Refractive Index of Liquid Mixtures: Theory and Experiment

An innovative approach is presented to interpret the refractive index of binary liquid mixtures. The concept of refractive index “before mixing” is introduced and shown to be given by the volume‐fraction mixing rule of the pure‐component refractive indices (Arago–Biot formula). The refractive index of thermodynamically ideal liquid mixtures is demonstrated to be given by the volume‐fraction mixing rule of the pure‐component squared refractive indices (Newton formula). This theoretical formulation entails a positive change of refractive index upon ideal mixing, which is interpreted in terms of dissimilar London dispersion forces centred in the dissimilar molecules making up the mixture. For real liquid mixtures, the refractive index of mixing and the excess refractive index are introduced in a thermodynamic manner. Examples of mixtures are cited for which excess refractive indices and excess molar volumes show all of the four possible sign combinations, a fact that jeopardises the finding of a general equation linking these two excess properties. Refractive indices of 69 mixtures of water with the amphiphile (R,S)‐1‐propoxypropan‐2‐ol are reported at five temperatures in the range 283–303 K. The ideal and real refractive properties of this binary system are discussed. Pear‐shaped plots of excess refractive indices against excess molar volumes show that extreme positive values of excess refractive index occur at a substantially lower mole fraction of the amphiphile than extreme negative values of excess molar volume. Analysis of these plots provides insights into the mixing schemes that occur in different composition segments. A nearly linear variation is found when Balankina’s ratios between excess and ideal values of refractive indices are plotted against ratios between excess and ideal values of molar volumes. It is concluded that, when coupled with volumetric properties, the new thermodynamic functions defined for the analysis of refractive indices of liquid mixtures give important complementary information on the mixing process over the whole composition range.     

Understanding the DNA binding of novel non-symmetrical guanidinium/2-aminoimidazolinium derivatives

Biophysical studies have been carried out on a family of asymmetric guanidinium-based diaromatic derivatives to assess their potential as DNA minor groove binding agents. To experimentally assess the binding of these compounds to DNA, solution phase biophysical studies have been performed. Thus, surface plasmon resonance, UV-visible spectroscopy and circular and linear dichroism have been utilized to evaluate binding constants, stoichiometry and mode of binding. In addition, the thermodynamics of the binding process have been determined by using isothermal titration calorimetry. These results show significant DNA binding affinity that correlates with the expected 1?:?1 binding ratio usually observed for minor groove binders. Moreover, a simple computational approach has been devised to assess the potential as DNA binders of this family of compounds.     

Randomization of Amyloid‐β‐Peptide(1‐42) Conformation by Sulfonated and Sulfated Nanoparticles Reduces Aggregation and Cytotoxicity

The amyloid‐β peptide (Aβ) plays a central role in the mechanism of Alzheimer's disease, being the main constituent of the plaque deposits found in AD brains. Aβ amyloid formation and deposition are due to a conformational switching to a β‐enriched secondary structure. Our strategy to inhibit Aβ aggregation involves the re‐conversion of Aβ conformation by adsorption to nanoparticles. NPs were synthesized by sulfonation and sulfation of polystyrene, leading to microgels and latexes. Both polymeric nanostructures affect the conformation of Aβ inducing an unordered state. Oligomerization was delayed and cytotoxicity reduced. The proper balance between hydrophilic moieties and hydrophobic chains seems to be an essential feature of effective NPs.

     

Exploiting run time distributions to compare sequential and parallel stochastic local search algorithms

Run time distributions or time-to-target plots are very useful tools to characterize the running times of stochastic algorithms for combinatorial optimization. We further explore run time distributions and describe a new tool to compare two algorithms based on stochastic local search. For the case where the running times of both algorithms fit exponential distributions, we derive a closed form index that gives the probability that one of them finds a solution at least as good as a given target value in a smaller computation time than the other. This result is extended to the case of general run time distributions and a numerical iterative procedure is described for the computation of the above probability value. Numerical examples illustrate the application of this tool in the comparison of different sequential and parallel algorithms for a number of distinct problems.     

Weighted bilinear Hardy inequalities

We characterize the weights w, $w_1$, $w_2$ such that the weighted bilinear Hardy inequality$\left(\underset{a}{\overset{b}{\int }}\right(\underset{a}{\overset{x}{\int }}f{)}^q(\underset{a}{\overset{x}{\int }}g{)}^{q}w(x)dx{)}^{\frac{1}{q}}?C(\underset{a}{\overset{b}{\int }}{f}^{p_1}{w}_1{)}^{\frac{1}{p_1}}(\underset{a}{\overset{b}{\int }}{g}^{p_2}{w}_2{)}^{\frac{1}{p_2}}$ holds for all nonnegative functions f and g, with a positive constant C independent of f and g, for all possible values of q, $p_1$ and $p_2$ with $1<q,p_1,p_2<\infty$. We also characterize the good weights for the weighted bilinear n-dimensional Hardy inequality to hold.     

Comparison of three sequential extraction procedures for fractionation of arsenic from highly polluted mining sediments

Three sequential extraction procedures were evaluated for the study of fractionation of arsenic in environmental solid samples. The procedures considered were as follows: i) the standardized and widely recognised BCR procedure, conceived for the study of the partitioning of heavy metals; ii) the procedure developed by Manful, who adapted a phosphorus scheme for arsenic fractionation; and iii) a novel sequential extraction scheme especially devised for arsenic. The efficiency and suitability of these methods and the corresponding extraction steps for partitioning arsenic obtained from the most important solid forms were tested by application of the methods to real sediment samples heavily polluted by mining activity. Results showed the BCR scheme was inappropriate for arsenic fractionation. The procedure could, nevertheless, be a first approach for the assessment of arsenic partitioning, because its first extraction step can be regarded as adequate for the estimation of the most easily mobilizable arsenic. Although the Manful scheme results in a more differentiated arsenic pattern, some drawbacks arise from the lack of selectivity of some of the reagents used, for example overlapping of specific target phases, overestimation of adsorbed arsenate because of inadequate coprecipitation processes, and the inability to discriminate among amorphous and crystalline oxyhydroxides which are mainly responsible for arsenic retention. The novel procedure achieves the most suitable arsenic fractionation, because the main phases retaining arsenic are selectively targeted according to mobilization potential. In addition, the simplicity of its extraction steps would enable automation in a continuous flow scheme.     

The Fluorophore 4′,6‐Diamidino‐2‐phenylindole (DAPI) Induces DNA Folding in Long Double‐Stranded DNA

DAPI (4′,6‐diamidino‐2‐phenylindole) is a widely used fluorescent dye, whose complicated binding features to DNAs and RNAs have been the object of debates and are still not fully understood. In this study, different approaches were employed, including binding equilibrium measurements (spectrofluorometry), melting experiments (spectrophotometry), viscometric measurements, circular dichroism, and T‐jump kinetic analyses; all data concur in shedding light on the complex mechanistic aspects of the binding mode of DAPI to natural DNA. Conditions are found that induce the mode of the DAPI/DNA interaction to change from groove binding to intercalation. Moreover, it is observed, for the first time, that DAPI is able to induce the formation of a rather compact polymer–dye adduct under particular conditions. The results suggest that this form is a folded or coiled DNA structure stabilized by DAPI dye bridges.     

Effect of oviductal secretion components on the fertilizing capacity of amphibian sperm: biological and ultrastructural studies

The present study was carried out to analyze the fertilization-supporting activity of Rhinella arenarum egg-jelly components. Spermatozoa were treated with diffusible factor (DF) constituted by the components released from the jelly coat into deionized water or with full jelly (FJ) containing all the components secreted by the oviductal pars convoluta (PC) during the transit of the oocytes through the duct, or with washed jelly (WJ) constituted only by structural components. Both jellies were solubilized by ultraviolet irradiation. These gametes were used for ultrastructural and biological studies in order to determine the acrosome state and the fertilizing capacity. Additional experiments were performed by using Ca(2+), a diffusible cation present in R. arenarum jelly envelopes. Results demonstrated a marked increase in the acrosome reaction (AR) of sperm treated with FJ or DF compared to the controls (Ringer's solution), no significant differences being observed between both treatments, while WJ showed low AR percentages similar to the ones obtained with the controls. The addition of Ca(2+) induced an increase in this parameter in a dose-dependent manner, although the values reached with FJ or DF were not attained. The results of the "in vitro" fertilization show a strong inverse association to the acrosome reaction (AR) rate. Treatment with Ca(2+) at the concentration present in the jelly (6.3 ± 0.9 mM) inhibited the fertilizing capacity as a function of incubation time, showing that at 2 min there was a decrease in the fertilization percentages compared to 10% Ringer's. Data indicated that Ca(2+) present in jelly is involved in the AR induction but suggests the possible participation of other diffusible and/or structural components of the oviductal secretion in this process.     

LC‐DAD/ESI‐MS/MS study of phenolic compounds in ash (Fraxinus excelsior L. and F. americana L.) heartwood. Effect of toasting intensity at cooperage

The phenolic composition of heartwood extracts from Fraxinus excelsior L. and F. americana L., both before and after toasting in cooperage, was studied using LC‐DAD/ESI‐MS/MS. Low‐molecular weight (LMW) phenolic compounds, secoiridoids, phenylethanoid glycosides, dilignols and oligolignols compounds were detected, and 48 were identified, or tentatively characterized, on the basis of their retention time, UV/Vis and MS spectra, and MS fragmentation patterns. Some LMW phenolic compounds like protocatechuic acid and aldehyde, hydroxytyrosol and tyrosol, were unlike to those for oak wood, while ellagic and gallic acid were not found. The toasting of wood resulted in a progressive increase in lignin degradation products with regard to toasting intensity. The levels of some of these compounds in medium‐toasted ash woods were much higher than those normally detected in toasted oak, highlighting vanillin levels, thus a more pronounced vanilla character can be expected when using toasted ash wood in the aging wines. Moreover, in seasoned wood, we found a great variety of phenolic compounds which had not been found in oak wood, especially oleuropein, ligstroside and olivil, along with verbascoside and isoverbascoside in F. excelsior, and oleoside in F. americana. Toasting mainly provoked their degradation, thus in medium‐toasted wood, only four of them were detected. This resulted in a minor differentiation between toasted ash and oak woods. The absence of tannins in ash wood, which are very important in oak wood, is another peculiar characteristic that should be taken into account when considering its use in cooperage. Copyright © 2012 John Wiley & Sons, Ltd.     

Zampanolide, a potent new microtubule-stabilizing agent, covalently reacts with the taxane luminal site in tubulin α,β-heterodimers and microtubules

Zampanolide and its less active analog dactylolide compete with paclitaxel for binding to microtubules and represent a new class of microtubule-stabilizing agent (MSA). Mass spectrometry demonstrated that the mechanism of action of both compounds involved covalent binding to β-tubulin at residues N228 and H229 in the taxane site of the microtubule. Alkylation of N228 and H229 was also detected in α,β-tubulin dimers. However, unlike cyclostreptin, the other known MSA that alkylates β-tubulin, zampanolide was a strong MSA. Modeling the structure of the adducts, using the NMR-derived dactylolide conformation, indicated that the stabilizing activity of zampanolide is likely due to interactions with the M-loop. Our results strongly support the existence of the luminal taxane site of microtubules in tubulin dimers and suggest that microtubule nucleation induction by MSAs may proceed through an allosteric mechanism.