Reactions of β-methoxyvinyl trifluoromethyl ketones with 2-pyridinecarboxamidrazone: A convenient route to trifluoromethylated 4,5-dihydro-1H-1-picolinoylpyrazole hydrochlorides

A new series of six 3-aryl-5-hydroxy-5-trifluoromethyl-4,5-dihydro-1H-1-picolinoylpyrazole hydrochlorides were synthesised in one-step in high yields by the reaction of β-methoxyvinyl trifluoromethyl ketones with 2-pyridinecarboxamidrazone in the presence of hydrochloric acid. The hydrochloride salts were easily converted to the respective new series of free trifluoromethylated 4,5-dihydro-1H-1-picolinoylpyrazoles using triethylamine in anhydrous diethyl ether. X-ray structure and NMR data from the pyrazole hydrochlorides are reported.     

Properties of a mixed-valence (Fe(II))2(Fe(III))2 square cell for utilization in the quantum cellular automata paradigm for molecular electronics

The di-mixed-valence complex [{(eta(5)-C5H5)Fe(eta(5)-C5H4)}4(eta(4)-C4)Co(eta(5)-C5H5)]2+, 1(2+), has been evaluated as a molecular four-dot cell for the quantum cellular automata paradigm for electronic devices. The cations 1(1+) and 1(2+) are prepared in good yield by selective chemical oxidation of 1(0) and are isolated as pure crystalline materials. The solid-state structures of 1(0) and 1(1+) and the midrange- and near-IR spectra of 1(0), 1(1+), 1(2+), and 1(3+) have been determined. Further, the variable-temperature EPR spectra of 1(1+) and 1(2+), magnetic susceptibility of 1(1+) and 1(2+), M?ssbauer spectra of 1(0), 1(1+), and 1(2+), NMR spectra of 1(0), and paramagnetic NMR spectra of 1(1+) and 1(2+) have been measured. The X-ray structure determination reveals four ferrocene "dots" arranged in a square by C-C bonds to the corners of a cyclobutadiene linker. The four ferrocene units project from alternating sides of the cyclobutadiene ring and are twisted to minimize steric interactions both with the Co(eta(5)-C5H5) fragment and with each other. In the solid state 1(2+) is a valence-trapped Robin and Day class II compound on the 10(-12) s infrared time scale, the fastest technique used herein, and unambiguous evidence for two Fe(II) and two Fe(III) sites is observed in both the infrared and M?ssbauer spectra. Both EPR and magnetic susceptibility measurements show no measurable spin-spin interaction in the solid state. In solution, the NMR spectra show that free rotation around the C-C bonds connecting the ferrocene units to the cyclobutadiene ring becomes increasingly hindered with decreasing temperature, leading to spectra at the lowest temperature that are consistent with the solid-state structure. Localization of the charges in the cations, which is observed in the paramagnetic NMR spectra as a function of temperature, correlates with the fluxional behavior. Hence, the alignment between the pi systems of the central linker and the ferrocene moieties most likely controls the rate of electron exchange between the dots.     

A molecular dynamics study on Rh3+ hydration: development and application of a first principles hydrated ion–water interaction potential

The Rh³⁺ aquaion exhibits one of the largest residence times of water molecules in the first hydration shell. The extreme stability of this hexahydrated ion in water solutions makes Rh³⁺ an extremely suitable candidate to be studied using the hydrated ion model. According to this approach, the representative cationic entity in aqueous solution is the ion plus its first hydration shell (i.e. the hydrated ion) and not the bare ion. Our group has successfully applied that concept in the framework of classical statistical simulations based on first principles ion–water interaction potentials. The methodology is now applied to the [Rh(H₂O)₆]³⁺ case based on a previous generalization in which some of the contributions were found to be transferable among the cases already studied (Cr³⁺, Al³⁺, Mg²⁺, Be²⁺). In this contribution a flexible hydrate model is presented, in which rigid first-shell water molecules have rotational and translational degrees of freedom, allowing for internal dynamics of the hydrated ion entity. The potential presented is thoroughly tested by means of a set of molecular dynamics simulations. Structural, dynamical, energetic and spectroscopic information is retrieved from the simulations, allowing the estimation of properties such as ion hydration energy, vibrational spectra of the intermolecular modes, cation mobility, rotational dynamics of the hydrated ion and first-shell water molecules and residence times of the second-shell water molecules. Extension of the Ewald sum to terms r^–4, r^–6 and r^–7 is presented and applied to systems of different size ([Rh(H₂O)₆]³⁺+(n–6)H₂O, n=50, 100, 200, 500, 1000 and 2500) and cutoff radii.Contribution to the Jacopo Tomasi Honorary Issue     

Simulating the thermal behavior and fragmentation mechanisms of exohedral and substitutional silicon-doped C60

Structures, thermal behavior, and fragmentation mechanisms of exohedral and substitutional silicon-doped C(60) containing 1-12 Si atoms are investigated by extensive molecular-dynamics simulations. A nonorthogonal tight-binding model is used to mimic the interatomic interactions in the doped fullerenes. Beginning from the minimum-energy structures, the temperature of the doped fullerenes is slowly increased until fragmentation takes place. A correlation can be established between the exohedral and substitutional structures and the corresponding fragmentation mechanisms and fragmentation temperatures. Exohedral C(60)Si(m) fullerenes fragment into two homonuclear pieces, the Si(m) cluster and the C(60) fullerene that remains intact. In contrast, the substitutional C(60-m)Si(m) heterofullerenes undergo structural transformations, including the partial unraveling of the cage, prior to fragmentation. Then, ejection of atoms or small molecules takes place from the distorted structures. The slow heating rate used, combined with long simulation runs, allows us to determine the fragmentation temperature of exohedral and substitutional Si-doped fullerenes as a function of the number of silicon atoms. Substitutional Si-doped fullerenes exhibit much higher fragmentation temperatures (1000-1500 K higher) than the exohedral fullerenes. This can be understood from the different bonding of the Si atoms in both structures.     

Electrospray ionization mass spectrometry fingerprinting of propolis

Crude ethanolic extracts of propolis, a natural resin, have been directly analysed using electrospray ionization mass (ESI-MS) and tandem mass spectrometry (ESI-MS/MS) in the negative ion mode. European, North American and African samples have been analyzed, but emphasis has been given to Brazilian propolis which displays diverse and region-dependent chemical composition. ESI-MS provides characteristic fingerprint mass spectra, with propolis samples being divided into well-defined groups directly related to their geographical origins. Chemometric multivariate analysis statistically demonstrates the reliability of the ESI-MS fingerprinting method for propolis. On-line ESI-MS/MS tandem mass spectrometry of characteristic [M - H](-) ion markers provides an additional dimension of fingerprinting selectivity, while structurally characterizing the ESI-MS marker components of propolis. By comparison with standards, eight such markers have been identified: para-coumaric acid, 3-methoxy-4-hydroxycinnamaldehyde, 2,2-dimethyl-6-carboxyethenyl-2H-1-benzopyran, 3-prenyl-4-hydroxycinnamic acid, chrysin, pinocembrin, 3,5-diprenyl-4-hydroxycinnamic acid and dicaffeoylquinic acid. The negative mode ESI-MS fingerprinting method is capable of discerning distinct composition patterns to typify, to screen the sample origin and to reveal characteristic details of the more polar and acidic chemical components of propolis samples from different regions of the world.     

Mithramycin SK,a novel antitumor drug with improved therapeutic index,mithramycin SA,and demycarosyl-mithramycin SK: three new products generated in the mithramycin producer Streptomyces argillaceus through combinatorial biosynthesis

To gain initial structure-activity relationships regarding the highly functionalized pentyl side chain attached at C-3 of mithramycin (MTM), we focused on a post-polyketide synthase (post-PKS) tailoring step of the MTM biosynthesis by Streptomyces argillaceus ATCC 12956, which was proposed to be catalyzed by ketoreductase (KR) MtmW. In this last step of the MTM biosynthesis, a keto group of the pentyl side chain is reduced to a secondary alcohol, and we anticipated the generation of an MTM derivative with an additional keto group in the 3-side chain. Insertional inactivation of mtmW, a gene located ca. 8 kb downstream of the mithramycin-PKS genes, yielded an S. argillaceus mutant, which accumulated three new mithramycin analogues, namely mithramycin SA, demycarosyl-mithramycin SK, and mithramycin SK (MTM-SK). The structures of these three compounds confirmed indirectly the proposed role of MtmW in MTM biosynthesis. However, the new mithramycin derivatives bear unexpectedly shorter 3-side chains (ethyl or butyl) than MTM, presumably caused by nonenzymatic rearrangement or cleavage reactions of the initially formed pentyl side chain with a reactive beta-dicarbonyl functional group. The major product, MTM-SK, was tested in vitro against a variety of human cancer cell lines, as well as in an in vitro toxicity assay, and showed an improved therapeutic index, in comparison to the parent drug, MTM.     

Electrospray mass and tandem mass spectrometry identification of ozone oxidation products of amino acids and small peptides

Aqueous ozonation of the 22 most common amino acids and some small peptides were studied by electrospray mass (ESI-MS) and tandem mass spectrometry. After 5 min of ozonation only His, Met, Trp, and Tyr form oxidation products clearly detectable by ESI-MS. For His, the main oxidation product is formed by the addition of three oxygen atoms, His + 30; for Met and Tyr by the addition of one oxygen atom, Met + O and Tyr + O, and for Trp by the addition of two oxygen atoms, Trp + 20. Ozone oxidation occurs rapidly, products are already detected after 30 s of ozonation, and the reactivity order is Met > Trp > Tyr > His. The structures of the oxygen addition products were investigated by electrospray product ion mass spectra, and by comparing these spectra to those of protonated intact amino acids, and when available, to those of model compounds. His + 30 was assigned as 2-amino-4-oxo-4-(3-formylureido)butanoic acid (1) formed by oxidation of the His imidazole ring, Met + O as methionine sulfoxide (2), Trp + 20 as N-formylkynurenine (4), and Tyr + O as a mixture of dihydroxyphenylalanines (7 and 8). Ozonation of peptides show that the same number of oxygen atoms are added as expected from the ozonation of the free amino acids. The product ion mass spectra of both the protonated intact peptides, MH+, and the main ozonation products (M + nO)H+ (n = 1-3) revealed b and y type ions as the main fragments, which allow one to assign the type and location of modified amino acid in the model peptides.     

Gas phase chemistry of the 2-tert-butyl-3-phenylphosphirenylium cation: novel onium ions by nucleophilic attack at phosphorus and de novo P-spiro bicyclic phosphonium ions via [4 + 2+] cycloaddition with dienes

The 2-tert-butyl-3-phenylphosphirenylium ion 13 is formed in abundance in the gas phase from 1-chloro-1H-phosphirene 6 upon 70 eV electron ionization. Collision-induced dissociation (CID) and ion-molecule reactions followed by CID of the product ions were performed via pentaquadrupole mass spectrometry to probe the structure and reactivity of 13 towards representative nucleophiles and dienes. Under CID conditions, 13 produces a variety of fragment ions mainly via dissociation processes that are preceded by isomerizations. In ion-molecule reactions, 13 reacts readily with ethers, sulfides, pyridine and aniline to form hitherto unknown oxonium, sulfonium and azonium ions via nucleophilic attack at phosphorus. With butadiene, isoprene, 1-acetoxybutadiene, and with Danishefsky's diene (1-methoxy-3-silyloxybuta-1,3-diene), 13 undergoes [4 + 2+] cycloaddition at phosphorus to generate novel P-spiro bicyclic phosphonium ions. With butadiene and isoprene, a second [4 + 2] cycloaddition occurs which generates P-spiro tricyclic phosphonium ions. Whereas 13 also reacts readily with 1-acetoxybutadiene via[4 + 2+] cycloaddition, most of the nascent P-spiro cycloadducts are unstable and dissociate by the loss of either a neutral ketene or acetic acid molecule. B3LYP/6-31G(d,p) calculations were performed to gain insight into the structures of the product ions. The present study constitutes the first successful attempt to unravel the chemistry of 13, a unique 2 pi-Hückel phosphirenylium ion for which no direct solution chemical reactivity data are as yet available. The present findings also create a parallel with the solution reactivity of 1-halo-1H-phosphirenes and 1-triflato-1H-phosphirenes as precursors to phosphirenylium ions.     

Synthesis and Structural Studies of 4-Thioxopyrimidines with Antimicrobial Activities

Summary. This work describes a two-step, one-pot synthetic method for the formal aza-[3 + 3] cycloaddition between N-alkyl substituted enaminones and benzoyl isothiocyanate, which afforded 4-thioxopyrimidines in reasonable yields. Reaction of acyclic enaminone with a sterically hindered group attached to the nitrogen atom afforded pyridine-2-thione, yet in low yield. The antibacterial, antifungal, and trypanocidal activities of the thioxopyrimidines were evaluated and five compounds exhibited moderate activity against Candida albicans, Micrococcus luteus, and Trypanosoma cruzi. The solid state structures of a thioxopyrimidine, an organic disulfide, and a 1,2,4-triazole were determined by X-ray diffraction analysis.     

Sensor film for Vitamin C determination based on absorption properties of polyaniline

An analytical method based on the absorption changes of chemically polymerised polyaniline at 700 nm is proposed for the determination of Vitamin C. Vitamin C produces a polyaniline film reduction, originating changes in its absorbance proportional to the Vitamin C concentration. The optimum reaction conditions and the analytical characteristics have been studied. The linear response of the method ranged from 0.10 to 1.0 mg l⁻¹ for a 6 min reaction time and from 1.0 to 8.0 mg l⁻¹ for a 2 min reaction time. Reproducibility, expressed as the coefficient of variation, was 0.8% (6 min reaction time) and 2.3% (2 min reaction time) (n = 10). The method has been applied to Vitamin C determination in pharmaceutical preparations and commercial fruit juices. The results were compared with those obtained by the 2,6-dichlorophenolindophenol titration method (the AOAC Official Method) and no systematic errors were observed.