Aminyl radical cyclization by means of anodic oxidation. Stereoselective synthesis of cis-1-methyl-2,5-disubstituted pyrrolidines

Neutral aminyl radicals generated by anodic oxidation of lithium alkenylamides 2 undergo a stereoselective cyclization to give $\text{cis}$-1-methyl-2,5-disubstituted pyrrolidines 4. Their $\text{cis}$ stereochemistry was confirmed by a comparison with $\text{trans}$-1,2-dimethyl-5-phenylpyrrolidine, the structure of which was established by X-ray crystallographic analysis of its quarternary ammonium bromide 6.     

Supramolecular hydrogels and organogels based on novel l-valine and l-isoleucine amphiphiles

New low-molecular-weight gelators based on l-valine and l-isoleucine gelators, which have a positively charged terminal group, can gel not only pure water and aqueous solutions containing inorganic acids and salts but also some organic solvents and oils.     

Pictet-Spengler reactions catalyzed by Brønsted acid-surfactant-combined catalyst in water or aqueous media

Perfluorooctanesulfonic acid (PFOSA), Brønsted acid-surfactant-combined catalyst, efficiently catalyzes the Pictet-Spengler reactions of β-arylethyl carbamate derivatives with aldehydes in water. The present reaction is accelerated by the addition of 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP).     

Sequence-dependent conformational energy of DNA derived from molecular dynamics simulations: toward understanding the indirect readout mechanism in protein-DNA recognition

Sequence dependence of DNA conformation plays a crucial role in its recognition by proteins and ligands. To clarify the relationship between sequence and conformation, it is necessary to quantify the conformational energy and specificity of DNA. Here, we make a systematic analysis of dodecamer DNA structures including all the 136 unique tetranucleotide sequences at the center by molecular dynamics simulations. Using a simplified conformational model with six parameters to describe the geometry of adjacent base pairs and harmonic potentials along these coordinates, we estimated the equilibrium conformational parameters and the harmonic potentials of mean force for the central base-pair steps from many trajectories of the simulations. This enabled us to estimate the conformational energy and the specificity for any given DNA sequence and structure. We tested our method by using sequence-structure threading to estimate the conformational energy and the Z-score as a measure of specificity for many B-DNA and A-DNA crystal structures. The average Z-scores were negative for both kinds of structures, indicating that the potential of mean force from the simulation is capable of predicting sequence specificity for the crystal structures and that it may be used to study the sequence specificity of both types of DNA. We also estimated the positional distribution of conformational energy and Z-score within DNA and showed that they are strongly position dependent. This analysis enabled us to identify particular conformations responsible for the specificity. The presented results will provide an insight into the mechanisms of DNA sequence recognition by proteins and ligands.     

High-resolution proton magnetic resonance and infrared spectra of poly(vinyl formal) and its model compounds

High-resolution proton magnetic resonance and infrared spectra of poly(vinyl formal) were studied in comparison with those of the model formals obtained from stereoisomers of pentane-2,4-diol and heptane-2,4,6-triol in order to learn spectral changes due to differences of the steric structures of the polymer. In the NMR spectrum of transformal obtained from dl diol or dl,dl (syndiotactic) triol, all proton signals were well interpreted by assuming a rapid chair-chair inversion of the formal ring. On the other hand, no such inversion was observed spectroscopically in cis-formal obtained from the meso diol or meso,meso (isotactic) triol, and the cis-formal ring was supposed to take a diequatorial form preferentially. Consequently, dioxymethylene protons gave a single peak (equivalent) in trans-formal and an AB quartet (nonequivalent) in cis-formal. In the spectra of poly(vinyl formal), the dioxymethylene signal was an overlap of the singlet and quartet in dimethylsulfoxide solution. Observations of the spectra of various poly(vinyl formals) obtained from poly(vinyl alcohols) of different tacticities and study of temperature dependence of the signal have shown that the singlet and quartet are attributed to trans- and cis- formals, respectively, in the polymer spectrum also. In the infrared spectra of poly(vinyl formals), the 800 and 785 cm^-1 bands were found to be related to cis- and trans-formal rings respectively. A linear relationship was confirmed between D₇₈₅/D₈₀₀ and trans/cis ratios determined from the peak intensities of the dioxymethylene proton signals.     

Adsorption of anions to zirconium(IV) and titanium(IV) chemically immobilized on gel-phase

Adsorption behaviors of 25 anions to zirconium(IV) and titanium(IV) chemically immobilized on a gel-phase were studied by ion chromatography and by batch adsorption experiments. The affinities of Zr(IV) to iminodiacetate as an anchoring group and to anions as a sample are much stronger than those of Ti(IV). On a Zr(IV) column, fourteen anions showed no retention, four anions showed pH-dependent retention in a low pH region, and seven anions were irreversibly adsorbed at pH <7. In the last group, fluoride was adsorbed both by the ligand exchange mechanism and the addition mechanism, while phosphate, arsenate and selenite were only by the ligand exchange mechanism. The structures of the adsorbed species are discussed.     

Density functional theory investigation of Eu(III) complexes with beta-diketonates and phosphine oxides: model complexes of fluorescence compounds for ultraviolet LED devices

The density functional theory was employed to investigate Eu(III) complexes with three beta-diketonates and two phosphine oxides (complex M1: Eu(bdk)3(TPPO)2, complex M2: Eu(bdk)3(TMPO)2, and complex M3: Eu(bdk)3(TPPO)(TMPO)) deemed to be the model complexes of the fluorescence compounds for the ultraviolet LED devices we have recently developed. For each complex, two minimum energy points corresponding to two different optimized geometries (structures A and B) have been found, and the difference of the energy between two minimum energy points is found to be quite small (less than 1 kcal/mol). Vertical excitation energies and oscillator strengths for each complex at two optimized geometries have been obtained by the time-dependent density functional theory, and the character of the excited states has been investigated. For complex M3, the absorption edge is red-shifted, and the oscillator strengths are relatively large. The efficiency of intersystem crossing and energy transfer from the triplet excited state to the Eu(III) ion is considered by calculating DeltaE(ISC) (the energy difference between the first singlet excited state and the first triplet excited state) and DeltaE(ET) (the difference between the excitation energy of the complex for the first triplet excited state and the emission energy of the Eu(III) ion for 5D to 7F).     

Palladium(0) complexes coordinated with substituted olefins and tertiary phosphine ligands

New palladium(0) complexes with a variety of coordinated olefins [Pd(olefin)(PMePh₂)₂] (II) (olefin = styrene, ethyl methacrylate, methyl methacrylate, methyl acrylate, methacrylonitrile, and dimethyl maleate), were prepared by the reactions of [PdEt₂(PMePh₂)₂] (I) with corresponding olefins in toluene. These complexes were characterized by means of elemental analysis, IR and ¹H NMR spectroscopy and the chemical reactions. The dissociation of the coordinated olefin from complex II in solution was confirmed by spectroscopic studies of [Pd(mma)(PMePh₂)₂] (mma = methyl methacrylate). From the variable temperature NMR study, kinetic parameters for the dissociation process were determined as E_a = 7 kcal/mol, and ΔS³ (293 K) = -30 cal/deg · mol. Some new hydrido complexes, [Pd(H)ClL₂] (IV) (L = PMePh₂, PEtPh₂ and PEt₂Ph), were prepared by the reactions of [Pd(olefin)L₂] with dry HCl.