An improved SPE method for fractionation and identification of phospholipids

This work reports an efficient and universal SPE method developed for separation and identification of phospholipids derived from complex biological samples. For the separation step, sequential combination of silica gel‐aminopropyl‐silica gel SPE cartridges is applied. This setup enables separation of phosphatidylcholine, lysophosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, phosphatidic acid, phosphatidylinositol, phosphatidylserine, cardiolipin, and sphingomyelin into four fractions according to the polarity of their headgroups. Sample acquisition of the SPE fractions is performed by a high‐resolution LC‐MS system consisting of a hybrid linear IT Fourier transform ion cyclotron resonance mass spectrometer coupled to RP‐HPLC. The unequivocal advantage of our SPE sample preparation setup is avoidance of analyte peak overlapping in the determination step done by RP‐HPLC. Overlapping phospholipid signals would otherwise exert adverse ion suppression effects. An additional benefit of this method is the elimination of polar and nonpolar (e.g. neutral lipids) contaminants from the phospholipid fractions, which highly reduces contamination of the LC‐MS system. The method was validated with fermentation samples of organic waste, where 78 distinct phospholipid and sphingomyelin species belonging to six lipid classes were successfully identified.     

Some considerations of the kinetics of the acid hydrolysis of poly- and oligosaccharides. Part III. The disaccharides 2-O-(α-D-glucopyranosyluronic acid)-D-xylose, 2-O-(4-O-methyl-α-D-glucopyrano-syluronic acid)-D-xylose,and 2-O-(4-O-methyl-α-D-glucopyranosyl)-D-xylitol

Rate equations have been formulated for the formation and depletion of the hydrolysis product(s) of the title disaccharides. They are based on the assumptions that (1) the rate of acid hydrolysis of the disaccharides is according to first order, and (2) the rate of depletion of the hydrolysis product(s) is constant in the early periods while it approaches first order in the more advanced stages of the reactions. By using experimental rate data from the literature the rate constants of the hydrolysis of the disaccharides and of the depletion of the hydrolysis product(s) have been computed. The validity of the assumptions underlying the rate equations advanced has been confirmed by (a) the agreement between experimental and calculated values and (b) the similar values for the rate constant of the depletion of xylose formed in the hydrolysis of the two biouronic acids. Also discussed are some implications arising from the magnitude of the hydrolysis rate constant of methylaldobiouronic acid and of the depletion rate constant of xylose in relation to complete hydrolysis of polysaccharides.     

Transfer Hydrogenation of Ketones Catalyzed by Surface‐Active Ruthenium and Rhodium Complexes in Water

An improved, high‐yield, one‐pot synthetic procedure for water‐soluble ligands functionalized with trialkyl ammonium side groups H₂N(CH₂)₂NHSO₂‐p‐C₆H₄CH₂[NMe₂(C_nH_2n+1)]⁺ ( [HL ⁿ ]⁺ ; n=8, 16) was developed. The corresponding new surface‐active complexes [(p‐cymene)RuCl( L ⁿ )] and [Cp*RhCl( L ⁿ )] (Cp*=η⁵‐C₅Me₅) were prepared and characterized. For n=16 micelles are formed in water at concentrations as low as 0.6 mM , as demonstrated by surface‐tension measurements. The complexes were used for catalytic transfer hydrogenation of ketones with formate in water. Highly active catalyst systems were obtained in the case of complexes bearing C₁₆ tails due to their ability to be adsorbed at the water/substrate interface. The scope of these catalyst systems in aqueous solutions was extended from partially water soluble aryl alkyl ketones (acetophenone, butyrophenone) to hydrophobic dialkyl ketones (2‐dodecanone).     

Tailoring the Structure of Two‐Dimensional Self‐Assembled Nanoarchitectures Based on NiII–Salen Building Blocks

The synthesis of a series of Ni^II–salen‐based complexes with the general formula of [Ni(H₂L)] (H₄L=R²‐N,N′‐bis[R¹‐5‐(4′‐benzoic acid)salicylidene]; H₄L1: R²=2,3‐diamino‐2,3‐dimethylbutane and R¹=H; H₄L2: R²=1,2‐diaminoethane and R¹=tert‐butyl and H₄L3: R²=1,2‐diaminobenzene and R¹=tert‐butyl) is presented. Their electronic structure and self‐assembly was studied. The organic ligands of the salen complexes are functionalized with peripheral carboxylic groups for driving molecular self‐assembly through hydrogen bonding. In addition, other substituents, that is, tert‐butyl and diamine bridges (2,3‐diamino‐2,3‐dimethylbutane, 1,2‐diaminobenzene or 1,2‐diaminoethane), were used to tune the two‐dimensional (2D) packing of these building blocks. Density functional theory (DFT) calculations reveal that the spatial distribution of the LUMOs is affected by these substituents, in contrast with the HOMOs, which remain unchanged. Scanning tunneling microscopy (STM) shows that the three complexes self‐assemble into three different 2D nanoarchitectures at the solid–liquid interface on graphite. Two structures are porous and one is close‐packed. These structures are stabilized by hydrogen bonds in one dimension, while the 2D interaction is governed by van der Waals forces and is tuned by the nature of the substituents, as confirmed by theoretical calculations. As expected, the total dipolar moment is minimized     

On euclidean domains

We consider Euclidean domains and their groups of units. Let K(a,b) be the set of remainders in the division of a by b. If Card K(a,b) = 1 for any a and b from a Euclidean domain R, then R is known to be isomorphic to the ring of polynomials over some field, see [4], [5]. On the other hand, the condition Card K(a,b) = 2 for any a and b implies that R is isomorphic to the ring Z of integers, see [2]. We give characterization of Euclidean domains and their groups of units under some other conditions on K(a,b).     

Open tube combustion method of organic samples for stable carbon isotope analysis

A simple and effective method for the conversion of organic carbon into carbon dioxide for analysis of stable carbon isotopes (delta(13)C) in samples of various organic substances, soils, sedimentary rocks, oils and volatile organic liquids is presented. The conversion of organic carbon of the samples is carried out in a quartz reactor connected to a vacuum line for CO(2) freezing and purification. A solid organic sample mixed with CuO is placed at the reactor bottom and the reactor is subsequently filled with granular CuO. One end of the CuO column is preheated to 850 degrees C while the other end of the column in contact with the sample is kept at ambient temperature. Heating of the sample (850 degrees C) and the remainder of the column is then performed. The preheated part of the column provides efficient conversion of carbon into CO(2). The reactor for the conversion of volatile liquid organic compounds is filled with granular CuO. The column of CuO is heated to 850 degrees C. Samples of volatile liquids are introduced into the reactor through a septum using a microsyringe. Complete conversion takes 10 min for solid samples and 3 min for volatile liquids. The precision of the delta(13)C analysis for solid and volatile liquid organic substances is +/-0.1 per thousand and +/-0.04 per thousand, respectively.     

Solvating,manipulating, damaging,and repairing DNA in a computer

This work highlights four different topics in modeling of DNA: (i) the importance of water and ions together with the structure and function of DNA; the hydration structure around the ions appears to be the determining factor in the ion coordination to DNA, as demonstrated in the results of our MD simulations; (ii) how MD simulations can be used to simulate single molecule manipulation experiments as a complement to reveal the structural dynamics of the studied biomolecules; (iii) how damaged DNA can be studied in computer simulations; and (iv) how repair of damaged DNA can be studied theoretically. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

A new method of synthesis of substituted 1-(1H-imidazole-4-yl)-1H-1,2,3-triazoles and their fungicidal activity

Based on the deoxygenation reaction of 1-(1-tert-butyl-3-nitroazetidine-3-yl)-1H-1,2,3-triazoles a new method for the synthesis of substituted 1-(1H-imidazole-4-yl)-1H-1,2,3-triazoles has been developed. Fungicidal activity of these compounds has been investigated at a range of phytopathogenic fungi.