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排序方式: 共有251条查询结果,搜索用时 78 毫秒
41.
Yvonne Hari Branislav Dugovič Alena Istrate Annabel Fignolé Christian J. Leumann Stefan Schürch 《Journal of the American Society for Mass Spectrometry》2016,27(7):1186-1196
Tricyclo-DNA (tcDNA) is a sugar-modified analogue of DNA currently tested for the treatment of Duchenne muscular dystrophy in an antisense approach. Tandem mass spectrometry plays a key role in modern medical diagnostics and has become a widespread technique for the structure elucidation and quantification of antisense oligonucleotides. Herein, mechanistic aspects of the fragmentation of tcDNA are discussed, which lay the basis for reliable sequencing and quantification of the antisense oligonucleotide. Excellent selectivity of tcDNA for complementary RNA is demonstrated in direct competition experiments. Moreover, the kinetic stability and fragmentation pattern of matched and mismatched tcDNA heteroduplexes were investigated and compared with non-modified DNA and RNA duplexes. Although the separation of the constituting strands is the entropy-favored fragmentation pathway of all nucleic acid duplexes, it was found to be only a minor pathway of tcDNA duplexes. The modified hybrid duplexes preferentially undergo neutral base loss and backbone cleavage. This difference is due to the low activation entropy for the strand dissociation of modified duplexes that arises from the conformational constraint of the tc-sugar-moiety. The low activation entropy results in a relatively high free activation enthalpy for the dissociation comparable to the free activation enthalpy of the alternative reaction pathway, the release of a nucleobase. The gas-phase behavior of tcDNA duplexes illustrates the impact of the activation entropy on the fragmentation kinetics and suggests that tandem mass spectrometric experiments are not suited to determine the relative stability of different types of nucleic acid duplexes. 相似文献
42.
The features of rock-forming elements determination in powder samples of peat sediments are considered. Based on theoretical calculations and experimental data, the mineralogical and particle size effects on the X-ray fluorescence intensity have been estimated. For routine analysis, powder rock samples are usually milled to a particle size of 10–60 μm. Theoretically, estimated variations of rock-forming elements analytical lines intensities in different minerals are up to 30%, and the particle size effect cannot be eliminated simultaneously for all rock-forming elements. Experimental estimation shows that the impossibility of the particle size distribution control can lead to significant variations in the intensities of the analytical lines (3%–18%) that is mainly corresponding to theoretical estimation. Fine milling allowed us to achieve an average particle size of fewer than 20 μm and reduce the measurement uncertainty by 1.5–2 times. 12 samples of peat sediments with organic matter content up to 70 wt% were analyzed by X-ray fluorescence analysis using different sample preparation techniques, as well as by certified methods. The accuracy of X-ray fluorescence analysis of peat sediments prepared as pressed pellets varies from 1.5 to 11 rel% depending on compound contents. It is more than for samples prepared as fused beads, however, the proposed method can be used to determine the variations of rock-forming elements contents in peat sediments where the content variations exceed the measurement uncertainty, and accuracy of analysis is sufficient for further paleoecological reconstructions. 相似文献
43.
M Pérez M Fañanás-Mastral V Hornillos A Rudolph PH Bos SR Harutyunyan BL Feringa 《Chemistry (Weinheim an der Bergstrasse, Germany)》2012,18(38):11880-11883
A highly efficient, regio- and enantioselective Cu(I) /phosphoramidite-catalyzed asymmetric allylic alkylation of allyl ethers with organolithium reagents is reported. The use of organolithium reagents is essential for this catalytic C?C bond formation due to their compatibility with different Lewis acids. The versatility of allylic ethers under the copper-catalyzed reaction conditions with organolithium reagents is demonstrated in the shortest synthesis of (S)-Arundic acid. 相似文献
44.
Karolína Salvadori Alena Krupkov Lucie ervenkov astn Monika Müllerov Vclav Eigner Tom Strak Petra Cuínov 《Molecules (Basel, Switzerland)》2021,26(18)
The repetition of urea-based binding units within the receptor structure does not only lead to monomer properties multiplication. As confirmed by spectroscopic studies, UV-Vis and 1H-NMR in classical or competitive titration mode, the attachment to a carrier allocates the active moieties to mutual positions predetermining the function of the whole receptor molecule. Bivalent receptors form self-aggregates. Dendritic receptors with low dihydrogen phosphate loadings offer a cooperative complexation mode associated with a positive dendritic effect. In higher dihydrogen phosphate concentrations, the dendritic branches act independently and the binding mode changes to 1:1 anion: complexation site. Despite the anchoring, the dendritic receptors retain the superior efficiency and selectivity of a monomer, paving the way to recyclable receptors, desirable for economic and ecological reasons. 相似文献
45.
Alena L. Stalinskaya Nadezhda V. Martynenko Zarina T. Shulgau Alexandr V. Shustov Viktoriya V. Keyer Ivan V. Kulakov 《Molecules (Basel, Switzerland)》2022,27(12)
The COVID-19 pandemic is ongoing as of mid-2022 and requires the development of new therapeutic drugs, because the existing clinically approved drugs are limited. In this work, seven derivatives of epoxybenzooxocinopyridine were synthesized and tested for the ability to inhibit the replication of the SARS-CoV-2 virus in cell cultures. Among the described compounds, six were not able to suppress the SARS-CoV-2 virus’ replication. One compound, which is a derivative of epoxybenzooxocinopyridine with an attached side group of 3,4-dihydroquinoxalin-2-one, demonstrated antiviral activity comparable to that of one pharmaceutical drug. The described compound is a prospective lead substance, because the half-maximal effective concentration is 2.23 μg/μL, which is within a pharmacologically achievable range. 相似文献
46.
Johannes Krebs Alena Hfner Sonja Fuchs Xueying Guo Florian Rauch Antonius Eichhorn Ivo Krummenacher Alexandra Friedrich Lei Ji Maik Finze Zhenyang Lin Holger Braunschweig Todd B. Marder 《Chemical science》2022,13(47):14165
The choice of backbone linker for two ortho-bis-(9-borafluorene)s has a great influence on the LUMO located at the boron centers and, therefore, the reactivity of the respective compounds. Herein, we report the room temperature rearrangement of 1,2-bis-(9-borafluorenyl)-ortho-carborane, C2B10H10-1,2-[B(C12H8)]2 ([2a]) featuring o-carborane as the inorganic three-dimensional backbone and the synthesis of 1,2-bis-(9-borafluorenyl)benzene, C6H4-1,2-[B(C12H8)]2 (2b), its phenylene analog. DFT calculations on the transition state for the rearrangement support an intramolecular C–H bond activation process via an SEAr-like mechanism in [2a], and predicted that the same rearrangement would take place in 2b, but at elevated temperatures, which indeed proved to be the case. The rearrangement gives access to 3a and 3b as dibora-benzo[a]fluoroanthene isomers, a form of diboron polycyclic aromatic hydrocarbon (PAH) that had yet to be explored. The isolated compounds 2b, 3a, and 3b were fully characterized by NMR, HRMS, cyclic voltammetry (CV), single-crystal X-ray diffraction analysis, and photophysical measurements, supported by DFT and TD-DFT calculations.The backbone linker for two ortho-bis-(9-borafluorene)s influences the LUMO at the boron centers and the reactivity of the respective compounds. 相似文献
47.
Václav Čuba Tereza Pavelková Jan Bárta Tomáš Gbur Martin Vlk Alena Zavadilová Jakub Indrei Zuzana Dočekalová Milan Pospíšil Viliam Múčka 《Radiation Physics and Chemistry》2012,81(9):1411-1416
Results on preparation of nickel, zinc, yttrium, aluminum and cobalt oxides, zinc peroxide and hydroxide, yttrium and lutetium aluminum garnets and cobalt(II) aluminate via irradiation of aqueous solutions containing soluble metal salts and radical scavengers (formate anion or propan-2-ol) are summarized in this paper. Various physico-chemical and structural properties of prepared compounds (e.g. crystallinity, specific surface area, particle size) are also reported.All used variants of radiation method are rather convenient and simple, and yield nano-scale powder materials with interesting characteristics. Prepared materials generally have high chemical purity, high specific surface area and narrow distribution of particle size (ranging in tens of nm).Generally, accelerated electrons, gamma, and UV radiation yield materials with comparable properties and structural characteristics, but UV-radiation seems to be the most convenient for preparation of intricate compounds such as synthetic garnets and spinels, while ionizing radiation is better for preparation of compounds doped with foreign ions.Among discussed compounds, only zinc oxide, peroxide and hydroxide were prepared directly via irradiation. For preparation of other crystalline oxidic compounds, mild heat treatment of amorphous or weakly crystalline solid phase was necessary. 相似文献
48.
Enrique Gil de Montes Dr. Alena Istrate Dr. Claudio D. Navo Dr. Ester Jiménez-Moreno Emily A. Hoyt Dr. Francisco Corzana Prof. Inmaculada Robina Dr. Gonzalo Jiménez-Osés Dr. Antonio J. Moreno-Vargas Dr. Gonçalo J. L. Bernardes 《Angewandte Chemie (Weinheim an der Bergstrasse, Germany)》2020,132(15):6255-6259
An azanorbornadiene bromovinyl sulfone reagent for cysteine-selective bioconjugation has been developed. Subsequent reaction with dipyridyl tetrazine leads to bond cleavage and formation of a pyrrole-linked conjugate. The latter involves ligation of the tetrazine to the azanorbornadiene-tagged protein through inverse electron demand Diels–Alder cycloaddition with subsequent double retro-Diels–Alder reactions to form a stable pyrrole linkage. The sequence of site-selective bioconjugation followed by bioorthogonal bond cleavage was efficiently employed for the labelling of three different proteins. This method benefits from easy preparation of these reagents, selectivity for cysteine, and stability after reaction with a commercial tetrazine, which has potential for the routine preparation of protein conjugates for chemical biology studies. 相似文献
49.
Alena Šišková Eva Macová Danilo Corradini Dušan Berek 《Journal of separation science》2013,36(18):2979-2985
Reduced sample recovery is a frequent feature of LC of macromolecules under critical conditions of enthalpic interactions (LC CC). Several methods of assessment of LC CC sample recovery are compared. A novel approach is based on an online combination of the. The LC CC column with a noninteractive SEC column. It provides not only the amount but also the molar mass of the eluted/withheld polymer. The procedure was tested with poly(methyl methacrylate), bare silica gel column packings, and “critical eluent” tetrahydrofuran/toluene. It was shown that macromolecules with higher molar masses were preferentially trapped within the LC CC column packing so that the eluted part of the sample was no longer representative. The incomplete polymer elution can make the LC CC polymer analyses susceptible to significant experimental errors. 相似文献
50.
Carina Lemke Dr. Adéla Jílková Dominic Ferber Dr. Annett Braune Anja On Dr. Patrick Johe Dr. Alena Zíková Prof. Dr. Tanja Schirmeister Dr. Michael Mareš Dr. Martin Horn Prof. Dr. Michael Gütschow 《Chemistry (Weinheim an der Bergstrasse, Germany)》2022,28(62):e202201636
Rhodesain is the major cysteine protease of the protozoan parasite Trypanosoma brucei and a therapeutic target for sleeping sickness, a fatal neglected tropical disease. We designed, synthesized and characterized a bimodal activity-based probe that binds to and inactivates rhodesain. This probe exhibited an irreversible mode of action and extraordinary potency for the target protease with a kinac/Ki value of 37,000 M−1s−1. Two reporter tags, a fluorescent coumarin moiety and a biotin affinity label, were incorporated into the probe and enabled highly sensitive detection of rhodesain in a complex proteome by in-gel fluorescence and on-blot chemiluminescence. Furthermore, the probe was employed for microseparation and quantification of rhodesain and for inhibitor screening using a competition assay. The developed bimodal rhodesain probe represents a new proteomic tool for studying Trypanosoma pathobiochemistry and antitrypanosomal drug discovery. 相似文献