Rotational spectra of rare isotopic species of fluoroiodomethane: determination of the equilibrium structure from rotational spectroscopy and quantum-chemical calculations

Supported by accurate quantum-chemical calculations, the rotational spectra of the mono- and bi-deuterated species of fluoroiodomethane, CHDFI and CD(2)FI, as well as of the (13)C-containing species, (13)CH(2)FI, were recorded for the first time. Three different spectrometers were employed, a Fourier-transform microwave spectrometer, a millimeter/submillimter-wave spectrometer, and a THz spectrometer, thus allowing to record a huge portion of the rotational spectrum, from 5 GHz up to 1.05 THz, and to accurately determine the ground-state rotational and centrifugal-distortion constants. Sub-Doppler measurements allowed to resolve the hyperfine structure of the rotational spectrum and to determine the complete iodine quadrupole-coupling tensor as well as the diagonal elements of the iodine spin-rotation tensor. The present investigation of rare isotopic species of CH(2)FI together with the results previously obtained for the main isotopologue [C. Puzzarini, G. Cazzoli, J. C. Lo?pez, J. L. Alonso, A. Baldacci, A. Baldan, S. Stopkowicz, L. Cheng, and J. Gauss, J. Chem. Phys. 134, 174312 (2011); G. Cazzoli, A. Baldacci, A. Baldan, and C. Puzzarini, Mol. Phys. 109, 2245 (2011)] enabled us to derive a semi-experimental equilibrium structure for fluoroiodomethane by means of a least-squares fit procedure using the available experimental ground-state rotational constants together with computed vibrational corrections. Problems related to the missing isotopic substitution of fluorine and iodine were overcome thanks to the availability of an accurate theoretical equilibrium geometry (computed at the coupled-cluster singles and doubles level augmented by a perturbative treatment of triple excitations).     

Water-mediated electron transfer between protein redox centers

Recent experimental and theoretical investigations show that water molecules between or near redox partners can significantly affect their electron-transfer (ET) properties. Here we study the effects of intervening water molecules on the electron self-exchange reaction of azurin (Az), by performing a conformational sampling on the water medium and by using a newly developed ab initio method to calculate transfer integrals between molecular redox sites. We show that the insertion of water molecules at the interface between the copper active sites of Az dimers slightly increases the overall ET rate, while some favorable water conformations can considerably enhance the ET kinetics. These features are traced back to the interplay of two competing factors: the electrostatic interaction between the water and protein subsystems (mainly opposing the ET process for the water arrangements drawn from MD simulations) and the effectiveness of water in mediating ET coupling pathways. Such an interplay provides a physical basis for the found absence of correlation between the electronic couplings derived through ab initio electronic structure calculations and the related quantities obtained through the Empirical Pathways (EP) method. In fact, the latter does not account for electrostatic effects on the transfer integrals. Thus, we conclude that the water-mediated electron tunneling is not controlled by the geometry of a single physical pathway. We discuss the results in terms of the interplay between different ET pathways controlled by the conformational changes of one of the water molecules via its electrostatic influence. Finally, we examine the dynamical effects of the interfacial water and check the validity of the Condon approximation.     

Quantum and Integral (Co)Bordisms in Partial Differential Equations

Characterizations of quantum bordisms and integral bordisms in PDEs by means of subgroups of usual bordism groups are given. More precisely, it is proved that integral bordism groups can be expressed as extensions of quantum bordism groups and these last are extensions of subgroups of usual bordism groups. Furthermore, a complete cohomological characterization of integral bordism and quantum bordism is given. Applications to particular important classes of PDEs are considered. Finally, we give a complete characterization of integral and quantum singular bordisms by means of some suitable characteristic numbers. Some examples of interesting PDEs which arise in physics are also considered where existence of solutions with change of sectional topology (tunnel effect) is proved. As an application, we relate integral bordism to the spectral term that represents the space of conservation laws for PDEs. This also gives a general method to associate in a natural way a Hopf algebra to any PDE.     

A preliminary test for the application of the k0 standardization method of neutron activation analysis at the Radiochemistry and Spectroscopy Laboratory of the Istituto Nazionale di Ricerca Metrologica

Journal of Radioanalytical and Nuclear Chemistry - The application of the k0-standardization method of neutron activation analysis offers the great advantage to perform multi-elemental analyses...     

Protocell Communication through the Eyes of Synthetic Organic Chemists

The bottom-up fabrication of synthetic cells (protocells) from molecules and materials, is a major challenge of modern chemistry. A significant breakthrough has been the engineering of protocells capable of chemical communication using bio-derived molecules and ex situ stabilised cell machineries. These, however, suffer from short shelf-lives, high costs, and require mild aqueous conditions. In this Concept Article we analyse the chemistry at the heart of protocell communication to highlight new opportunities for synthetic chemists in protocell engineering. Specifically, we (i) categorise the main bio-derived chemical communication machineries in enzyme cascades, DNA strand displacement, and gene-mediated communication; (ii) review the chemistries of these signal transduction machineries; and (iii) introduce new types of bio-inspired, fully synthetic artificial enzymes to replace their natural counterparts. Developing protocells that incorporate synthetic analogues of bio-derived signal transduction machineries will improve the robustness, stability, and versatility of protocells, and broaden their applications to highly strategic fields such as photocatalysis and fine chemicals production.     

On the importance of the pore inner cavity for the ionophoric activity of 1,3-alternate calix[4]arene/steroid conjugates

1,3-Alternate calix[4]arenes, decorated with four nonpolar ‘all-trans’ tetracyclic nuclei and cation-stabilizing β-methoxyethoxy appendages, were synthesized from commercially available starting materials and through straightforward functional groups transformations/couplings. Their Na⁺-transport activities, when compared with those exerted by the known conformationally-rigidified 1,3-alternate calix[4]arene AB/cis cholic acid conjugates, suggest that the cation conductance is related to the morphology of the pendant steroids.     

Shifting Towards αVβ6 Integrin Ligands Using Novel Aminoproline-Based Cyclic Peptidomimetics

In recognition of the key role played by integrins in several life-threatening dysfunctions, the search for novel small-molecule probes that selectively recognize these surface receptors is still open and widely pursued. Inspired by previously established aminoproline (Amp)-RGD based cyclopeptidomimetics with attracting α_Vβ₃ integrin affinity and selectivity, the design and straightforward synthesis of 18 new AmpRGD chemotypes bearing additional structural variants were herein implemented, to shift toward peptide-like α_Vβ₆ integrin targeted binders. The ligand competence of the synthesized products toward α_Vβ₆ was evaluated in competitive binding assays on isolated receptors, and α_Vβ₆/α_Vβ₃ selectivity was determined for a subgroup of compounds, resulting in the identification of four very promising candidates. SAR considerations and docking simulations allowed us to appreciate the key structural features responsible for the observed activity.     

Elucidation of fatty acid profiles in vegetable oils exploiting group-type patterning and enhanced sensitivity of comprehensive two-dimensional gas chromatography

The present research is focused on the use of comprehensive 2-D GC (GCxGC) for the thorough elucidation of fatty acid (FA) profiles contained in vegetable oils; the samples analysed consisted of extra-virgin olive oil and refined hazelnut oil. The enhanced sensitivity and the formation of group-type patterns provided by GCxGC enabled the identification and quantification of both well-known and rather unexpected FAs contained in the lipid matrices. Peak assignment was, in most cases, supported by using pure standard compounds. Of particular interest was the identification of a series of odd-numbered FAs in both samples. The results attained to demonstrate the usefulness of GCxGC also for the analysis of supposedly low-complex samples.     

Development and rheological investigation of novel alginate/N‐succinylchitosan hydrogels

In the present article alginate hydrogels and novel hydrogels based on blends of alginate/N‐succinylchitosan have been realized in water solution at neutral conditions. The gels have been obtained by crosslinking via the internal setting method using calcium carbonate (CaCO₃) as calcium ions source. A rheological investigation of both the plain alginate and the alginate/N‐succinylchitosan blend hydrogels has been performed by means of oscillatory dynamic measurements. The effect of the inclusion of different amounts of CaCO₃ on the critical deformation (γ_c) characterizing the limit of the linear viscoelastic regime has been studied for the plain alginate gels. The frequency response in small amplitude oscillatory experiments of the plain alginate gels has been investigated in terms of the storage (G′) and loss (G″) modulus behavior. The dynamic data have been interpreted in terms of the Friedrich and Heymann model. The inclusion of the N‐succinylchitosan, in the range 10–50% w/w, had no effect on the γ_c values. On the contrary, when the 10% w/w of the N‐succinylchitosan is added to the plain alginate gels, a significant increase in the storage modulus values is recorded for all the systems analyzed. The gelation kinetics has been investigated and the results indicate that the kinetics process can be accelerated increasing the percentage of Ca⁺² ions and/or including the N‐succinylchitosan in the plain alginate systems. Finally, the morphological analysis of scaffolds obtained from the hydrogels through freeze‐drying revealed an interconnected porous structure. © 2008 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 46: 1167–1182, 2008