Investigation of folding patterns in homo-oligomers of (R)-β2,2-amino acids with carbohydrate side chain

The study describes the synthesis of new β^2,2-peptides made from geminally disubstituted β^2,2-amino acid and their folding propensities. The (R)-C-linked carbo-β^2,2-amino acid [(R)-β^2,2-Caa] was prepared from d-glucose and converted into the homo-oligomeric di-, tetra-, and hexapeptides. The conformational studies were carried out using NMR (in CDCl₃), CD, IR, and MD calculations. These β^2,2-peptides were interestingly stabilized by five-membered (mr) inter-residue H-bonds NH(i)?O(i-1) (furanoside) and a 6-mr intra-residue H-bond between amide proton (NH(i)) and the oxygen of –OMe(i) at the C3 carbon of the carbohydrate side chain. These results amply demonstrate that the ‘epimerization’ at the spiro carbon center has an effect on the conformational behavior of these peptides. Finding of these, H-bonding patterns, which are not so common to stabilize the folds in this class of β^2,2-Caa derived peptides would further facilitate augmentation in the domain of foldamer.     

Carbazole-thiosemicarbazone-Hg(II) ensemble-based colorimetric and fluorescence turn-on toward iodide in aqueous media and its application in live cell imaging

A carbazole-thiosemicarbazone-Hg(2+) ensemble-based fluorogenic probe for detection of iodide in aqueous media is reported. The first fluorescent sensor for iodide anions was constructed based on the displacement approach. An 'ensemble' is able to selectively sense iodide over other anions followed by the release of 9-(butane-1-yl)-9H-carbazole-3,6-dihydrazinecarbothioamide to give a remarkable change of fluorescence turn-on signal at pH 7.4 under aqueous media. The practical use of an 'ensemble' was demonstrated by its application to the detection of iodide in the living cells.     

Photoswitchable architectural polymer: Toward azo‐based polyamidoamine side‐chain dendritic polyester

A versatile approach to the synthesis of novel polyamidoamine (PAMAM) side‐chain dendritic polyester (SCDPE) possessing azobenzene motifs in the polymeric core is described and displayed reversible cis–trans (E/Z) isomerization upon exposure to UV light. A polymerization reaction was conducted in solution using ester‐terminated PAMAM dendritic diol ( 1a , G 3.5) and azobenzene dicarboxylic acid chloride in the presence of triethylamine. PAMAM dendritic diol 1a as well as SCDPE ( 1 ) were thoroughly characterized by means of IR and NMR (¹H and ¹³C) spectroscopies. The intrinsic viscosity of 1 at 36 °C in CHCl₃ was found to be 0.38 dl/g. © 2001 John Wiley & Sons, Inc. J Polym Sci Part A: Polym Chem 39: 4182–4188, 2001     

The algebraA p((0, ∞)) and its multipliers

LetI =xεR: 0≤x≤∞ be the locally compact semigroup with addition as binary operation and the usual interval topology. The purpose of this note is to study the algebraA _p(I) of elements inL ₁(I) whose Gelfand transforms belong toL _p(Î), whereÎ denotes maximal ideal space ofL ₁(I). The multipliers ofA _p(I) have also been identified.     

Fixed-width confidence intervals for contrasts in the means

The sequential procedure developed by Bhargava and Srivastava (1973, J. Roy. Statist. Soc. Ser. B, 35, 147–152) to construct fixed-width confidence intervals for contrasts in the means is further analyzed. Second-order approximations for the first two moments of the stopping time and the coverage probability associated with the sequential procedure, are obtained. A lower bound for the number of additional observations after stopping is derived, which ensures the mxact probability of coverage. Moreover, two-stage, three-stage and modified sequential procedures are proposed for the same estimation problem. Relative advantages and disadvantages of these sampling schemes are discussed and their properties are studied.     

Chemoenzymatic Assembly of Mammalian O‐Mannose Glycans

O‐Mannose glycans account up to 30 % of total O‐glycans in the brain. Previous synthesis and functional studies have only focused on the core M3 O‐mannose glycans of α‐dystroglycan, which are a causative factor for various muscular diseases. In this study, a highly efficient chemoenzymatic strategy was developed that enabled the first collective synthesis of 63 core M1 and core M2 O‐mannose glycans. This chemoenzymatic strategy features the gram‐scale chemical synthesis of five judiciously designed core structures, and the diversity‐oriented modification of the core structures with three enzyme modules to provide 58 complex O‐mannose glycans in a linear sequence that does not exceed four steps. The binding profiles of synthetic O‐mannose glycans with a panel of lectins, antibodies, and brain proteins were also explored by using a printed O‐mannose glycan array.     

Mass spectra of sterically crowded trialkylsilyl derivatives of nucleosides

The electron impact mass spectra of tert-butyldimethylsilyl-, cyclo-tetramethylene-tert-butylsilyl and cyclo-tetramethylene-isopropylsilyl- ether derivatives of ribo- and 2′-deoxyribonucleosides are described in detail. The interpretation of fragmentation pathways of full and mixed derivatives was aided by metastable ion decomposition studies, precise mass and deuterium labelling measurements, and spectra of mixed derivatives containing the ‘passive’ (in these spectra) trimethylsilyl group. The sterically crowded silyl groups have a powerful fragmentation directing effect. Elimination of a bulky radical, R˙ (tert-butyl or isopropyl), from the molecular ion produces the siliconium ion [M? R]⁺, which is the precursor for most of the other prominent ions in the spectra. These arise from ‘siliconium ion rearrangements’ resulting from the interaction of the positively charged siliconium ion center with electron dense regions (i.e. oxygens) in the molecule, to form cyclic silyloxonium ions which subsequently decompose. Since the interacting oxygen and silicon must be sterically accessible, the fragment ion types and their abundances are very dependent upon structure. Consequently, [M? R]⁺ ions formed from 2′, 3′ or 5′-O-silyl groups give rise to different sets of daughter ions which, for the most part, are not found, or have very low abundances, in the mass spectra of underivatized or trimethylsilylated nucleosides. Detailed information on sugar and base moieties and isomeric substitution is readily obtained.     

Double even tempering of orbital exponents: Application to Roothaan-Hartree-Fock calculations for He through Xe in Slater-type basis sets

Summary Double even tempering (DET) of orbital exponents is proposed as a useful generalization of even tempering (ET). The DET scheme uses two sets of basis functions for each angular momentum. The two sets have different principal quantum numbers and their exponents are generated by two different geometric sequences. Roothaan-Hartree-Fock (RHF) calculations on the atoms from He through Xe using both ET and DET Slater-type basis sets of the same size are carried out to demonstrate the substantial improvement offered by the DET scheme. The DET scheme reduces the maximum deviation of the RHF energies relative to the Hartree-Fock limit from 1.4 to 0.3 millihartrees.     

Role of p38 mitogen-activated protein kinase and caspases in UV-B-induced apoptosis of murine peritoneal macrophages

The mechanisms of ultraviolet-B (UV-B)-induced apoptosis and the role of p38 mitogen-activated protein kinase (MAPK) were investigated in murine peritoneal macrophages. Exposure of murine peritoneal macrophages to UV-B irradiation induced rapid apoptosis concurrent with DNA fragmentation and activation of caspase-3 but did not activate caspase-1. UV-B irradiation (100 mJ/cm2) also induced expression of phospho-p38 and -c-Jun N-terminal kinase (JNK) MAPK; however, no significant expression of phospho-p42/44 was observed 120 min after exposure. Pretreatment of macrophages with a p38 MAPK inhibitor, 4-(4-fluorophenyl)-2-(4-hydroxyphenyl)-5-(4-pyridyl)-1H-imidazole (SB202190), and a caspase-3 inhibitor, N-acetyl-Asp-Glu-Val-Asp-CHO, suppressed UV-B irradiation-induced apoptosis as observed by DNA laddering and DNA fragmentation estimation quantitatively. Pretreatment with caspase-1 inhibitor, N-acetyl-Tyr-Val-Ala-Asp-CHO, had no effect. UV-B-induced caspase-3 activation resulted in the cleavage of poly-(ADP-ribose) polymerase (PARP), which was inhibited by the caspase-3 inhibitor. SB202190 pretreatment also prevented activation of caspase-3 and the cleavage of PARP. However, the caspase-3 and -1 inhibitors did not affect UV-B-induced expression of phospho-p38 and -JNK. These results suggest that activation of p38 MAPK upstream of caspases might play an important role in the apoptotic process of macrophages exposed to UV-B irradiation.