Pentopyranosyl Oligonucleotide Systems. 9th Communication

Pyranosyl‐RNA (‘p‐RNA’ ) is an oligonucleotide system isomeric to natural RNA and composed of the very same building blocks as RNA. Its generational, chemical, and informational properties are deemed to be those of an alternative nucleic acid system that could have been a candidate in Nature's evolutionary choice of the molecular basis of genetic function. We consider the study of the chemistry of p‐RNA as etiologically relevant in the sense that knowledge of its structural, chemical, and informational properties on the chemical level offers both a perspective and reference points for the recognition of specific structural assets of the RNA structure that made it the (supposedly) superior system among possible alternatives and, therefore, the system that became part of biology as we know it today. The paper describes the chemical synthesis of β‐d‐ (and L )‐ribopyranosyl‐(4′→2′)‐oligonucleotide sequences, presents a resume of their structural and chemical properties, and cautiously discusses what we may and may not have learned from the pyranosyl isomer of RNA with respect to the conundrum of RNA's origin.     

Membrane characterization and solute diffusion in porous composite nanocellulose membranes for hemodialysis

The membrane and solute diffusion properties of Cladophora cellulose and polypyrrole (PPy) functionalized Cladophora cellulose were analyzed to investigate the feasibility of using electroactive membranes in hemodialysis. The membranes were characterized with scanning electron microscopy, ζ-potentiometry, He-pycnometry, N₂ gas adsorption, and Hg porosimetry. The diffusion properties across the studied membranes for three model uremic toxins, i.e. creatinine, vitamin B12 and bovine serum albumin, were also analyzed. The characterization work revealed that the studied membranes present an open structure of weakly negatively charged nanofibers with an average pore size of 21 and 53 nm for pristine cellulose and PPy-Cladophora cellulose, respectively. The results showed that the diffusion of uremic toxins across the PPy-Cladophora cellulose membrane was faster than through pure cellulose membrane, which was related to the higher porosity and larger average pore size of the former. Since it was found that the average pore size of the membranes was larger than the hydrodynamic radius of the studied model solutes, it was concluded that these types of membranes are favorable to expand the Mw spectrum of uremic toxins to also include conditions associated with accumulation of large pathologic proteins during hemodialysis. The large average pore size of the composite membrane could also be exploited to ensure high-fluxes of solutes through the membrane while simultaneously extracting ions by an externally applied electric current.     

Robotic heavy metal anodic stripping voltammetry: ease and efficacy for trace lead and cadmium electroanalysis

A novel strategy for the automation of trace lead (Pb²⁺) and cadmium (Cd²⁺) anodic stripping voltammetry (ASV) is described. This was achieved using an electrode assembly comprising a small standard reference electrode, a Pt wire counter electrode, and an in situ bismuth-plated pencil lead working electrode for ASV in a robotic device adapted for measurements in a 24-well microtiter plate format. The movement of the electrode assembly through individual wells was by computer-controlled micropositioning, and each microtiter plate run included a sequence of electrode pretreatment, water rinsing, and simultaneous Pb²⁺ and Cd²⁺ ASV measurements. Analyte concentrations down to 2 μg/L (Pb²⁺) and 20 μg/L (Cd²⁺) could be measured in drinking and tap water, a wastewater reference material and a soil sample, with an accuracy and standard deviation typical of stripping analysis. This robotic electrochemical strategy offers automated trace metal analysis with simple instrumentation and is suggested as an option for routine use in analytical laboratories such as those providing environmental heavy metal testing services.     

An Asymmetric Edge-Sharing Bioctahedral Complex: (η2-DAniF)MoIII(μ-DAniF)2(μ-O,Cl)MoVCl2 (DAniF=N,N′-di-p-anisylformamidinate)

A novel asymmetric, edge-sharing bioctahedral complex with formamidinato ligands ( ²-DAniF)Mo(-DAniF)₂(-O,Cl)MoCl₂, 1, (DAniF=N,N-di-p-anisylformamidinate) has been isolated as a byproduct from the preparation of the dimolybdenum(II,III) compound Mo₂(DAniF)₃Cl₂. An X-ray crystallographic study shows that the structure consists of edge-sharing bioctahedra, with the shared edge defined by the vector joining the: -O and -Cl ligands. Compound 1 is best formulated as a mixed-valent Mo^IIIMo^V compound, the Mo(V) ion being that with the two terminal Cl^– ligands. The cyclic voltammogram of 1 shows a reversible reduction at –0.472 V and a reversible oxidation at 1.028 V vs. the Ag/AgCl reference electrode, while the absorption spectrum of 1 reveals an intense low energy absorption at 523 nm ( _max=12 500) which is attributed to an intervalence charge transfer transition. Crystallographic data for 1 are as follows: a=13.387(1) Å, b=15.500(2) Å, c=21.855(2) Å, =98.786(2)°, V=4481.8(8) ų, P2₁/c, R1 (wR2)=0.082 (0.177).     

The modulating possibilities of dicarbollide clusters: optimizing the Kharasch catalysts

exo-Cluster dicarbollides substitution has allowed tuning of the E degrees (Ru(II)/Ru(III)) potential to obtain the best-performing Kharasch catalyst. We postulate that this is possible through the to-and-fro electron movement between the boron cluster and the sulfonium moieties.     

Antibiotic protected silver nanoparticles for microbicidal cotton

Surface coating of metal nanoparticles is one of the major aspects to be optimized in the design of antimicrobial nanoparticles. The novelty of this work is that antimicrobial derivatives have been used as stabilizers to protect silver nanoparticles (Ag NPs). Microbicidal activity studies of fabricated cotton textiles coated with these Ag@Antibio were performed. Protective ligand layers of Ag NPs resulted to be a deterministic factor in their antimicrobial activity. The best bactericidal activity was obtained for Fabric TAM (coated with Ag NPs with triarylmethane derivates in surface, Ag@TAMSH), with a bacterial decrease of 3 log units for the S. aureus strain. Intrinsic antibiotic activity and partial positive charge of the TAMSH probably enhanced their antimicrobial effects. Fabric Eu (coated with Ag NPs with eugenol derivates in surface, Ag@EugenolSH) and Fabric FQPEG (coated with Ag NPs embedded in PEG-fluoroquinolone derivatives in surface, Ag@FQPEG) displayed antibacterial activity for both Staphylococcus aureus and Pseudomonas aeruginosa strains. These coated antimicrobial cotton fabrics can be applied in different medical textiles.     

SciFinder-guided rational design of fluorescent carbon dots for ratiometric monitoring intracellular pH fluctuations under heat shock

Intracellular pH plays a significant role in various biological processes, including cell proliferation, apoptosis, metabolism, enzyme activity and homeostasis. In this work, a novel design strategy for the preparation of pH responsive carbon dots (CDs-pH) for ratiometric intracellular imaging was reported. By using SciFinder database, fluorescent CDs-pH with the required pK_a value of 6.84 were rationally designed, which is vital important for precise sensing of intracellular pH. As a result, the synthesized CDs-pH demonstrated robust ability to test pH fluctuations within the physiological range of 5.4-7.4. The CDs-pH was further utilized for fluorescent ratiometric imaging of pH in living HeLa cells, effectively avoided the influence of autofluorescence from native cellular species. Moreover, real-time monitoring of intracellular pH fluctuation under heat shock was successfully realized. This SciFinder-guided design strategy is simple and flexible, which has a great potential to be used for the development of other types of CDs for various applications.     

Strong antiferromagnetic coupling in doubly N,O oximato-bridged dinuclear copper(II) complexes

The use of di-2-pyridyl ketone oxime, (py)pkoH, and phenyl 2-pyridyl ketone oxime, ppkoH, in copper(II) hexafluoroacetylacetonate chemistry is reported. The reaction of CuCl₂·2H₂O with one and two equivalents of ppkoH and Na(hfac), respectively, in CH₂Cl₂ affords the dinuclear complex [Cu₂(hfac)₂(ppko)₂] (1) in excellent yield. The replacement of ppkoH by (py)pkoH gives the isostructural compound [Cu₂(hfac)₂{(py)pko}₂] (2) in good yield. The Cu^II atoms in both 1 and 2 are doubly bridged by the oximate groups of two η¹:η¹:η¹:μ₂ ppko⁻ and (py)pko⁻ ligands, respectively. The bridging Cu–(R–NO)–Cu′ units are not planar, with the torsion angles being 23.2° (1) and 20.3° (2). A bidentate chelating hfac⁻ ligand completes five-coordination at each square pyramidal metal ion. The hfac⁻-free reaction system CuCl₂·2H₂O/(py)pkoH/NEt₃ (1:2:1) gives instead the mononuclear complex [CuCl{(py)pko}{(py)pkoH}] (3) in very good yield. The Cu^II atom is coordinated by two N,N′-bidentate (py)pko⁻/(py)pkoH chelates and a monodentate chloride anion resulting in a distorted square pyramidal geometry around the metal center. Variable-temperature, solid-state dc magnetic studies were carried out on the representative dinuclear complex 1 in the 2.0–300 K range. The data indicate a very strong antiferromagnetic exchange interaction and a resulting S = 0 ground state, which is well isolated from the S = 1 excited state. The J value of −720 cm⁻¹ was derived from the fitting of the experimental data using the Hamiltonian H = −J(S₁ · S₂).     

Fiber optic multi-channel protein detector for use in preparative continuous annular chromatography

On-line coupling continuous-flow liquid membrane extraction (CFLME) with HPLC, a novel automatic system was developed for the determination of sulfonylurea herbicides in water. After an automatic trace-enrichment process by CFLME, which is the combination of continuous flow liquid-liquid extraction and support liquid membrane (SLM) extraction, the target analytes were concentrated in 50 microl of 0.2 M Na2CO3-NaHCO3 (pH 10.0) buffer. The concentrated sample solutions were injected directly onto a C18 analytical column with a valve, and detected at 240 nm with a diode array detector. Metsulfuron methyl (MSM), and DPX-A 7881 were baseline separated with a mobile phase consisting of methanol and 67 mM KH2PO4-Na2HPO4 (pH 5.91) buffer (45+55, v+v) at a flow-rate of 1.0 ml min(-1). With an enrichment time of 10 min and enrichment sample volume of 20 ml, the enrichment factors and detection limits are 100 and 0.05 microg l(-1) for MSM, and 96 and 0.1 microg l(-1) for DPX-A 7881, respectively. The linear range and precision (RSD) are 0.1-50 microg l(-1) and 7.0% for MSM, and 0.2-50 microg l(-1) and 9.2% for DPX-A 7881, respectively. This proposed method was applied to determine MSM and DPX-A 7881 in seawater, tap water, and bottled mineral water with spiked recoveries in the range of 83-95% for MSM and 88-100% for DPX-A 7881, respectively.     

Characterization of different types of cellulose by dielectric spectroscopy

Various well dried solid celluloses, such as nativecelluloses from different sources, different pulps and regenerated cellulosefibers were compared by dielectric relaxation spectroscopy (DRS) in the lowfrequency (10 mHz to 5 MHz) and low temperature(–130 to 20 °C) range. No significant differences werefound in the polymeric dynamics. In addition, the influence of the watercontenton the -relaxation and the _wet relaxation wasinvestigated for morphologically very different celluloses such as cottonlinters, highly amorphous bead cellulose and lyocell fibers. The lyocell fiberswere investigated in the unmodified form and after modification by a treatmentwith alkali, after mild bleaching and after chemical crosslinking. It was foundthat the water content influences the dielectric dynamics and the intensityparameters differently for these different materials. NaOH-activation usingdifferent lye concentrations also influenced the dielectric dynamics. Finally,opportunities and limitations of DRS as a diagnostic tool are discussed.