Synthetic Activators of Cell Migration Designed by Constructive Machine Learning

Constructive machine learning aims to create examples from its learned domain which are likely to exhibit similar properties. Here, a recurrent neural network was trained with the chemical structures of known cell-migration modulators. This machine learning model was used to generate new molecules that mimic the training compounds. Two top-scoring designs were synthesized, and tested for functional activity in a phenotypic spheroid cell migration assay. These computationally generated small molecules significantly increased the migration of medulloblastoma cells. The results further corroborate the applicability of constructive machine learning to the de novo design of druglike molecules with desired properties.     

Synthese und Metallierung des Diaminosiloxans O(SiiPr2NH2)2

Synthesis and Metalation of the Diaminosiloxane O(SiiPr₂NH₂)₂ The 1,3‐diaminoldisiloxane O(SiiPr₂NH₂)₂ ( 1 ) was obtained from the reaction of O(SiiPr₂Cl)₂ with NH₃. The reactions of 1 with AlEt₃ or GaEt₃ produced the compounds [O{SiiPr₂N(H)MEt₂}{SiiPr₂NMEt}]₂ ( 2 : M = Al; 3 : M = Ga). The crystal structures of 2 and 3 were determined by single crystal X‐ray diffraction, showing a polycyclic M₄N₄Si₄O₂ core structure of these molecules.     

Poly(acrylate‐b‐styrene‐b‐isobutylene‐b‐styrene‐b‐acrylate) Block Copolymers via Carbocationic and Atom Transfer Radical Polymerizations

A series of polyacrylate‐polystyrene‐polyisobutylene‐polystyrene‐polyacrylate (X‐PS‐PIB‐PS‐X) pentablock terpolymers (X=poly(methyl acrylate) (PMA), poly(butyl acrylate) (PBA), or poly(methyl methacrylate) (PMMA)) was prepared from poly (styrene‐b‐isobutylene‐b‐styrene) (PS‐PIB‐PS) block copolymers (BCPs) using either a Cu(I)Cl/1,1,4,7,7‐pentamethyldiethylenetriamine (PMDETA) or Cu(I)Cl/tris[2‐(dimethylamino)ethyl]amine (Me₆TREN) catalyst system. The PS‐PIB‐PS BCPs were prepared by quasiliving carbocationic polymerization of isobutylene using a difunctional initiator, followed by the sequential addition of styrene, and were used as macroinitiators for the atom transfer radical polymerization (ATRP) of methyl acrylate (MA), n‐butyl acrylate (BA), or methyl methacrylate (MMA). The ATRP of MA and BA proceeded in a controlled fashion using either a Cu(I)Cl/PMDETA or Cu(I)Cl/Me₆TREN catalyst system, as evidenced by a linear increase in molecular weight with conversion and low PDIs. The polymerization of MMA was less controlled. ¹H‐NMR spectroscopy was used to elucidate pentablock copolymer structure and composition. The thermal stabilities of the pentablock copolymers were slightly less than the PS‐PIB‐PS macroinitiators due to the presence of polyacrylate or polymethacrylate outer block segments. DSC analysis of the pentablock copolymers showed a plurality of glass transition temperatures, indicating a phase separated material.     

New Rare‐Earth Metal Germanides RE2Ge9 (RE = Nd,Sm) by Thermal Decomposition of High‐Pressure Phases REGe5

The rare‐earth metal germanides RE₂Ge₉ (RE = Nd, Sm) have been prepared by thermal decomposition of the metastable high‐pressure phases REGe₅ at ambient pressure. The compounds adopt an orthorhombic unit cell with a = 396.34(4) pm; b = 954.05(8) pm and c = 1238.4(1) pm for Nd₂Ge₉ and a = 395.46(7) pm; b = 946.4(2) pm and c = 1232.1(3) pm for Sm₂Ge₉. Crystal structure refinements reveal space group Pmmn (No. 59) for Nd₂Ge₉. The atomic pattern resembles an ordered defect variety of the pentagermanide motif REGe₅ (RE = La; Nd, Sm, Gd, Tb) comprising corrugated germanium layers. These condense into a three‐dimensional network interconnected by eight‐coordinated germanium atoms. The resulting framework channels along [100] enclose the neodymium atoms. With respect to the atomic arrangement of the pentagermanides, half of the interlayer germanium atoms are eliminated in an ordered way so that occupied and empty germanium columns alternate along [001]. The rare‐earth metal atoms of both types of compounds, REGe₅ and RE₂Ge₉, exhibit the electronic states 4f ³ and 4f ⁵ (oxidation state +3) for neodymium and samarium, respectively, evidencing that the modification of the germanium network leaves the electron configuration of the metal atoms unaffected.     

Electrochemiluminescence Bioassays with a Water‐Soluble Luminol Derivative Can Outperform Fluorescence Assays

The most efficient and commonly used electrochemiluminescence (ECL) emitters are luminol, [Ru(bpy)₃]²⁺, and derivatives thereof. Luminol stands out due to its low excitation potential, but applications are limited by its insolubility under physiological conditions. The water‐soluble m‐carboxy luminol was synthesized in 15 % yield and exhibited high solubility under physiological conditions and afforded a four‐fold ECL signal increase (vs. luminol). Entrapment in DNA‐tagged liposomes enabled a DNA assay with a detection limit of 3.2 pmol L^?1, which is 150 times lower than the corresponding fluorescence approach. This remarkable sensitivity gain and the low excitation potential establish m‐carboxy luminol as a superior ECL probe with direct relevance to chemiluminescence and enzymatic bioanalytical approaches.     

Combined computational and experimental study of substituent effects on the thermodynamics of H(2), CO,arene, and alkane addition to iridium

The thermodynamics of small-molecule (H(2), arene, alkane, and CO) addition to pincer-ligated iridium complexes of several different configurations (three-coordinate d(8), four-coordinate d(8), and five-coordinate d(6)) have been investigated by computational and experimental means. The substituent para to the iridium (Y) has been varied in complexes containing the (Y-PCP)Ir unit (Y-PCP = eta(3)-1,3,5-C(6)H(2)[CH(2)PR(2)](2)Y; R = methyl for computations; R = tert-butyl for experiments); substituent effects have been studied for the addition of H(2), C-H, and CO to the complexes (Y-PCP)Ir, (Y-PCP)Ir(CO), and (Y-PCP)Ir(H)(2). Para substituents on arenes undergoing C-H bond addition to (PCP)Ir or to (PCP)Ir(CO) have also been varied computationally and experimentally. In general, increasing electron donation by the substituent Y in the 16-electron complexes, (Y-PCP)Ir(CO) or (Y-PCP)Ir(H)(2), disfavors addition of H-H or C-H bonds, in contradiction to the idea of such additions being oxidative. Addition of CO to the same 16-electron complexes is also disfavored by increased electron donation from Y. By contrast, addition of H-H and C-H bonds or CO to the three-coordinate parent species (Y-PCP)Ir is favored by increased electron donation. In general, the effects of varying Y are markedly similar for H(2), C-H, and CO addition. The trends can be fully rationalized in terms of simple molecular orbital interactions but not in terms of concepts related to oxidation, such as charge-transfer or electronegativity differences.     

Highly effective pincer-ligated iridium catalysts for alkane dehydrogenation. DFT calculations of relevant thermodynamic, kinetic, and spectroscopic properties

The p-methoxy-substituted pincer-ligated iridium complexes, (MeO-(tBu)PCP)IrH(4) ((R)PCP = kappa(3)-C(6)H(3)-2,6-(CH(2)PR(2))(2)) and (MeO-(iPr)PCP)IrH(4), are found to be highly effective catalysts for the dehydrogenation of alkanes (both with and without the use of sacrificial hydrogen acceptors). These complexes offer an interesting comparison with the recently reported bis-phosphinite "POCOP" ((R)POCOP = kappa(3)-C(6)H(3)-2,6-(OPR(2))(2)) pincer-ligated catalysts, which also show catalytic activity higher than unsubstituted PCP analogues (Gottker-Schnetmann, I.; White, P.; Brookhart, M. J. Am. Chem. Soc. 2004, 126, 1804). On the basis of nu(CO) values of the respective CO adducts, the MeO-PCP complexes appear to be more electron-rich than the parent PCP complexes, whereas the POCOP complexes appear to be more electron-poor. However, the MeO-PCP and POCOP ligands are calculated (DFT) to show effects in the same directions, relative to the parent PCP ligand, for the kinetics and thermodynamics of a broad range of reactions including the addition of C-H and H-H bonds and CO. In general, both ligands favor (relative to unsubstituted PCP) addition to the 14e (pincer)Ir fragments but disfavor addition to the 16e complexes (pincer)IrH(2) or (pincer)Ir(CO). These kinetic and thermodynamic effects are all largely attributable to the same electronic feature: O --> C(aryl) pi-donation, from the methoxy or phosphinito groups of the respective ligands. DFT calculations also indicate that the kinetics (but not the thermodynamics) of C-H addition to (pincer)Ir are favored by sigma-withdrawal from the phosphorus atoms. The high nu(CO) value of (POCOP)Ir(CO) is attributable to electrostatic effects, rather than decreased Ir-CO pi-donation or increased OC-Ir sigma-donation.     

Preparation,Crystal Structures,and Thermal Studies of Alkaline Earth Nitrocarboxylates

The preparation, crystal structures, and thermal properties of [Ca(pyr)₂(4‐nba)₂]_n ( 1 ) (pyr = pyrazole; 4‐nba = 4‐nitrobenzoate) {[Ca(H₂O)₂(3‐npth)] · H₂O}_n ( 2 ) (3‐npth = 3‐nitrophthalate), [Mg(H₂O)₅(3‐npth)] · 2H₂O ( 3 ), and [Mg(H₂O)₄(2‐nba)₂] ( 4 ) (2‐nba = 2‐nitrobenzoate) are reported. The anhydrous Ca^II compound 1 and the diaqua Ca^II‐3‐nitrophthalate monohydrate 2 are one‐dimensional coordination polymers containing a hexacoordinate Ca^II ion located on a center of inversion in 1 and a heptacoordinated Ca^II ion in 2 . In 1 , the 4‐nitrobenzoate moiety acts as a μ₂‐bridging bidentate ligand, whereas the 3‐nitrophthalate anion exhibits a μ₃‐bridging pentadentate coordination mode in 2 . The hexacoordinate Mg^II‐containing compounds 3 and 4 do not contain a [Mg(H₂O)₆]²⁺ unit and the central Mg^II ion is coordinated to at least one monodentate carboxylate unit namely the monodentate 3‐npth molecule in 3 and two trans monodentate 2‐nba molecules in 4 . Hydrogen bonding between the lattice water molecules results in the formation of a water dimer in 3 . A comparative study of 17 alkaline earth nitrocarboxylates is described.