Dual-mode registration of dynamic contrast-enhanced ultrasound combining tissue and contrast sequences

This study proposes a new method for automatic, iterative image registration in the context of dynamic contrast-enhanced ultrasound (DCE-US) imaging. By constructing a cost function of image registration using a combination of the tissue and contrast-microbubble responses, this new method, referred to as dual-mode registration, performs alignment based on both tissue and vascular structures. Data from five focal liver lesions (FLLs) were used for the evaluation. Automatic registration based on the dual-mode registration technique and tissue-mode registration obtained using the linear response image sequence alone were compared to manual alignment of the sequence by an expert. Comparison of the maximum distance between the transformations applied by the automatic registration techniques and those from expert manual registration reference showed that the dual-mode registration provided better precision than the tissue-mode registration for all cases. The reduction of maximum distance ranged from 0.25 to 9.3 mm. Dual-mode registration is also significantly better than tissue-mode registration for the five sequences with p  -values lower than 0.03$0.03$. The improved sequence alignment is also demonstrated visually by comparison of images from the sequences and the video playbacks of the motion-corrected sequences. This new registration technique better maintains a selected region of interest (ROI) within a fixed position of the image plane throughout the DCE-US sequence. This should reduce motion-related variability of the echo-power estimations and, thus, contribute to more robust perfusion quantification with DCE-US.     

An ab initio molecular dynamics study of ionic conductivity in hexagonal lithium lanthanum titanate oxide La0.5Li0.5TiO3

To date, the fastest lithium ion-conducting solid electrolytes known are the perovskite-type ABO₃ oxide, with A = Li, La and B = Ti, lithium lanthanum titanate (LLTO) Li_3x La_{( 2 \mathord}

Comparison of alignment free string distances for complete genome phylogeny

In this paper, we compare the accuracy of four string distances on complete genomes to reconstruct phylogenies using simulated and real biological data. These distances are based on common words shared by raw genomic sequences and do not require preliminary processing steps such as gene identification or sequence alignment. Moreover, they are computable in linear time. The first distance is based on Maximum Significant Matches (MSM). The second is computed from the frequencies of all the words of length k (KW). The third distance is based on the Average length of maximum Common Substrings at any position (ACS). The last one is based on the Ziv–Lempel compression algorithm (ZL). We describe a simulation process of evolution to generate a set of sequences having evolved according to a random tree topology T. This process allows both base substitution and fragment insertion/deletion, including horizontal transfers. The distances between the generated sequences are computed using the four formulas and the corresponding trees T′ are reconstructed using Neighbor-Joining. T and T′ are compared according to topological criteria. These comparisons show that the MSM distance outperforms the others whatever the parameters used to generate sequences. Finally, we test the MSM and KW distances on real biological data (i.e. prokaryotic complete genomes) and we compare the NJ trees to a Maximum Likelihood 16S + 23S RNA tree. We show that the MSM distance provides accurate results to study intra-phylum relationships, much better than those given by KW.     

Crystallization in organo-mineral micro-domains in the crossed-lamellar layer of Nerita undata (Gastropoda, Neritopsina)

Crossed-lamellar shell microstructure consists of a sophisticated arrangement of interspersed lamellae, which is very commonly found in Gastropoda or Bivalvia shell layers. Its smallest constitutive microstructural units are usually described as sub-micrometric fibers, or rods, and form very ordered and regular patterns. Atomic force microscopy (AFM) and transmission electron microscopy (TEM) imaging confirms the presence of even smaller building units in the form of organo-mineral granules, and we further investigate their internal structure within aragonite crossed-lamellar internal layer of Nerita undata (Gastropoda, Neritopsina) shell. Their coalescence may have controlled anisotropically the propagation of the crystallographic coherence through this complex microstructure, as suggested by the propagation of the microtwinning pattern between neighboring granules.     

New amphiphilic polymers: Poly(N-alkylacrylamide-CO-vinylpyridinium)

A series of new amphiphilic polymers containing various amounts of N-methyl-4-vinylpyridinium units as hydrophilic part and N-dodecylacrylamide or N-decylacrylamide units as hydrophobic part have been prepared by quaternizing the cognate copolymers. Their behaviour in aqueous solutions has been studied by viscometry, as well as by fluorescence spectroscopy and tensiometry. Results are discussed in detail and a conformational model of the macromolecules at the interface (water/methylcyclohexane) is proposed in relation to the formation of microdomains in the aqueous media.     

Multivariate optimization of a solid phase microextraction-headspace procedure for the determination of benzene, toluene, ethylbenzene and xylenes in effluent samples from a waste treatment plant

A method based on solid-phase microextraction (SPME) and gas chromatography with flame ionization detection (GC-FID) has been optimized for the determination of benzene, toluene, ethylbenzene and xylenes (BTEX) in water released from a waste treatment plant. The extraction step was optimized using fractional factorial and central composite designs including the following experimental factors: saline concentration; extraction time; desorption time; agitation velocity; headspace volume. A multiple function was used to describe the experimental conditions for simultaneous extraction of the compounds. The procedure, based on direct SPME at 50 degrees C, using a polydimethylsiloxane fiber, showed good linearity (r>0.997 over a concentration range 2-200 microg L(-1)) and repeatability (relative standard deviation (RSD)<4.23%) for all compounds, with limits of detection ranging from 0.05 to 0.28 microg L(-1), and limits of quantification ranging from 0.14 to 0.84 microg L(-1). Concentrations of the target compounds in these samples were between 145.8 and 1891 microg L(-1).     

Photomagnetic properties of an iron(II) low-spin complex with an unusually long-lived metastable LIESST state

A comprehensive study of the photomagnetic behavior of the [Fe(L222N5)(CN)2].H2O complex has been carried out. This complex is characterized by a low-spin (LS) iron(II)-metal center up to 400 K and exhibits at 10 K the well-known Light-Induced Excited Spin State Trapping (LIESST) effect. The critical LIESST temperature (T(LIESST)) has been measured to be 105 K. The kinetics of the transition from the metastable high-spin (HS) state to the low-spin state have been determined and used for reproducing the experimental T(LIESST) curve. This study represents a second example of a fully low-spin iron(II)-metal complex up to 400 K, which can be photoexcited at low temperature with an atypical long-lived metastable HS state. This underlines the preponderant role of the inner coordination sphere for stabilizing the lifetime of the photoinduced HS state.     

Photochromic and redox properties of bisterpyridine ruthenium complexes based on dimethyldihydropyrene units as bridging ligands

We report herein the synthesis and characterization of four new bisterpyridine dinuclear ruthenium complexes containing the dimethyldihydropyrene (DHP) photochrome as bridging ligand. A synthetic strategy has been developed based on a Suzuki coupling reaction to synthesize these novel terpyridine-DHPs. The reactivity of these different ligands and dinuclear ruthenium complexes with light was examined by (1)H NMR and monitoring the changes in their absorption spectra upon irradiation at controlled wavelengths. The free ligands and their corresponding ruthenium complexes all displayed photochromic properties with highly efficient conversion between the closed stable isomers (DHP) and their open forms (CPD). The properties of the compounds in their closed and open forms were investigated by cyclic voltammetry, spectroscopy, and luminescence measurements.     

Glassy carbon electrode modified with a film of poly(Toluidine Blue O) and carbon nanotubes for nitrite detection

This work describes the modification of a glassy carbon electrode with poly(Toluidine Blue O) (GC/poly-TBO) and single-walled carbon nanotubes (SWCNT) for the electrocatalytic oxidation of nitrite. GC/poly-TBO was prepared by electropolymerization and used as such or after immobilizing SWCNT on the polymeric film to give a composite GC/poly-TBO-SWCNT electrode. The electrochemical and catalytic behavior of both electrodes was studied comparatively. It was observed that the presence of SWCNT contributed to enhance the electrocatalytic response for nitrite oxidation, as measured by amperometry at +0.92 V vs. Ag/AgCl/KCl_sat and pH 7. The response was linear with respect to the nitrite concentration in the 0.001–4 mM range, with a detection limit of 0.37 μM (based on signal to noise ratio of 3) for GC/poly-TBO-SWCNT. The proposed method was also applied to the determination of nitrite in a wastewater sample and compared to the spectrophotometric method.