Analytical perfect fluid perturbation for the matter dominated epoch

We present the analytical solution to the linear evolution equation of a one component Friedmann perturbation using an equation of state of the form p = (1/3)μσ²(t), where μ is the mass density and σ(t) is the root mean square (rms) velocity in the matter dominated epoch. It is assumed that this rms velocity depends only on the time coordinate and decreases as 1/a, a being the expansion factor of the Friedmann background. The evolution equations are written for scales below the horizon using the longitudinal gauge. The general solution, in the coordinate space, of the evolution equation for the scalar mode is obtained. In the case of spherical symmetry, this solution is expressed in terms of unidimensional integrals of the initial conditions: the initial values of the Newtonian potential and its first time derivative. This perfect fluid solution is a good approximation to the evolution of warm dark matter perturbations obtained by solving the Vlasov’s equation for collisionless particles.     

On low order moments of the homodyned-K distribution

Fractional low order moments have been reported as beneficial for sampling computations using the K distribution. However, it has been recently pointed out that this it not the case for the homodyned-K distribution for a tissue discrimination problem. In this paper we show that such an statement is not fully justified. To that end, we follow a standard pattern recognition procedure both to determine class separability measures and to classify data with several classifiers. We conclude that the optimum order of the moments is intimately linked to the specific statistical properties of the tissues to be discriminated. Some ideas on how to choose the optimum order are discussed.     

The effect of rate of stimulation on perception of spectral shape by cochlear implantees

The effect of rate of stimulation on spectral shape perception was measured in six users of the Nucleus CI24 cochlear implant. Three spectral shapes were created by using three profiles of current across seven electrode positions. Each current profile was replicated in three stimuli that interleaved stimulus pulses across the seven electrodes with cycle rates (rate per electrode) of 450, 900, and 1800 Hz. The stimulus space resulting from a multidimensional scaling experiment showed a clear dimension related to the rate of stimulation that was orthogonal to the dimension related to the spectral shapes. A second experiment was performed with the same subjects to investigate whether the perceptual dimension related to rate in Experiment 1 could be attributed to different perceptual flatness of the profiles at different rates. In Experiment 2, the rate of stimulation was fixed at 900 Hz and three profiles were created for each spectral shape that differed in flatness. This experiment did not, however, result in an independent perceptual dimension related to the flatness of the profile. In conclusion, rate of stimulation provided an independent perceptual dimension in the multiple-electrode stimuli, in spite of the rates being not discriminable or barely discriminable in single-electrode stimulation.     

Quantitative measurement of different ceramide species from crude cellular extracts by normal-phase high-performance liquid chromatography coupled to atmospheric pressure ionization mass spectrometry

Normal-phase high-performance liquid chromatography (NP-HPLC) coupled to atmospheric pressure ionization mass spectrometry (APCI-MS) allows quantitative analysis of endogenous ceramide and dihydroceramide species from crude lipid extracts. Qualitative information for the species comes from observation of differences in chromatographic and mass spectrometric behavior between species (Pettus et al. Rapid Commun. Mass Spectrom. 2003; 17: 1017-1026). Quantitative analysis is achieved by (1) use of a synthetic internal standard as an extraction and injection control, (2) lack of salt adduction, ion suppression, or other matrix effects in APCI mode, and (3) consistent fragmentation and ionization of external standards across the physiologically relevant concentration range found in endogenous lipid samples. Application to the analysis and quantitation of ceramide and dihydroceramide from various cell lines is demonstrated. The results from APCI-MS analysis corroborate and enhance information acquired from use of the diacylglycerol kinase assay for total ceramide measurement. This technique readily allows simultaneous quantitation of ceramide and dihydroceramide species.     

Defining the antigenic structure of human GM-CSF and its implications for receptor interaction and therapeutic treatments

Three epitopes of human Granulocyte-Macrophage Colony-Stimulating Factor (hGM-CSF) recognised by neutralising and non-neutralising monoclonal antibodies (mAbs) were characterised using competitive binding assays, dissociation constant measurements with glycosylated and non-glycosylated rhGM-CSF, bioactivity inhibition studies, and synthetic peptide arrays. Based on the first approach, two different binding sites were identified: an area referred to as A, recognised by mAbs M1B8 and CC5B5, and an area referred to as B, recognised by mAbs CC1H7 and CC3C12. These binding sites on hGM-CSF were accurately delineated using cytokine-derived overlapping peptide scans and combinatorial hexapeptide libraries prepared by SPOT synthesis on cellulose membranes. We assigned the identical linear epitope A₁P₂A₃R₄ to both non-neutralising mAbs CC1H7 and CC3C12. The conformational epitopes A₁₈E₂₁R₂₃R₂₄F₁₁₉ and R₂₃E₂₁N₁₇W₁₃ recognised by mAb CC5B5, and P₁₁₈F₁₁₉EW₁₃E₁₄ recognised by mAb M1B8, were delineated by dual-positional scanning and subsequent iterative searches with two interrogating positions. Competitive binding assays with mAbs M1B8 and CC5B5 revealed the overlapping nature of the cytokine recognition. However, peptide library screening confirmed their binding to different epitopes of which the essential amino acids were found very closely located on the native protein surface. Inhibition of hGM-CSF biological activity by these mAbs demonstrated that these epitopes are located within or very near the receptor binding site of hGM-CSF. Finally, this work supports the importance of residues from helix A and residues from the C-terminal region of the cytokine, composing a common area that is indispensable for the cytokine's biological activity.     

Study of the stabilization energies of halide-water clusters: an application of first-principles interaction potentials based on a polarizable and flexible model

The aim of this work is to compute the stabilization energy E(stab)(n) of [X(H(2)O)(n)](-) (X identical with F, Br, and I for n=1-60) clusters from Monte Carlo simulations using first-principles ab initio potentials. Stabilization energy of [X(H(2)O)(n)](-) clusters is defined as the difference between the vertical photodeachment energy of the cluster and the electron affinity of the isolated halide. On one hand, a study about the relation between cluster structure and the E(stab)(n) value, as well as the dependence of the latter with temperature is performed, on the other hand, a test on the reliability of our recently developed first-principles halide ion-water interaction potentials is carried out. Two different approximations were applied: (1) the Koopmans' theorem and (2) calculation of the difference between the interaction energy of [X(H(2)O)(n)](-) and [X(H(2)O)(n)] clusters using the same ab initio interaction potentials. The developed methodology allows for using the same interaction potentials in the case of the ionic and neutral clusters with the proviso that the charge of the halide anion was switched off in the latter. That is, no specific parametrization of the interaction potentials to fit the magnitude under study was done. The good agreement between our predicted E(stab)(n) and experimental data allows us to validate the first-principles interaction potentials developed elsewhere and used in this study, and supports the fact that this magnitude is mainly determined by electrostatic factors, which can be described by our interaction potentials. No relation between the value of E(stab)(n) and the structure of clusters has been found. The diversity of E(stab)(n) values found for different clusters with similar interaction energy indicates the need for statistical information to properly estimate the stabilization energy of the halide anions. The effect of temperature in the prediction of the E(stab)(n) is not significant as long as it was high enough to avoid cluster trapping into local equilibrium configurations which guarantees an appropriate sampling of the configurational space. Parallel tempering method was applied in particular cases to guarantee satisfactory sampling of clusters at low temperature.