Crystal structure analysis of β-tricalcium phosphate Ca3(PO4)2 by neutron powder diffraction

The crystal structure of sintered β-tricalcium phosphate, Ca₃(PO₄)₂, was refined using a high-resolution neutron powder diffraction data and the Rietveld method. This material was confirmed to have a rhombohedral structure (space group R3c, Z=21). Unit-cell parameters with higher precision (a=b=10.4352(2) Å, c=37.4029(5) Å, α=β=90°, and γ=120° in the hexagonal setting) and positional parameters for oxygen with equal precision were obtained by the neutron powder diffraction technique, compared with the single-crystal X-ray diffraction data by Dickens et al. (J. Solid State Chem. 10 (1974) 232). The site Ca(4) with atomic coordinates [0.0, 0.0, −0.0851(6)] was confirmed to be very different from the other four Ca sites: The position Ca(4) is three-fold coordinated with oxygen atoms, and has lower occupancy factor of 0.43(4), and a higher isotropic thermal parameter. On the contrary, each of the Ca(1), Ca(2), Ca(3), and Ca(5) is fully occupied by one Ca atom and these positions are coordinated with seven, eight, eight, and six oxygen atoms, respectively. The bond valence sums of Ca(4) and Ca(5) are lower (0.7) and higher (2.7), respectively, than the others (1.8-2.1).     

The role of Fe3+ on Fe2+-dependent lipid peroxidation in phospholipid liposomes

Fe2+-dependent lipid peroxidation in phosphatidylcholine (PC) liposomes, assessed by thiobarbituric acid-reactive substances (TBARS) production, was stimulated in the presence of Fe3+ in a concentration-dependent manner. The rates of nitroblue tetrazolium (NBT) reduction and Fe2+ oxidation (Fe2+ disappearance and Fe3+ formation) were also enhanced by the addition of Fe3+ to the reaction mixture, and there is a good linear relationship between these parameters. These results suggest that the facilitation of reactive oxygen species (ROS) production via Fe2+ oxidation is closely related to the onset of the stimulatory effect of Fe3+ on Fe2+-dependent lipid peroxidation. On the other hand, results using the liposomes containing various concentrations of endogenous lipid hydroperoxides (LOOH) indicated that endogenous LOOH is not directly involved in the onset of the Fe3+ stimulatory effect on Fe2+-dependent TBARS production and ROS production. This hypothesis was further confirmed by the evidence that Fe2+-dependent ROS production and Fe2+ oxidation of dipalmitoylphosphatidylcholine liposomes were also stimulated by the addition of Fe3+. The results with several antioxidants and radical scavengers suggested that ROS related to Fe2+-dependent lipid peroxidation and its stimulation by Fe3+ are ferrous-oxygen complexes rather than superoxide anion, hydrogen peroxide and hydroxyl radicals. Based on these results, we proposed a possible mechanism for the onset of the Fe3+ stimulation in Fe2+-dependent lipid peroxidation.     

Palladium on carbon-diethylamine-mediated hydrodeoxygenation of phenol derivatives under mild conditions

We have found that phenolic hydroxyl groups were readily deoxygenated via aryl sulfonate under the Pd/C-catalyzed hydrogenation conditions in the presence of diethylamine and the method could also be applicable to the hydrodeoxygenation of morphine to afford 3-deoxy-7,8-dihydromorphine. Diethylamine is not only a scavenger of the corresponding methanesulfonic acid derivative, which is produced during the reaction progress, but also a strong promoter of the Pd/C-catalyzed reduction of aryl sulfonates. This catalyst system could provide a general method for the deoxygenation of various phenol derivatives because of its mild reaction conditions, ease of handling, and no need of particular apparatus.     

Preferential Face‐on and Edge‐on Orientation of Thiophene Oligomers by Rational Molecular Design

Precise control over the supramolecular organization of organic semiconducting materials guiding to exclusive face‐on or edge‐on orientation is a challenging task. In the present work, we study the preferential packing of thiophene oligomers induced through rational molecular designing and self‐assembly. The acceptor–donor–acceptor‐type oligomers having 2‐(1,1‐dicyano‐methylene)rhodanine as acceptor ( OT1 ) favored a face‐on packing, whereas that of functionalized with N‐octyl rhodanine ( OT2 ) preferred an edge‐on packing as evident from 2D‐grazing incidence angle X‐ray diffraction, tapping‐mode atomic force microscopy (AFM) and Raman spectroscopy analyses. The oligomers exhibited anisotropic conductivity in the self‐assembled state as an outcome of the preferred orientation, revealed by the conducting AFM experiment.     

Single-cell Trapping Using Microwell Arrays Fabricated from Self-assembled Particle Monolayers

This paper proposes a self-assembly fabrication method of microwells and investigates the effect of surface treatment for the cell trapping. The target cell is unicellular cyanobacterium Synechocystis sp. strain PCC 6803, which has been widely investigated as a model organism for photosynthesis. The self-assembly monolayer of polystyrene particles (3.0 μm diameter) etched by reactive-ion etching was used as a template of polydimethylsiloxane molds. The well diameter in the mold could be controlled by the etching time. The cell-trapping efficiency was discussed with the viewpoint of hydrophilically treatment and poly-L-lysine treatment on the well arrays.     

Electrocatalytic and photocatalytic water oxidation to dioxygen based on metal complexes

The construction of an artificial photosynthetic device requires detailed understanding of the catalytic aspects of photo- or photoelectro-driven water oxidation. This has been attracting much interest as one of the promising clean energy-providing systems for the future. This review mainly covers progress on electrocatalytic and photocatalytic systems for water oxidation in the last decade. It includes conventional iridium oxide colloid catalysts and the new electrodeposited cobalt-phosphate catalyst films for water oxidation.     

Scalable free energy calculation of proteins via multiscale essential sampling

A multiscale simulation method, "multiscale essential sampling (MSES)," is proposed for calculating free energy surface of proteins in a sizable dimensional space with good scalability. In MSES, the configurational sampling of a full-dimensional model is enhanced by coupling with the accelerated dynamics of the essential degrees of freedom. Applying the Hamiltonian exchange method to MSES can remove the biasing potential from the coupling term, deriving the free energy surface of the essential degrees of freedom. The form of the coupling term ensures good scalability in the Hamiltonian exchange. As a test application, the free energy surface of the folding process of a miniprotein, chignolin, was calculated in the continuum solvent model. Results agreed with the free energy surface derived from the multicanonical simulation. Significantly improved scalability with the MSES method was clearly shown in the free energy calculation of chignolin in explicit solvent, which was achieved without increasing the number of replicas in the Hamiltonian exchange.