Comparison of various silica‐based monoliths for the analysis of large biomolecules†

In the present study, three types of silica‐based monoliths, i.e. the first and second generations of commercial silica monolithic columns and a wide‐pore prototype monolith were compared for the analysis of large biomolecules. These molecules possess molecular weights between 1 and 66 kDa. The gradient kinetic performance of the first‐generation monolith was lower than that of the second generation, for large biomolecules (>14 kDa) but very close with smaller ones (1.3–5.8 kDa). In contrast, the wide‐pore prototype column was particularly attractive with proteins larger than 19 kDa (higher peak capacity). Among these three columns, the selectivity and retention remained quite similar but a possible larger number of accessible and charged residual silanols was noticed on the wide‐pore prototype material, which led to unpredicted small changes in selectivity and slightly broader peaks than expected. The peak shapes attained with the addition of 0.1% formic acid in the mobile phase remained acceptable for MS coupling, particularly for biomolecules of less than 6 kDa. It was found that one of the major issues with all of these silica‐based monoliths is the possible poor recovery of large biomolecules (principally with monoclonal antibody fragments of more than 25 kDa).     

Site-specific C content by quantitative isotopic C Nuclear Magnetic Resonance spectrometry: A pilot inter-laboratory study

Isotopic ¹³C NMR spectrometry, which is able to measure intra-molecular ¹³C composition, is of emerging demand because of the new information provided by the ¹³C site-specific content of a given molecule. A systematic evaluation of instrumental behaviour is of importance to envisage isotopic ¹³C NMR as a routine tool. This paper describes the first collaborative study of intra-molecular ¹³C composition by NMR. The main goals of the ring test were to establish intra- and inter-variability of the spectrometer response. Eight instruments with different configuration were retained for the exercise on the basis of a qualification test. Reproducibility at the natural abundance of isotopic ¹³C NMR was then assessed on vanillin from three different origins associated with specific δ¹³C_i profiles. The standard deviation was, on average, between 0.9 and 1.2‰ for intra-variability. The highest standard deviation for inter-variability was 2.1‰. This is significantly higher than the internal precision but could be considered good in respect of a first ring test on a new analytical method. The standard deviation of δ¹³C_i in vanillin was not homogeneous over the eight carbons, with no trend either for the carbon position or for the configuration of the spectrometer. However, since the repeatability for each instrument was satisfactory, correction factors for each carbon in vanillin could be calculated to harmonize the results.     

Atypical Oxidation Reaction by Thionyl Chloride: Easy Two‐Step Synthesis of N‐Alkyl‐1,4‐dithiines

Easy two‐step synthesis of a series of dithiines was performed from succinic anhydride via cyclization of the corresponding 4‐(alkylamino)‐4‐oxobutanoic acids (succinamic acids). The reaction, carried out in polar aprotic solvents, gave 4,8‐dithiine‐indacene‐1,3,5,7‐tetraones (diimides 3) via 3,7‐bis‐4,8‐dithia‐indacene‐1,5‐diones (diisoimides 2), which could be isolated. Surprisingly, in this reaction, thionyl chloride appeared as an oxidant, and this process seemed to be useful for the syntheses of S‐containing heterocyclic compounds such as 1,4‐dithiins. A mechanistic pathway was considered.     

Dioxane and Dioxine Heterocycles Obtained Simultaneously on a Same Substrate from the Condensation Reaction Between p-Hydroxyacetophenone and Polymerised Formaldehyde

The condensation reaction between polymerised formaldehyde and a ketone possessing a methylene group α to the carbonyl function, in the presence of a polystyrene (1) or fluorinated (2) ion-exchange catalyst, leads to the corresponding 1,3-dioxane and is characterized by excellent yield and selectivity.     

Synthesis of a New C-15 Phosphorus Ylide Used for the Preparation of Some β-End-Group Retinoid Derivatives

A synthesis of a new C-15 phosphorus ylide from a C-14 enaminone is reported. This reagent, which undergoes selective 1,2- or 1,4-additions with saturated and unsaturated aldehydes, may find some synthetic use for the preparation of β-end-group retinoid derivatives.     

Lipase from Carica papaya latex presents high enantioselectivity toward the resolution of prodrug (R,S)-2-bromophenylacetic acid octyl ester

Besides the well-known papain, lipolytic activity is another interesting enzymatic activity present in latex from Carica papaya. This lipolytic activity is strongly attached to the latex solid phase, resulting in a naturally immobilized biocatalyst. In this work we describe the kinetic resolution of (R,S)-2-bromophenylacetic acid octyl ester by Carica papaya crude latex and two partially purified latex fractions. Several parameters, such as substrate concentration and solvent effects were studied. The best results were obtained using decane as solvent with 50 mM of substrate and 50 mg/mL enzyme/reaction medium; under these conditions, a high enantioselectivity (E >200) was obtained with crude latex. A twofold increase of the initial rate maintaining E >200 was obtained using purified fractions without protease and without esterase. Lipase from Carica papaya latex is the most enantioselective wild-type enzyme ever described for the studied reaction.     

Non-linear parallel solver for detecting point sources in CMB maps using Bayesian techniques

In this work we present a suitable computational tool to deal with large matrices and solve systems of non-linear equations. This technique is applied to a very interesting problem: the detection and flux estimation of point sources in Cosmic Microwave Background (CMB) maps, which allows a good determination of CMB primordial fluctuations and leads to a better knowledge of the chemistry at the early stages of the Universe. The method uses previous information about the statistical properties of the sources, so that this knowledge is incorporated in a Bayesian scheme. Simulations show that our approach allows the detection of more sources than previous non-Bayesian techniques, with a small computation time.     

Coexpression of CPR from Various Origins Enhances Biotransformation Activity of Human CYPs in S. pombe

Cytochrome P450 enzymes (CYPs or P450s) are the most important enzymes involved in the phase I metabolism of drugs (and other xenobiotics) in humans, and the corresponding drug metabolites are needed as reference substances for their structural confirmation and for pharmacological or toxicological characterization. We have previously shown that biotechnological synthesis of such metabolites is feasible by whole-cell biotransformation with human CYPs recombinantly expressed in the fission yeast Schizosaccharomyces pombe. It was the aim of this study to compare the activity of seven human microsomal CYPs (CYP2C9, CYP2D6, CYP3A4, CYP3A5, CYP3A7, CYP17, and CYP21) upon coexpression with NADPH-cytochrome P450 oxidoreductases (CPRs) from various origins, namely, human CPR (hCPR) and its homologues from fission yeast (ccr1) and the bishop’s weed Ammi majus (AmCPR), respectively. For this purpose, 28 recombinant strains were needed, with five of them having been constructed previously and 23 strains being newly constructed. Bioconversion experiments showed that coexpression of a CPR does not only influence the reaction rate but, in some cases, also exerts an influence on the metabolite pattern. For CYP3A enzymes, coexpression of hCPR yielded the best results, while for another two, hCPR was equally helpful as ccr1 (both CYP17 and CYP21) or AmCPR (CYP17 only), respectively. Interestingly, CYP2D6 displayed its highest activity when coexpressed with ccr1 and CYP2C9 with AmCPR. These results corroborate the view of CPR as a well-suited bio-brick in synthetic biology for the construction of artificial enzyme complexes.     

In-house validation for analytical methods and quality control for risk evaluation of chlordecone in food

Chlordecone was used until 1993 as a pesticide in the banana plantation of Martinique and Guadeloupe (French Antilles) against the root borer. This organochlorine pesticide was lipophilic, remnant, and toxic for human beings with both acute and chronic effects. Chlordecone was strongly absorbed and stored in soil and weakly decomposed in environment. Surveys conducted in 2001 revealed its presence in soil, rivers, and domestic food products. Local food (fruits and vegetables, cattle, poultry, and fish) was growing on soils, widely contaminated by chlordecone, used in the past as banana plantations. In 2003, French Administration asked for a risk evaluation for the Antilles population. The French Agency for Food Safety, proposed a Provisional Tolerable Daily Intake of 0.0005?mg?kg^?1?b.w.?day^?1, and an Acute Reference Dose of 0.01?mg?kg^?1?b.w.?day^?1, based on a toxicological risk assessment. The French National Reference Laboratory for pesticides has carried out two analytical methods, one for food of animal origin and another for food of fruit and vegetable origin. These methods were validated in the reference laboratory and dispatched to 13 laboratories for a proficiency test before the launch of two studies on Martinique and Guadeloupe food. About 900 samples from Martinique were sent to the network of laboratories for analysis of chlordecone. Performance parameters obtained through the proficiency test were briefly reported. The quality control test proposed in this study was discussed to shed light on the true variability achievable by intra-laboratory and inter-laboratory analysis. The limits of conventional quality-control procedures were discussed, and a process was proposed in order to get better confidence in analytical results.