Directed evolution of protease beacons that enable sensitive detection of endogenous MT1-MMP activity in tumor cell lines

Directed evolution was applied to identify peptide substrates with enhanced hydrolysis rates by MT1-MMP suitable for protease beacon development. Screening of a random pentapeptide library, using two-color CLiPS, yielded several substrates identical to motifs in distinct collagens that shared the consensus sequence P-x-G↓L. To identify substrates with enhanced cleavage rates, a second-generation decapeptide library incorporating the consensus was screened under stringent conditions, which resulted in a MxPLG↓(M)/(L)M(G)/(A)R consensus motif. These substrates are hydrolyzed by human-MT1-MMP up to six times faster than reported peptide substrates and are stable in plasma. Finally, incubation of soluble protease beacons incorporating the optimized substrates, but not previous substrates, enabled direct detection of endogenous MT1-MMP activity of human-fibrosarcoma (HT-1080) cells. Extended substrate libraries coupled with CLiPS should be useful to generate more effective activity probes for a variety of proteolytic enzymes.     

Graphite/Methanesulfonic Acid (GMA) as a New Reagent for Sulfonylation of Phenols and Thia‐Fries Rearrangement of Aryl Sulfonates to Sulfonylphenols

A new facile method for direct sulfonylation of phenols was developed. Graphite in methanesulfonic acid (GMA) was used to prepare sulfonylphenols by sulfonylation of phenol and naphthalene derivatives with p‐toluenesulfonic acid (=4‐methylbenzenesulfonic acid) (Table 1) and the thia‐Fries rearrangement of aryl sulfonates (Table 4). Mechanistic studies showed that the sulfonylation reaction of phenols in GMA occurred through an initial sulfonate formation followed by a thia‐Fries rearrangement of the aryl sulfonate by an intermolecular mechanism (Scheme 3).     

Three Rings Schiff Base Ester Liquid Crystals: Experimental and Computational Approaches of Mesogenic Core Orientation Effect,Heterocycle Impact

Three rings 2-hydroxypyridine liquid crystalline compounds have been prepared and fully characterized. The mesomorphic behavior of the prepared compounds has been investigated in terms of differential scanning calorimetry (DSC) and polarized optical microscopy (POM). Moreover, a comparative study between the prepared compounds and previously reported analogs has been discussed in terms of the orientation and position of the mesogenic core, in addition to the direction of the terminal alkyl chains. Furthermore, a detailed computational approach has been studied to illustrate the effect of geometrical and dimensional parameters on the type of the enhanced texture and the mesomorphic range and stability. The results of the DFT study revealed that the orientation of the mesogen could affect the mesomorphic behavior and this has been attributed in terms of the degree of the polarizability of the linking groups. This result has been confirmed by calculation of the net dipole moment and the molecular electrostatic potential that show how the mesogen orientation and position could impact the molecular charge separation. Finally, the effect of the pyridyl group has been also investigated in terms of the calculated aromaticity index and the π-π stacking.     

Novel application of quantum chemical investigation in terms of substituent parameters: Statistical comparison of dual and single substituent parameter treatments

The correlation analysis of Mulliken charge (Q_M) calculated by using density functional theory (B3LYP/STO-3G) calculations of 1-(4-azido-5-hydroxymethyl-tetrahydro-selenophen-2-ylmethyl)-5-substituted-1H-pyrimidine-2,4-dione, were done by using mono substituent parameter (Hammett’s model), and dual substituent parameter (Taft’s, Reynolds’, and Swain’s models). The dual substituent parameter correlations of the Q_M data gave no significant improvement over single parameter correlations, the best correlation observed with the Taft’s Model as compared with the Swain’s and Reynolds’ Models, respectively. The correlation analysis of Mulliken charge can be used successfully to demonstrate the existence or absence of the interaction between the oxygen of the carbonyl group and selenium atom.     

Flow injection-based cloud point extraction of phosalone and ethion in seawater of Chabahar Bay and determination by high-performance liquid chromatography: study of use of carbon nanotube and nanofibers as a column filler in flow system

This study presents an easy and cost-effective flow-based cloud point extraction (CPE) method for determining partial amounts of two organophosphorus pesticides (phosalone and ethion) in seawater by HPLC–UV–Vis. In continues CPE methodology, the effect of the different column packing type such as carbon nanotube, polyacrylonitrile nanofiber and fiberglass on pesticide extraction was investigated. The Triton X-100 was utilized as nonionic surfactant, and moreover, effect of different parameters such as pH, temperature, extraction time, surfactant concentration, type and volume of the eluent solution on the extraction efficiency was optimized. Under optimum conditions, the figures of merit of the method for phosalone and ethion were obtained as: the enrichment factor (172 and 166), line range (0.8–300 and 0.5–300 µg L^?1, R ² = 0.9973 and 0.9982), relative standard deviation in concentration of 200 µg L^?1 (%RSD = %5.4 and %7.99, N = 5) and limit of detection (LOD = 0.24 and 0.14 µg L^?1). The suggested method was successfully used for determination of phosalone and ethion in Chabahar Bay seawaters with satisfactory results.     

Atom transfer radical polymerization of methyl methacrylate using copper-based homogeneous and heterogeneous catalysts

This study aimed at polymerization of methyl methacrylate with novel catalysts in the atom transfer radical polymerization (ATRP) condition at 90 °C. This was accomplished using CuBr/N-(2-aminoethyl)-3-aminopropyltrimethoxysilane (CuBr–AEAPTMS) as a homogeneous catalyst and one time with CuBr@AEAPTMS/SBA-15 as a heterogeneous catalyst. Catalysts were characterized using TGA, FT-IR, and UV–Vis spectroscopy. The structural analysis of the polymer was carried out by ¹³C NMR spectroscopy and GPC. Three characteristic parts of polymer produced by ATRP method including the initiator, monomer units, and end group was shown in ¹³C NMR spectra. In addition, the presence of C–Br unit showed that the polymerization process is alive. The ¹H NMR analysis was used for kinetic investigation of methyl methacrylate polymerization with homogeneous and heterogeneous catalysts that showed high monomer conversion (98 and 90% after 35 min, respectively) and good control of molecular weight with a dispersity (Р= 1.5–1.7). In addition, the plot of ln ([monomer]₀/[monomer] _t ) versus time gave linear relationships indicating a constant concentration of the propagating species throughout the polymerization. Finally, the results of the polymerization using heterogeneous catalyst compared with homogeneous catalyst revealed that it was according to ATRP method.     

Evaluation of some new heterocycles bearing 2-oxoquinolyl moiety as immunomodulator against highly pathogenic avian influenza virus (H5N8)

The hydrazide obtained from furan-2(3H)-one integrated with a quinolin-2(1H)-one core reported previously by our research group was utilized as a building block synthon to obtain some pyrrolone, pyridazinone, oxadiazole, and triazole derivatives through treating with some carbon electrophilic reagents, for example, chloroacetyl chloride, benzoyl chloride, acetic anhydride, carbon disulfide, 3,4-dimethoxybenzaldehyde, and 2-oxoquinolin-3-carbaldehyde to achieve the target heterocycles. The newly synthesized compounds were evaluated as immunomodulator against highly pathogenic avian influenza virus (H₅N₈). The compounds 1 , 11 , and 17 displayed the highest potency (100% protection).     

Novel flame retardant paint based on Co(II) and Ni(II) metal complexes as new additives for surface coating applications

The study is focused on the synthesis of a new Co(II) and Ni(II) metal complexes, which is synthesized by the reaction of the isatin 4‐aminoantipyrine Schiff base ligand with selected divalent Co(II) and Ni(II) ions and their possible applications as flame retardant additives in paint formulations for surface coating application. The prepared metal complexes were characterized using a combination of Fourier transform infrared, elemental analysis, proton nuclear magnetic resonance, ¹³C‐NMR spectra, and mass spectroscopy. The prepared Schiff base ligand metal complexes were physically added to alkyd paint formulation to give coating formulations at a laboratory scale and then applied onto plywood and steel panels using a brush. The ignitability and oxygen index values obtained indicated that the paint which contained the prepared Co(II) and Ni(II) metal complexes as additives exhibited very good flame retardant. The physical and mechanical characteristics of the coatings were studied in order to estimate any disadvantages due to the incorporation of the additives. It was discovered that the added substances did not impact the hardness, flexibility, and adhesion of the prepared coating films. The gloss of the paint formulation film was improved due to the incorporation of the aromatic ring into the formulation and the level of the oil percent.