of the southern Baltic Sea; river waters (the Vistula and the Oder River); plants and soils collected near phosphogypsum waste heap in Wi?linka (Northern Poland) and deer-like animals from Northern Poland. On the basis of the studies it was found that the most important processes of uranium geochemical migration in the southern Baltic Sea ecosystem are the sedimentation of suspended material and the vertical diffusion from the sediments into the bottom water. Considerable values of the ²³⁴U/²³⁸U are characterized for the Vistula and Oder Rivers and its tributaries. The values of the ²³⁴U/²³⁸U activity ratio in different tissues and organs of the Baltic organisms, sea birds and wild deer are varied. Such a large variation value of obtained activity ratios indicates different behavior of uranium isotopes in the tissues and organisms of sea birds and wild animals. This value shows that uranium isotopes can be disposed at a slower or faster rate. The values of the ²³⁴U/²³⁸U activity ratio in the analyzed plants, soils and mosses collected in the vicinity of phosphogypsum dumps in Wi?linka are close to one and indicate the phosphogypsum origin of the analyzed nuclides. Uranium isotopes ²³⁴U and ²³⁸U are not present in radioactive equilibrium in the aquatic environment, which indicates that their activities are not equal. The inverse relationship is observed in the terrestrial environment, where the value of the of the ²³⁴U/²³⁸U activity ratio really oscillates around unity.     

The Development and Validation of a Stability-Indicating UHPLC-DAD Method for Determination of Perindopril l-Arginine in Bulk Substance and Pharmaceutical Dosage Form

A stability-indicating ultra-high-performance liquid chromatography (UHPLC) method with a diode array detector was developed and validated for the determination of cis/trans isomers of perindopril l-arginine in bulk substance and pharmaceutical dosage form. The separation was achieved on a Poroshell 120 Hilic (4.6 × 150 mm, 2.7 µm) column using a mobile phase composed of acetonitrile–0.1 % formic acid (20:80 v/v) at a flow rate of 1 mL min⁻¹. The injection volume was 5.0 µL and the wavelength of detection was controlled at 230 nm. The selectivity of the UHPLC-DAD method was confirmed by determining perindopril l-arginine in the presence of degradation products formed during acid–base hydrolysis and oxidation as well as degradation in the solid state, at an increased relative air humidity and in dry air. The method’s linearity was investigated in the ranges 0.40–1.40 µg mL⁻¹ for isomer I and 0.40–2.40 µg mL⁻¹ for isomer II of perindopril l-arginine. The UHPLC-DAD method met the precision and accuracy criteria for the determination of the isomers of perindopril l-arginine. The limits of detection and quantitation were 0.1503 and 0.4555 µg mL⁻¹ for isomer I and 0.0356 and 0.1078 µg mL⁻¹ for isomer II, respectively.

     

Assay of Diastereoisomers of Cefuroxime Axetil in Amorphous and Crystalline Forms Using UHPLC-DAD

A sensitive UHPLC-DAD method was developed for determination of diastereoisomers of cefuroxime axetil in bulk substance in amorphous and crystalline forms as well as in pharmaceutical preparations. Chromatographic separation was achieved on Kinetex C-18 (100 mm × 2.1 mm, 1.7 µm) column with mobile phase consisting of 0.1 % formic acid:methanol (88:12, v/v), at the flow rate of 0.7 mL min⁻¹ and total run time of 3 min. The wavelength of the DAD detector was set at 278 nm. Inter-day precision (RSD) was less than 3 % and accuracy level ranged between 98.31 and 104.99 %. Degradation products of cefuroxime axetil in aqueous solutions and in the solid state were identified with a EIS-Q-MS mass spectrometer. The solubility of above-mentioned polymorphic forms of cefuroxime axetil in suitable solvents is a crucial factor during preparation of samples and is essential for chromatographic separation of its diastereoisomers.

     

The hyperspace of hereditarily decomposable subcontinua of a cube is the Hurewicz set

The hyperspaces of hereditarily decomposable continua and of decomposable subcontinua without pseudoarcs in the cube of dimension greater than 2 are homeomorphic to the Hurewicz set of all nonempty countable closed subsets of the unit interval [0,1]. Moreover, in such a cube, all indecomposable subcontinua form a homotopy dense subset of the hyperspace of (nonempty) subcontinua.     

Miniaturized tools and devices for bioanalytical applications: an overview

This article presents an overview of various miniaturized devices and technologies developed by our group. Innovative, fast and cheap procedures for the fabrication of laboratory microsystems based on commercially available materials are reported and compared with well-established microfabrication techniques. The modules fabricated and tested in our laboratory can be used independently or they can be set up in different configurations to form functional measurement systems. We also report further applications of the presented modules e.g. disposable poly(dimethylsiloxane) (PDMS) microcuvettes, fibre optic detectors, potentiometric sensors platforms, microreactors and capillary electrophoresis (CE) microchips as well as integrated microsystems e.g. double detection microanalytical systems, devices for studying enzymatic reactions and a microsystem for cell culture and lysis.     

A note on the error analysis of classical Gram–Schmidt

An error analysis result is given for classical Gram–Schmidt factorization of a full rank matrix A into A = QR where Q is left orthogonal (has orthonormal columns) and R is upper triangular. The work presented here shows that the computed R satisfies R ^T R = A ^T A + E where E is an appropriately small backward error, but only if the diagonals of R are computed in a manner similar to Cholesky factorization of the normal equations matrix. At the end of the article, implications for classical Gram–Schmidt with reorthogonalization are noted.A similar result is stated in Giraud et al. (Numer Math 101(1):87–100, 2005). However, for that result to hold, the diagonals of R must be computed in the manner recommended in this work.Jesse Barlow’s research was supported by the National Science Foundation under grant no. CCF-0429481.     

Polymer Inclusion Compounds by Polymerization of Monomers in β-Cyclodextrin Matrix in DMF Solution

The investigations of the synthesis of polyrotaxanes by the radical polymerization of monomers (vinylidene chloride, methyl acrylate, styrene, and methacrylonitrile) in DMF in the presence of β-cyclodextrin have been carried out. The possibility of formation β-cyclodextrin inclusion compounds with some vinyl monomers or some other organic substances in DMF solution has been established. We assume that the inclusion in presence of the solvent is related to the unusual phenomenon of β-cyclodextrin crystallization in hot DMF solutions. The polymerization of vinyl monomers in DMF solution at increased temperatures in the presence of β-cyclodextrin leads to compounds containing a great amount of cyclic compounds (up to 80%). Similar results have been obtained for monomers introduced as previously prepared adducts with β-cyclodextrin. Stable compounds of polymer and β-cyclodextrin have been obtained in the case of vinylidene chloride. The lack of carbohydrate moieties in the product obtained by polymerization of vinylidene chloride in the presence of linear dextrin suggest the inclusion character of the linkage between polymer and β-cyclodextrin molecules. The structure of a topological compound of polyrotaxane type is most feasible after dehydrochlorination.