Fluorescence anisotropy and FRET studies of G-quadruplex formation in presence of different cations

Results of the steady-state fluorescence, anisotropy and FRET measurements of G-quadruplex formation in the presence of selected cations (Li(+), Na(+), K(+), NEt(4)(+) and Mg(2+)) are reported. Three different fluorescent oligonucleotides with human telomeric sequence labeled with fluorescein (FAM) and tetramethylrhodamine (TAMRA) were investigated: a dual-labeled 21-mer denoted as PSO (Potassium Sensing Oligonucleotide) and two 5'- and 3'- single-labeled probes, FAM-21 and 21-TAMRA, respectively. The fluorescence signal of FAM-21 increased significantly for all systems and the fluorescence enhancement was comparable in magnitude for monovalent cations but it was more pronounced for Mg(2+) cation. This phenomenon was attributed to the protolytic equilibria of FAM affected by the variation in ionic strength. On the other hand, fluorescence of TAMRA was enhanced selectively by Na(I) cation that was explained by the dequenching of TAMRA emission originated from the peculiarity of the basket-type structure of Na(I)-quadruplex. Anisotropy of FAM-21 (but not 21-TAMRA) appeared to be sensitive to the G-quadruplex formation, showing significant increase with an increase in cation concentration and indicating some restrictions in rotational depolarization of FAM. FRET experiments revealed that all tested cations caused quenching of FAM fluorescence in PSO, but only Na(+) and K(+) ions produced sensitized emission of TAMRA acceptor. Higher FRET efficiency observed in the presence of sodium ion was attributed to the specific spectral factor and steric interactions in the basket-type Na(I)-quadruplex.     

Experimental study on stability of different solid contact arrangements of ion-selective electrodes

Comparison of potentials stability of different types of solid contact lead selective electrodes is presented. Conducting polymer based sensors (hydrophilic and conducting - poly(3,4-ethylenedioxythiophene) or hydrophobic and semiconducting-polyoctylthiophene) were studied in parallel with coated wire and hydrogel (poly(hydroxyethylmethacrylate)) contact electrodes. The within day and between days potential stability was compared, highlighting the effect of sensor storing conditions. The obtained results clearly demonstrate that different conclusions on stability of sensors’ potential can be drawn depending on experimental protocol applied. Polyoctylthiophene based contacts show superior within day stability with no influence of dry storage. On the other hand, a chronopotentiometric method of stability evaluation clearly prefers poly(3,4-ethylenedioxythiophene) based sensors, pointing to smallest resistance and polarizability. It is clearly shown that the choice of experimental conditions applied to test stability can favor particular type of contact used.The inductively coupled plasma mass spectrometry with laser ablation (LA-ICP-MS) experiments conducted for different arrangements tested has shown that for poly(3,4-ethylenedioxythiophene) and poly(hydroxyethylmethacrylate) type contacts longer contact time with lead(II) solution results in changes in the elemental composition of the transducer layer. On the other hand, in line with high stability observed under potentiometric conditions, no changes were seen for polyoctylthiophene based transducer.     

Silver and lead all-plastic sensors—polyaniline vs. poly(3,4-ethyledioxythiophene) solid contact

Silver and lead selective all-plastic ion-selective electrodes were obtained using poly(vinyl chloride)-based membranes and either poly(3,4-ethylenedioxythiophene) or polyaniline dispersion cast on an insulating plastic support as transducer and electrical lead. The effect of interactions of applied conducting polymer with analyte ions on potentiometric responses was evaluated and correlated with changes in elemental composition and element distribution within the ion-selective membrane and the conducting polymer transducer revealed in course of laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) experiments. In the case of silver selective electrodes, potentiometric responses obtained are much dependent on the oxidation state of the polymer placed beneath the ion-selective membrane. For semi-oxidized polymer (poly(3,4-ethylenedioxythiophene)-based electrodes, linear responses with detection limit equal to 10^−5.4 M were obtained. For a more oxidized polyaniline (of higher conductivity), although the electrodes were pretreated exactly in the same way and tested in parallel, super Nernstian potential slope was recorded within the AgNO₃ activities range form 10⁻⁶ to 10⁻⁷ M. These responses were consistent with results of LA-ICP-MS, revealing profoundly higher silver signals intensities for poly(3,4-ethylenedioxythiophene) underlying silver selective membrane. It seems highly probable that silver is accumulated in this polymer layer as Ag⁰ due to spontaneous redox reaction leading to oxidation of the polymer; however, this process requires also the presence of silver ions at the interface. In fact, when reduced (deprotonated) polyaniline was used as transducer, the potentiometric responses of the sensor were, within the range of experimental error, the same as obtained for poly(3,4-ethylenedioxythiophene)-based sensor. On the other hand, for lead(II) selective sensors, the difference in responses of electrodes prepared using poly(3,4-ethylenedioxythiophene) or polyaniline was less pronounced, which is in accordance with the elemental composition of these sensors.     

PAMAM Dendrimers as Potential Agents against Fibrillation of α‐Synuclein,a Parkinson's Disease‐Related Protein

The effect of PAMAM dendrimers (generations G3, G4 and G5) on the fibrillation of α‐synuclein was examined by fluorescence and CD spectroscopy, TEM and SANS. PAMAM dendrimers inhibited fibrillation of α‐synuclein and this effect increased both with generation number and PAMAM concentration. SANS showed structural changes in the formed aggregates of α‐synuclein – from cylindrical to dense three‐dimensional ones – as the PAMAM concentration increased, on account of the inhibitory effect. PAMAM also effectively promoted the breaking down of pre‐existing fibrils of α‐synuclein. In both processes – that is, inhibition and disassociation of fibrils – PAMAM redirected α‐synuclein to an amorphous aggregation pathway.

     

Modulation of the MOP Receptor (μ Opioid Receptor) by Imidazo[1,2-a]imidazole-5,6-Diones: In Search of the Elucidation of the Mechanism of Action

The μ-opioid receptors belong to the family of G protein-coupled receptors (GPCRs), and their activation triggers a cascade of intracellular relays with the final effect of analgesia. Classical agonists of this receptor, such as morphine, are the main targets in the treatment of both acute and chronic pain. However, the dangerous side effects, such as respiratory depression or addiction, significantly limit their widespread use. The allosteric centers of the receptors exhibit large structural diversity within particular types and even subtypes. Currently, a considerable interest is aroused by the modulation of μ-opioid receptors. The application of such a technique may result in a reduction in the dose or even discontinuation of classical opiates, thus eliminating the side effects typical of this class of drugs. Our aim is to obtain a series of 1-aryl-5,6(1H)dioxo-2,3-dihydroimidazo[1,2-a]imidazole derivatives and provide more information about their activity and selectivity on OP3 (MOP, human mu opioid receptor). The study was based on an observation that some carbonyl derivatives of 1-aryl-2-aminoimidazoline cooperate strongly with morphine or DAMGO in sub-threshold doses, producing similar results to those of normal active doses. To elucidate the possible mechanism of such enhancement, we performed a few in vitro functional tests (involving cAMP and β-arrestin recruitment) and a radioligand binding assay on CHO-K1 cells with the expression of the OP3 receptor. One of the compounds had no orthosteric affinity or intrinsic activity, but inhibited the efficiency of DAMGO. These results allow to conclude that this compound is a negative allosteric modulator (NAM) of the human μ-opioid receptor.     

Nanofibers as optical sensors for model VOCs dispersed in aqueous phase

Nanofibers mats, prepared from poly(vinyl chloride) (PVC) containing dispersed dye Nile red (NR) were applied in a proof of concept study as optical sensors for Volatile Organic Compounds (VOCs) dispersed in an aqueous phase. Benefiting from the solubility of the dye, and in some cases, also of the polymer in model solvents belonging to the group of VOCs, an increase of emission was observed for increasing solvent concentration in the sample. The optical signal formation was observed regardless if only the dye or both dye and PVC were soluble in the tested solvent. In both cases, high sensitivity emission increases for increasing VOCs present in the aqueous phase were observed within the range of concentration of model analytes: from 200 ppm of m-xylene or from 300 ppm of styrene, to up to ca 1500 ppm. The obtained higher detection limit was lower compared to films of PVC containing the dye due to the lower availability of the material to be dissolved by analyte – solvent. The large surface area of nanofibers was useful in the detection, leading to higher signal changes compared to films.