Lithol Red: a systematic structural study on salts of a sulfonated azo pigment

The first systematic series of single-crystal diffraction structures of azo lake pigments is presented (Lithol Red with cations=Mg(II), Ca(II), Sr(II), Ba(II), Na(I) and Cd(II)) and includes the only known structures of non-Ca examples of these pigments. It is shown that these commercially and culturally important species show structural behaviour that can be predicted from a database of structures of related sulfonated azo dyes, a database that was specifically constructed for this purpose. Examples of the successful structural predictions from the prior understanding of the model compounds are that 1) the Mg salt is a solvent-separated ion pair, whereas the heavier alkaline-earth elements Ca, Sr and Ba form contact ion pairs, namely, low-dimensional coordination complexes; 2) all of the Lithol Red anions exist as the hydrazone tautomer and have planar geometries; and 3) the commonly observed packing mode of alternating inorganic layers and organic bilayers is as expected for an ortho-sulfonated azo species with a planar anion geometry. However, the literature database of dye structures has no predictive use for organic solvate structures, such as that of the observed Na Lithol Red DMF solvate. Interestingly, the Cd salt is isostructural with the Mg salt and not with the Ca salt. It is also observed that linked eight-membered [MOSO](2) rings are the basic coordination motif for all of the known structures of Ca, Sr and Ba salts of sulfonated azo pigments in which competing carboxylate groups are absent.     

General and efficient insertion of carbons carrying benzotriazole

Anions formed from the lithiation of 1-(1-benzotriazolylalkyl)benzotriazoles (1, 6) and 1-(1-methylthioalkyl)benzotriazoles (10 and 10a) with n-BuLi underwent additions to cyclic and acyclic ketones giving intermediates 3a-f, 7b-f, and 11b-d, respectively, in excellent yields. Thermal rearrangements of intermediates 3a,b,d-f and 7b-d,f in the presence of zinc bromide provided one-carbon chain-extended or ring-expanded alpha-benzotriazolyl ketones 4a,b,d-f and 8b-d,f in moderate yields with excellent regioselectivity. By contrast, intermediates 11b-d on treatment with zinc bromide loose a molecule of benzotriazole followed by intramolecular cyclization of the resulting intermediates 12b-d to provide the 2,3- and 1,2,3-substituted indenes 13b-d in good yields.     

Properties of the polyhydride anions [WH5(PMe2Ph)3]- and [ReH4(PMePh2)3]- and periodic trends in the acidity of polyhydride complexes

The new anionic complexes [K(18-crown-6)][WH5(PMe2Ph)3], [K(1,10-diaza-18-crown-6)][WH5(PMe2Ph)3], [K(2,2,2-crypt)][ReH4(PMePh2)3], and [K(1,10-diaza-18-crown-6)][ReH4(PMePh2)3] were prepared by reaction of KH/crown or KH/crypt with the appropriate neutral polyhydride WH6(PMe2Ph)3 or ReH5(PMePh2)3. The rate of deprotonation of the rhenium hydride in THF is much greater for the reaction involving crypt compared with that of crown. The structure of [ReH4(PMePh2)3]- is distorted pentagonal bipyramidal as determined by an X-ray diffraction study of the crypt salt. No hydridic-protonic M-H...HN bonding is detected between the hydrides of the anionic hydrides and the amino hydrogens of the cations [K(1,10-diaza-18-crown-6)]+ suggesting that stronger M-H...K interactions are present. Acid dissociation constants Ka of polyhydride complexes in THF, approximately corrected for ion pairing, are determined by NMR in order to better understand the periodic trends of metal hydrides. The pKalphaTHF of (WH6(PMe2Ph)3/[WH5(PMe2Ph)3]-) is 42+/-4 according to the equilibrium set up by reacting WH6(PMe2Ph)3 with [K(2,2,2-crypt)][ReH6(PCy3)2]. The pKalphaTHF for ReH5(PMePh2)3 can be estimated as greater than the pKalphaTHF of 38 for HNPh2 and less than the pKalphaTHF of 41 for ReH7(PCy3)2. Reaction of the phosphazene base P4-tBu with ReH7(PCy3)2 gave an equilibrium with [HP4-tBu]+[ReH6(PCy3)2]- whereas reaction with WH6(PMe2Ph)3 gave an equilibrium with [HP4-tBu]+[WH5(PMe2Ph)3]-. From these and a related equilibrium, the pKalphaTHF of [HP4-tBu]+ is found to be 40+/-4. In general, neutral complexes MHx(PR3)n (M=W, Re, Ru, Os, Ir; n=3, 2) studied to date have pKalphaTHF values from 30 to 44 on going from phenyl-substituted to alkyl-substituted phosphine ligands whereas MHx(PR3)n+ (M=Re, Fe, Ru, Os, Co, Rh, Ni, Pd, Pt; n=4, 3), including diphosphine ligands ((PR3)2=PR2-PR2), have values from 12 to 23. From the equilibrium established from the reaction of [HP2-tBu][BPh4] and [K(2,2,2-crypt)][OP(OEt)2NPh], [HP2-tBu]+ was calculated to have a pKalphaTHF of 30+/-4. The equilibrium constant for the similar deprotonation reaction with [K(18-crown-6)][{ReH2(PMePh2)2}2(mu-H)3] confirmed this value.     

Selective addition to iridium of aryl C-H bonds ortho to coordinating groups. Not chelation-assisted

Precursors of the pincer-ligated iridium species, (PCP)Ir, react with nitrobenzene or acetophenone at ambient temperature to give O,C-chelated complexes resulting from addition of an aryl C-H bond and coordination of a nitro or acetyl oxygen. The C-H additions appear to be completely regioselective for the position ortho to the functional group; however, structural characterization and low-temperature NMR studies demonstrate that the reaction does not proceed via coordination of the functional group followed by C-H addition. In the case of nitrobenzene, kinetic preference for the para and meta positions is demonstrated at low temperature. Addition occurs more slowly at the ortho position, without assistance by the functional group; the ortho-C-H addition product is then trapped by chelation.     

Discovery of a protein-metabolite interaction between unsaturated fatty acids and the nuclear receptor Nur77 using a metabolomics approach

Neuron-derived clone 77 (Nur77) is an orphan nuclear receptor with currently no known natural ligands. Here we applied a metabolomics platform for detecting protein-metabolite interactions (PMIs) to identify lipids that bind to Nur77. Using this approach, we discovered that the Nur77 ligand-binding domain (Nur77LBD) enriches unsaturated fatty acids (UFAs) in tissue lipid mixtures. The interaction of Nur77 with arachidonic acid and docosahexaenoic acid was subsequently characterized using a number of biophysical and biochemical assays. Together these data indicate that UFAs bind to Nur77LBD to cause changes in the conformation and oligomerization of the receptor. UFAs are the only endogenous lipids reported to bind to Nur77, which highlights the use of metabolomics in the discovery of novel PMIs.     

Kinetics of swelling of polyether-modified poly(acrylic acid) microgels with permanent and degradable cross-links

Spherical particles of 50-100 mum size composed of poly(acrylic acid) networks covalently bonded to Pluronic polyether copolymers were tested for swelling in aqueous media. The microgels were cross-linked either by permanent ethylene glycol dimethacrylate (EGDMA) cross-links alone or by EDGMA together with reversible disulfide or biodegradable azoaromatic cross-links. Optimum conditions for a rapid, diffusion-limited swelling of the pH- and temperature-sensitive microgels with nondegradable cross-links were found. The microgels cross-linked by disulfide groups and equilibrium-swollen in the buffer solution exhibited degradation-limited kinetics of swelling under physiological conditions, with a first-order reaction constant, k(1), linearly proportional to the concentration of reducing agents such as dithiotreitol and tris(2-carboxyethyl)phosphine (TCEP). A severalfold faster swelling in the presence of more powerful reducing agent, TCEP, was observed, indicating the chemical specificity of the microgel swelling. The reoxidation of the thiol groups into disulfide cross-links by sodium hypochlorite led to the restoration of the microgels' diameter measured prior to the reduction-reoxidation cycle, which confirms the shape memory of the microgels. Enzymatically degradable azoaromatic cross-links enabled slow microgel swelling due to degradation of the cross-links by azoreductases from the rat intestinal cecum. The low rate of swelling of the Pluronic-containing microgels can enable sustained drug release in colon-specific drug delivery.     

Identification of individual acids in a commercial sample of naphthenic acids from petroleum by two-dimensional comprehensive gas chromatography/mass spectrometry

The identification of most individual members of the complex mixtures of carboxylic acids found in petroleum ('naphthenic acids') has eluded chemists for over a century; they remain unresolved by conventional gas chromatographic methods. Recently, however, we successfully used two-dimensional comprehensive gas chromatography/mass spectrometry to identify numerous individual diamondoid acids in the naphthenic acids of oil sands process water (OSPW). We have now applied the same methods to a study of a mixture of commercially available naphthenic acids originally refined from petroleum. The results confirm that OSPW and refined petroleum contain very different distributions of acids, as noted previously, although some of the diamondoid acids recently identified in OSPW were detectable in both. Rather, two-dimensional comprehensive gas chromatography/time-of-flight mass spectrometry (GCxGC/ToF-MS) of the methyl esters of the petroleum acids and of numerous acids synthesised for comparison showed that the former comprised mainly C(8-18) straight-chain, methyl-branched, acyclic isoprenoid, cyclohexyl and isomeric octahydropentalene, perhydroindane and perhydronaphthalene (decalin) acids. Some of the latter bicyclic acids occurred as both the non-alkyl-substituted isomers and the bicyclic ethanoic and propanoic acids. Also present in minor quantities was a range of phenyl carboxylic and substituted phenyl alkanoic acids, and traces of non-acids, including trimethylnaphthalenes, again identified by comparison with the synthesised compounds. These results represent some of the first identifications of multiple individual naphthenic acids in commercial mixtures originating from petroleum and provide a basis for future studies of the petroleum geochemistry, toxicities and environmental impacts of the acids. Furthermore, characterisation of the acids will be important for improving the understanding of the role of naphthenic acids in petroleum engineering, particularly for oil pipeline deposition problems.     

Human cytokines characterized by dielectric thermal analysis, thermogravimetry, and differential scanning calorimetry

Malaria affects over 500 million people worldwide leading to 1–2 million deaths each year, the majority of whom are children. Four Plasmodium species cause malaria in humans. To properly diagnose, and correctly treat malarial infections, accurate diagnosis of infection is required. Proper diagnosis of infection will result in a reduction of morbidity, mortality, and of drug resistant parasites. However, the current tests for malaria diagnosis do not efficiently identify the appropriate human and parasite biomarkers associated with disease. Detection of specific inflammatory mediators such as cytokines associated with malaria pathogenesis will aid the determination of disease progression, disease prognosis, and the early diagnosis of malaria infection. In this study, we used dielectric thermal analysis (DETA), thermogravimetric analysis, and differential scanning calorimetry (DSC) to characterize five human cytokines (IL-1α, IL-2, IL-4, IL-6, and IL-10), to demonstrate how their thermoanalytical properties can be investigated for sensor design. Analysis for DETA was performed at a frequency range of 0.1–300,000 Hz. Permittivity and loss factor measurements were used to calculate tan δ values. Peak frequencies were used to determine dielectric signatures for each cytokine. The peak frequencies were different for each cytokine analyzed. In addition, activation energies were frequency dependent for IL-2 but frequency independent for the remaining four cytokines. Cytokines were also examined using DSC which established variance in heat of crystallization and heat of fusion of solvent among the five cytokines. A noticeable differentiation was observed with IL-1α among the other four cytokines when analyzed using trend analysis. Detection of unique dielectric signals will aid development of sensitive dielectric sensors capable of detecting cytokines in various human samples.     

Ring-opening reactions of halogenated N-aryl-1,2,3,4-tetrahydroisoquinoline and 2,3,4,5-tetrahydro-1H-2-benzazepine derivatives

Compounds 4a-4d, 4f and 10 were prepared and their ring-opening reactions with N-bromosuccinimide (NBS) investigated. Compounds 4a and 4b gave a mixture of products which did not contain any significant quantity of the corresponding aldehydes 5a and 5b whereas compounds 4c, 4d and 4f gave exclusively the aldehydes 5c, 5d and 5f respectively. Compound 10 similarly gave the aldehyde 11 when treated with NBS.     

Understanding binding affinity: a combined isothermal titration calorimetry/molecular dynamics study of the binding of a series of hydrophobically modified benzamidinium chloride inhibitors to trypsin

The binding of a series of p-alkylbenzamidinium chloride inhibitors to the serine proteinase trypsin over a range of temperatures has been studied using isothermal titration (micro)calorimetry and molecular dynamics simulation techniques. The inhibitors have small structural variations at the para position of the benzamidinium ion. They show small differences in relative binding affinity but large compensating differences in enthalpy and entropy. Binding affinity decreases with increased branching at the first carbon but increases with increasing the length of a linear alkyl substituent, suggesting that steric hindrance and hydrophobic interactions play dominant roles in binding. Structural analysis showed that the backbone of the enzyme was unaffected by the change of the para substituent. In addition, binding does not correlate strongly with octanol/water partition data. To further characterize this system, the change in the heat capacity on binding, the change in solvent-accessible surface area on binding, the effect of inhibitor binding on the hydration of the active site, the pK(a) of His57, and interactions within the catalytic triad have been investigated. Although the changes in inhibitor structure are small, it is demonstrated that simple concepts such as steric hindrance, hydrophobicity, and buried surface area are insufficient to explain the binding data. Other factors, such as access to the binding site and the cost of dehydration of the active site, are of equal or greater importance.