Mechanisms of fibrinogen adsorption at solid substrates

Adsorption of fibrinogen, modeled as a linear chain of touching beads of various sizes, was theoretically studied using the random sequential adsorption (RSA) model. The adsorption process was assumed to consist of two steps: (i) formation of an irreversibly bound fibrinogen monolayer under the side-on orientation, which is independent of the bulk protein concentration and (ii) formation of the reversibly bound, end-on monolayer, whose coverage was dependent on the bulk concentration. Calculation based on the RSA model showed that the maximum surface concentration of the end-on (reversible) monolayer equals N(⊥∞) = 6.13 × 10(3) μm(-2) which is much larger than the previously found value for the side-on (irreversible) monolayer, equal to N(∞) = 2.27 × 10(3) μm(-2). Hence, the maximum surface concentration of fibrinogen in both orientations is determined to be 8.40 × 10(3) μm(-2) corresponding to the protein coverage of 5.70 mg m(-2) assuming 20% hydration. Additionally, the surface blocking function (ASF) was determined for the end-on fibrinogen adsorption, approximated for the entire range of coverage by the interpolating polynomial. For the coverage approaching the jamming limit, the surface blocking function (ASF) was shown to vanish proportionally to (θ(⊥∞) - θ(⊥))(2). These calculation allowed one to theoretically predict adsorption isotherms for the end-on regime of fibrinogen and adsorption kinetics under various transport conditions (diffusion and convection). Using these theoretical results, a quantitative interpretation of experimental data obtained by TIRF and ellipsometry was successfully performed. The equilibrium adsorption constant for the end-on adsorption regime was found to be 8.04 × 10(-3) m. On the basis of this value, the depth of the adsorption energy minimum, equal to -17.4 kT, was predicted, which corresponds to ΔG = -41.8 kJ mol(-1). This is in accordance with adsorption energy derived as the sum of the van der Waals and electrostatic interactions. Besides having significance for predicting fibrinogen adsorption, theoretical results derived in this work also have implications for basic science providing information on mechanisms of anisotropic protein molecule adsorption on heterogeneous surfaces.     

Hydrogenated amorphous silicon nanostructures: novel structure�Creactivity relationships for cyclization and ring opening in the gas phase

The effects of the reactive center connectivity and internal rotations on the reactivity of hydrogenated silicon nanostructures toward cyclization and ring opening pathways have been investigated. Rate coefficients for 25 cyclization and ring opening reactions for hydrides containing up to eight silicon atoms have been calculated using G3//B3LYP. The overall reactions exhibit two elementary steps. Overcoming the first barrier results in the formation of a hydrogen-bridged cyclic intermediate from a substituted silylene. Passing over the second barrier converts this intermediate into a cyclic silicon hydride. The rate-determining step varied according to the ring size formed and the temperature. Assuming a rate-determining step, values for the single-event Arrhenius pre-exponential factor, $ \tilde{A}$ , and the activation energy, E _a, were calculated from G3//B3LYP rate coefficients corrected for internal rotations, and a group additivity scheme was developed to predict $ \tilde{A}$ and E _a. The values predicted by group additivity are more accurate than structure?Creactivity relationships currently used in the literature, which rely on a representative $ \tilde{A}$ value for each reaction class and the Evans-Polanyi correlation to predict E _a. Internal rotation corrections played a prominent role in cyclization pathways, impacting $ \tilde{A}$ values for larger ring formation reactions more strongly than any variations in the connectivity of the reactive center.     

Microwave assisted sulfopropylation of N-heterocycles using 1,3-propane sultone

Dramatic rate acceleration was observed for N-sulfopropylation of heterocyclic compounds (1a-h) using 1,3-propane sultone(2) under microwave irradiation affording the N-sulfopropylated compounds (3a-h) in 68–95% yield.     

Phase Composition of Iron Compounds in the Products of Annealing of the Tertiary Basaltic Rock from Góra Obłoga (the Lower Silesia, Poland)

The work presents results of the research on thermal transformations of iron minerals which are present in basalt rock from Góra Obłoga in Pogórze Złotoryjskie District. The rock under study shows microporphyric texture and compact microstructure and contained: olivine, augite, diopside, plagioclases, serpentines, zeolites, apatite and also opaque minerals (oxides). The basalt was annealing within the temperature range between 573–1473 K, in air, and then, microscopic observations, X-ray diffraction as well as Mössbauer spectroscopy measurements were performed. During the heat treatment of the rock it was found that the content of olivine and augite was gradually decreasing due to progressive oxidation of iron compounds, resulting in formation of magnetite and hematite. The comparison of the results of thermal Mössbauer spectral analysis showed that transformation of iron minerals occurred already under conditions when the basic rock mass underwent only insignificant changes.     

A stereoselective synthesis of 1,2-diols from α-hydroxyaldehydes

The addition of lithium acetylides to (20R)-20-hydroxypregnane-22-carboxaldehydes in the absence and in the presence of BF₃ afforded predominantly 20R,22R- or 20R,22s-diols, respectively, characteristic of ecdysones.     

Structure of poly(acrylic acid) in electrolyte solutions determined from simulations and viscosity measurements

In this work, the structure of poly(acrylic acid) (PAA) molecules in electrolyte solutions obtained from molecular dynamic simulations was compared with experimental data derived from dynamic light scattering (PCS), dynamic viscosity, and electrophoretic measurements. Simulations and measurements were carried out for polymer having a molecular weight of 12 kD for various ionic strengths of the supporting electrolyte (NaCl). The effect of the ionization degree of the polymer, regulated by the change in the pH of the solution in the range 4-9 units, was also studied systematically. It was predicted from theoretical simulations that, for low electrolyte concentration (10(-3) M) and pH = 9 (full nominal ionization of PAA), the molecule assumed the shape of a flexible rod having the effective length L(ef) = 21 nm, compared to the contour length L(ext) = 41 nm predicted for a fully extended polymer chain. For an electrolyte concentration of 0.15 M, it was predicted that L(ef) = 10.5 nm. For a lower ionization degree, a significant folding of the molecule was predicted, which assumed the shape of a sphere having the radius of 2 nm. These theoretical predictions were compared with PCS experimental measurements of the diffusion coefficient of the molecule, which allowed one to calculate its hydrodynamic radius R(H). It was found that R(H) varied between 6.6 nm for low ionic strength (pH = 9) and 5.8 nm for higher ionic strength (pH = 4). The R(H) values for pH = 9 were in a good agreement with theoretical predictions of particle shape, approximated by prolate spheroids, bent to various forms. On the other hand, a significant deviation from the theoretical shape predictions occurring at pH = 4 was interpreted in terms of the chain hydration effect neglected in simulations. To obtain additional shape information, the dynamic viscosity of polyelectrolyte solutions was measured using a capillary viscometer. It was found that, after considering the correction for hydration, the experimental results were in a good agreement with the Brenner's viscosity theory for prolate spheroid suspensions. The effective lengths derived from viscosity measurements using this theory were in good agreement with values predicted from the molecular dynamic simulations.     

A simple model of stiff and flexible polymer chain adsorption: the influence of the internal chain architecture

In this study, we investigated the process of random sequential adsorption of stiff and flexible polymer chains on a two-dimensional square lattice. The polymer chains were represented by sequence of lattice points forming needles, T shapes, and crosses as well as flexible linear chains and star-branched chains consisted of three and four arms. The Monte Carlo method was employed to generate the model systems. The percolation threshold and the jamming threshold were determined for all systems under consideration. The influence of the chain length and the chain architecture on both thresholds was calculated and discussed. The changes in the ordering of the system were also studied.     

Polyelectrolyte adsorption layers studied by streaming potential and particle deposition

Adsorption of a cationic polyelectrolyte, polyallylamine hydrochloride (PAH), having a molecular weight of 70,000 on mica was characterized by the streaming potential method and by deposition of negative polystyrene latex particles. Formation of PAH layers was followed by determining the apparent zeta potential of surface zeta as function of bulk PAH concentration. The zeta potential was calculated from the streaming potential measured in the parallel-plate channel formed by two mica plates precovered by the polyelectrolyte. The experimental data were expressed as the dependence of the reduced zeta potential zeta/zeta0 on the PAH coverage Theta(PAH), calculated using the convective diffusion theory. It was found that for the ionic strength of 10(-2) M, the dependence of zeta/zeta0 on Theta(PAH) can be reflected by the theoretical model formulated previously for surfaces covered by colloid particles. The electrokinetic measurements were complemented by particle deposition experiments on PAH-covered mica surfaces. A direct correlation between the polymer coverage and the initial deposition rate of particles, as well as the jamming coverage, was found. For ThetaPAH > 0.3 the initial deposition rate attained the value predicted from the convective diffusion theory for homogeneous surfaces. The initial deposition rates for surfaces modified by PAH were compared with previous experimental and theoretical results obtained for heterogeneous surfaces formed by preadsorption of colloid particles. It was revealed that negative latex deposition occurred at surfaces exhibiting negative apparent zeta potential, which explained the anomalous deposition of particles observed in previous works. It was suggested that the combined electrokinetic and particle deposition methods can be used for detecting adsorbed polyelectrolytes at surfaces for coverage range of a percent. This enables one to measure bulk polyelectrolyte concentrations at the level of 0.05 ppm.     

Modeling of particle transport and combustion phenomena in a large-scale circulating fluidized bed boiler using a hybrid Euler-Lagrange approach

The constantly developing fiuidized combustion technology has become competitive with a conventional pulverized coal （PC） combustion. Circulating fluidized bed （CFB） boilers can be a good alternative to PC boilers due to their robustness and lower sensitivity to the fuel quality. However, appropriate engineering tools that can be used to model and optimize the construction and operating parameters of a CFB boiler still require development. This paper presents the application of a relatively novel hybrid Euler-Lagrange approach to model the dense gas-solid flow combined with a combustion process in a large-scale indus- trial CFB boiler. In this work, this complex flow has been resolved by applying the ANSYS FLUENT 14.0 commercial computational fluid dynamics （CFD） code. To accurately resolve the multiphase flow, the original CFD code has been extended by additional user-defined functions. These functions were used to control the boiler mass load, particle recirculation process （simplified boiler geometry）, and interphase hydrodynamic properties. This work was split into two parts. In the first part, which is referred to as pseudo combustion, the combustion process was not directly simulated. Instead, the effect of the chemi- cal reactions was simulated by modifying the density of the continuous phase so that it corresponded to the mean temperature and composition of the flue gases, In this stage, the particle transport was simu- lated using the standard Euler-Euler and novel hybrid Euler-Lagrange approaches, The obtained results were compared against measured data, and both models were compared to each other. In the second part, the numerical model was enhanced by including the chemistry and physics of combustion. To the best of the authors＇ knowledge, the use of the hybrid Euler-Lagrange approach to model combustion is a new engineering application of this model, In this work, the combustion process was modeled for air-fuel combustion. The simulation results were compared with experimental data.