Doxycycline Interferes with Zika Virus Serine Protease and Inhibits Virus Replication in Human Skin Fibroblasts

Zika virus (ZIKV) represents a re-emerging threat to global health due to its association with congenital birth defects. ZIKV NS2B-NS3 protease is crucial for virus replication by cleaving viral polyprotein at various junctions to release viral proteins and cause cytotoxic effects in ZIKV-infected cells. This study characterized the inhibitory effects of doxycycline against ZIKV NS2B-NS3 protease and viral replication in human skin cells. The in silico data showed that doxycycline binds to the active site of ZIKV protease at a low docking energy (−7.8 Kcal/mol) via four hydrogen bonds with the protease residues TYR1130, SER1135, GLY1151, and ASP83. Doxycycline efficiently inhibited viral NS2B-NS3 protease at average human temperature (37 °C) and human temperature with a high fever during virus infection (40 °C). Interestingly, doxycycline showed a higher inhibitory effect at 40 °C (IC50 = 5.3 µM) compared to 37 °C (9.9 µM). The virus replication was considerably reduced by increasing the concentration of doxycycline. An approximately 50% reduction in virus replication was observed at 20 µM of doxycycline. Treatment with 20 µM of doxycycline reduced the cytopathic effects (CPE), and the 40 µM of doxycycline almost eliminated the CPE of human skin cells. This study showed that doxycycline binds to the ZIKV protease and inhibits its catalytic activity at a low micro-molecular concentration range. Treatment of human skin fibroblast with doxycycline eliminated ZIKV infection and protected the cells against the cytopathic effects of the infection.     

A novel proposal for DWDM demultiplexer design using modified-T photonic crystal structure

We propose an ultra compact structure to realize demultiplexing operation for Dense Wavelength Division Multiplexing (DWDM) communication systems using resonant cavity in modified-T Photonic Crystal (PC) structure. To the best of our knowledge, this is for the first time that a PC-based demultiplexer has been achieved with 1 nm channel spacing and 0.45 nm mean value of bandwidth without using either specific materials or complexities in fabrication process. Designs offering improvement of channel spacing and bandwidth of the proposed demultiplexer is our aim in this work. The attained characteristics are approximately in the range of the DWDM communication systems. Accurate resonant cavities have been used in terms of location and size of holes in the proposed structure in order for them to capture desired wavelengths in optical telecommunication range. Our simulations indicate the average amount of crosstalk (Xt) and the average quality factor (Q) to be ?21.1 dB and 3488, respectively. Two-dimensional (2D) Finite-Difference-Time-Domain (FDTD) is chosen for simulation of the proposed structure. The footprint of the structure is approximately 536 μm² and can be fabricated and integrated densely and easily.     

Highly selective catalytic Friedel–Crafts sulfonylation of aromatic compounds using a FeCl3-based ionic liquid

Friedel–Crafts sulfonylation of aromatic compounds was carried out using FeCl₃-based ionic liquid. These liquids serve as efficient media as well as Lewis acid catalyst.     

Mixed micellization of gemini surfactant with nonionic surfactant in aqueous media: a fluorometric study

Herein we report on the study of the interactions between alkanediyl-α,ω-type cationic dimeric (gemini) surfactant and the nonionic Triton X-100 in aqueous medium. The critical micelle concentrations of binary mixtures were determined by fluorometric study. Using the regular solution theory for the analysis of the experimental data, the attractive nature of interactions and synergistic behavior of gemini surfactant and Triton X-100 mixture were demonstrated. The micelle aggregation number was measured using steady state fluorescence quenching method. The micropolarity, binding constant and dielectric constant of mixed systems were determined from the ratio of peak’s intensity (I ₁/I ₃) in the pyrene fluorescence emission spectrum.     

Chemical modification of alumina surface by immobilization of 1-((5-nitrofuran-2-yl)methylene)thiosemicarbazide for extractive concentration of silver ions

A column, solid phase extraction (SPE), preconcentration method was developed for determination of silver by using alumina coated with 1-((5-nitrofuran-2-yl)methylene)thiosemicarbazide and determination by flame atomic absorption spectrometry. The separation/preconcentration conditions for the quantitative recovery were investigated. At pH 2, the maximum sorption capacity of Ag⁺ was 7.5?mg?g^?1. The linearity was maintained in the concentration range of 0.02–11.0?µg?mL^?1 in the final solution or 0.14–1.10?×?10^4?ng?mL^?1 in the original solution for silver. The preconcentration factor of 140 and relative standard deviation of ±1.4% was obtained, under optimum conditions. The limit of detection (LOD) was calculated as 0.112?ng?mL^?1, based on 3σ_bl/m (n?=?8) in the original solutions. The proposed method was successfully applied to the determination trace amounts of silver in the environmental samples such as tea, rice and wheat flour, mint, and real water samples.     

Delayed autocatalytic behavior of Mn(II) ions at a critical ratio: The effect of structural isomerism on permanganic oxidation of L‐norleucine

The kinetics of the permanganic oxidation process of L ‐norleucine, L ‐leucine, L ‐iso‐leucine, and L ‐tert‐leucine in strong acid medium has been investigated using a spectrophotometric technique. Conclusive evidences have proven autocatalytic activity of Mn(II) for these reactions in strong acid medium analogous to weak acid medium, but in the former, ratio of Mn(II) to amino acid concentration must reach a certain amount for autocatalytic phenomenon to emerge, which we call “critical ratio.” This critical ratio depends on the nature of the amino acid employed. Thus considering “delayed autocatalytic behavior” of Mn(II) ions, rate equations satisfying observations for both catalytic and noncatalytic routes have been presented. Kinetic data in a noncatalytic pathway have been fitted to a biparametric equation including inductive, steric, and hyperconjugation correction effects, and it is determined that by shifting the side branch on a carbon chain toward an α‐carbon atom (adjacent to amino acid's functional group) and also adding branches to the α‐carbon atom, the reaction rate in the noncatalytic pathway decreases. Inductive and steric hindrance factors in amino acid's carbon chain are effective on processes' rate both in catalytic and noncatalytic pathways. © 2005 Wiley Periodicals, Inc. Int J Chem Kinet 38: 1–11, 2006     

Preparation and lithiation of tris(o-tolyldimethylsilyl)methane

The compound (o-MeC₆H₄Me₂Si)₃CH has been prepared and shown to be metallated slowly by MeLi in refluxing THF to give the lithium reagent (o-MeC₆H₄Me₂Si)₃CLi. This reacts with MeI to give (o-MeC₆H₄Me₂Si)₃CMe, but not with Me₂SiHCl nor with a range of other organosilicon halides.     

Computational and spectral investigation of 5,12-dihydro-5,12-ethanonaphthacene-13-carbaldehyde

A conformational search of 5,12-dihydro-5,12-ethanonaphthacene-13-carbaldehyde predicted the presence of twelve conformations. The geometry of the twelve conformations established at the B3LYP/6-31G* level showed only six unique ones. Vibrational frequencies were calculated at the B3LYP/6-31G* level. The calculated vibrational frequencies enabled us to interpret the appearance of two bands corresponding to the C=O stretching mode of 5,12-dihydro-5,12-ethanonaphthacene-13-carbaldehyde. The first band corresponded to the 5,12-dihydro-5,12-ethanonaphthacene-13-carbaldehyde structure where the aldehyde group O atom was above the benzene or naphthalene ring. The other band was due to the O atom of the aldehyde group pointing out of the benzene or naphthalene ring.     

Zebrafish embryo development in a microfluidic flow-through system

The zebrafish embryo is a small, cheap, whole-animal model which may replace rodents in some areas of research. Unfortunately, zebrafish embryos are commonly cultured in microtitre plates using cell-culture protocols with static buffer replacement. Such protocols are highly invasive, consume large quantities of reagents and do not readily permit high-quality imaging. Zebrafish and rodent embryos have previously been cultured in static microfluidic drops, and zebrafish embryos have also been raised in a prototype polydimethylsiloxane setup in a Petri dish. Other than this, no animal embryo has ever been shown to undergo embryonic development in a microfluidic flow-through system. We have developed and prototyped a specialized lab-on-a-chip made from bonded layers of borosilicate glass. We find that zebrafish embryos can develop in the chip for 5 days, with continuous buffer flow at pressures of 0.005-0.04 MPa. Phenotypic effects were seen, but these were scored subjectively as 'minor'. Survival rates of 100% could be reached with buffer flows of 2 μL per well per min. High-quality imaging was possible. An acute ethanol exposure test in the chip replicated the same assay performed in microtitre plates. More than 100 embryos could be cultured in an area, excluding infrastructure, smaller than a credit card. We discuss how biochip technology, coupled with zebrafish larvae, could allow biological research to be conducted in massive, parallel experiments, at high speed and low cost.