Proton conduction in discotic mesogens

In this communication, we show that liquid crystalline phases lower the activation energy barrier for proton transport. The liquid crystalline phases were obtained using a triphenylene core with alkyl chains bearing a triazole moiety at their termini.     

Characterization of Molecular Structures Using Topological Indices

Abstract

The characterization of molecular structure using structural invariants has increased greatly over the last ten years. Specifically, topological indices have become more widely used in the quantification of molecular structure for use in quantitative structure-activity relationship studies, chemical documentation, and molecular similarity studies. The basis, calculation, and utility of topological indices has been examined, with an eye to the specific advantages and problems in their use. In addition, variable clustering and principal component analysis are examinee as two potential solutions to the problem of index intercorrelation.     

Three dimensional structure-activity relationships (3D-QSAR) for insect repellency of diastereoisomeric compounds: a hierarchical molecular overlay approach¶

2-(2-Hydroxyethyl)-1-piperidinecarboxylic acid 1-methylpropyl ester (Picaridin), and 1-(cyclohex-3-ene-1-ylcarbonyl)-2-methylpiperidine (AI3-37220; 220) are alternatives to DEET (N,N-diethyl-3-methylbenzamide), the most popular mosquito repellent. Picaridin and AI3-37220 exhibit polychiral diastereoisomerism and each has four diastereoisomers due to the presence of two asymmetric centers in their molecules. The diastereoisomers of these compounds have differing degrees of mosquito-repellent activity according to quantitative behavioral assays conducted at the United States Department of Agriculture. An insight into the stereochemical requirements for repellency is of great importance in the development of better repellents. Molecular overlay of the optimized geometries of the diastereoisomers was considered as a novel tool for Stereochemical Structure-Activity Relationship (SSAR) modeling. An earlier study using molecular mechanics (MM2) optimized geometries showed good promise. In continuation of this effort and to overcome certain defects in using MM2 geometries, a hierarchical overlay approach was developed. In this method geometry of the low energy conformer of each diastereoisomer was optimized using: the following quantum chemical methods in a graduated manner: (a) semiempirical AM1, (b) Hartree Fock (STO3G, 3-21G, 6-31G, and 6-311G), and (c) Density Functional Theory (B3LYP/6-31G, B3LYP/6-311G). The optimized geometries of different diastereoisomers were overlaid in various user defined combinations to calculate the root mean square distances (RMSD) of the overlaid structures. The RMSD with respect to the most active diastereoisomer (220SS) were found to have a strong relationship with biological potency. Common motifs in shapes and molecular surfaces that are probably critical for effective repellent activity were identified. The hierarchical approach gave valuable information on the quantum chemical level (basis set) at which optimization must be carried out to get the correct order of repellency of the diastereoisomers of Picaridin and 220.     

Poly(ethylene oxide)-polyurethane/poly(acrylonitrile) semi-interpenetrating polymer networks for solid polymer electrolytes: vibrational spectroscopic studies in support of electrical behavior

Studies on solid polymer electrolyte systems based on semi-interpenetrating polymer networks of poly(ethylene oxide)-polyurethane and poly(acrylonitrile) (PEO-PU/PAN) doped with lithium trifluoromethanesulfonate (LiCF₃SO₃) is reported. Room temperature FT-IR analysis indicates a salt solvation process that occurs predominantly in the polyether segments of the semi-IPNs and incorporation of salt is also seen to favor a morphological change in the matrix with a transition from semi-crystalline to amorphous phase. From the relative band areas a critical concentration (C_c) of salt can be identified where concentration of ionic species, morphology and amount of transient crosslinks is optimal to impart maximum conductivity, which is in agreement with the room temperature conductivity results. Thermal analysis of the semi-IPN lends further support to this observation. The temperature dependence of conductivity is found to follow the Arrhenius behavior at low temperatures (∼ upto 328 K) and VTF dependence at higher temperatures. This crossover in temperature dependent conductivity is attributed to the change in the phase morphology of the semi-IPNs beyond the crystalline melting temperature (T_m1) of the polyether segments.     

Binding interaction of cationic phenazinium dyes with calf thymus DNA: a comparative study

Absorption, steady-state fluorescence, steady-state fluorescence anisotropy, and intrinsic and induced circular dichroism (CD) have been exploited to explore the binding of calf thymus DNA (ctDNA) with three cationic phenazinium dyes, viz., phenosafranin (PSF), safranin-T (ST), and safranin-O (SO). The absorption and fluorescence spectra of all the three dyes reflect significant modifications upon interaction with the DNA. A comparative study of the dyes with respect to modification of fluorescence and fluorescence anisotropy upon binding, effect of urea, iodide-induced fluorescence quenching, and CD measurements reveal that the dyes bind to the ctDNA principally in an intercalative fashion. The effect of ionic strength indicates that electrostatic attraction between the cationic dyes and ctDNA is also an important component of the dye-DNA interaction. Intrinsic and induced CD studies help to assess the structural effects of dyes binding to DNA and confirm the intercalative mode of binding as suggested by fluorescence and other studies. Finally it is proposed that dyes with bulkier substitutions are intercalated into the DNA to a lesser extent.     

Total Synthesis of (±)-Cuauhtemone

A total synthesis of (±)-cuauhtemone (9) was achieved by utilising the isopropylidene ketone (6) which in turn was prepared from the ketone (4).     

Modified Kolbensvedt model for the electron impact K-shell ionization cross-sections of atoms and ions

A modification of the Kolbensvedt model, MKLV, in terms of ionic, correlation (between the incident and target electrons) and relativistic corrections, is proposed to calculate the K-shell electron impact ionization cross-sections of neutral and ionic targets. The modified model, with a single set of parameters, is found to reproduce satisfactorily the experimental data for the neutral H, Al, Ar, Mn, Ge, Mo, Ag, Sn, Au, Bi and U and ionic Li⁺, B⁴⁺ and O⁷⁺ targets better than the existing empirical models from threshold energies to as high as 10⁴ MeV. For the Ag target, the calculations from MKLV follow closely the results of Scofield, and for Au, those of Scofield, and Ndefru and Malik, both done in the relativistic Born approximation with the M?ller interaction, at energies higher than the peak region.