Synthesis, structure, and spectroscopy of phenylacetylenylene rods incorporating meso-substituted dipyrrin ligands

The synthesis, structure, and spectroscopic characterization of a series of phenylacetylenylene rodlike molecules containing dipyrromethene (dipyrrin) ligands are described. The combination of the phenylacetylenylene groups with the porphyrinogenic dipyrrin moieties results in a rich absorption spectroscopy for these compounds, although the fluorescence of the phenylacetylenylene moiety is quenched by presence of the dipyrrin chelator. The Cu(2+) and Fe(3+) complexes of these ligands have been prepared and three of these compounds have been structurally characterized by using single-crystal X-ray diffraction. Unlike other octahedral metal-dipyrrin complexes described to date, one of the iron complexes demonstrates ideal threefold symmetry in the solid-state. The elongated structure and high symmetry of these complexes suggests the use of these meso-substituted phenylacetylenylene ligands as an interesting class of extended, branched molecules for the construction of supramolecular architectures.     

Effects of alkali metal halide salts on the hydrogen bond network of liquid water

Measurements of the oxygen K-edge X-ray absorption spectrum (XAS) of aqueous sodium halide solutions demonstrate that ions significantly perturb the electronic structure of adjacent water molecules. The addition of halide salts to water engenders an increase in the preedge intensity and a decrease in the postedge intensity of the XAS, analogous to those observed when increasing the temperature of pure water. The main-edge feature exhibits unique behavior and becomes more intense when salt is added. Density functional theory calculations of the XAS indicate that the observed red shift of the water transitions as a function of salt concentration arises from a strong, direct perturbation of the unoccupied molecular orbitals on water by anions, and does not require significant distortion of the hydrogen bond network beyond the first solvation shell. This contrasts the temperature-dependent spectral variations, which result primarily from intensity changes of specific transitions due to geometric rearrangement of the hydrogen bond network.     

The use of transition-state theory to extrapolate rate coefficients for reactions of H atoms with alkanes

The thermochemical kinetics formulation of conventional transition state theory has been applied to metathesis reactions of H atoms with a series of alkanes in order to provide a sound framework for the intercomparison of experimental data, and also to extrapolate rate coefficients to temperature regimes that may lie beyond the range of experiments. The calculations require a value for the rate coefficient at some temperature, necessitating a discussion of the extant experimental data and their reliability. The procedures are described, the results of the calculations are presented, and their agreement with experimental data (for methane, ethane, propane, butane, pentane, isobutane, cyclopropane, cyclohexane, neopentane, neooctane, and 2,2,3-trimethylbutane) is discussed. A general expression for reactions of H with large (more than 4 carbons) alkanes is proposed: where n_p, n_s, and n_t are the numbers of primary, secondary, and tertiary H atoms available for abstraction.     

Evaluation of multidimensional (ion-exchange/reversed-phase) protein separations using linear and step gradients in the first dimension

The performance characteristics of multidimensional liquid chromatographic protein separations were evaluated using on-line electrospray mass detection, and a novel workflow for automated LC/MS data processing. Two-dimensional ion exchange/reversed-phase LC separations of Escherichia coli cytosol were conducted using either a continuous linear or discontinuous step gradient in the first dimension. Chromatographic profiles of the top 100 most abundant components were characterized to assess overall separation reproducibility within each mode, and to characterize differences in component distribution between the two modes of operation. Analysis of the resulting data indicates that multidimensional separations of complex protein mixtures can be done reproducibly. Furthermore, under the conditions employed within this study, a linear first dimension gradient was more effective at fractionating the protein mixture, distributing fewer major components to multiple second dimension cycles than an equivalent step gradient. The application of on line mass spectrometry, and automated processing of the resulting data, proved valuable for producing component level analysis of multidimensional protein separations.     

Synthesis and characterization of scandium silyl complexes of the type Cp*2ScSiHRR'. sigma-Bond metathesis reactions and catalytic dehydrogenative silation of hydrocarbons

The scandium dihydrosilyl complexes Cp*(2)ScSiH(2)R (R = Mes (4), Trip (5), SiPh(3) (6), Si(SiMe(3))(3) (7); Mes = 2,4,6-Me(3)C(6)H(2), Trip = 2,4,6-(i)()Pr(3)C(6)H(2)) and Cp*(2)ScSiH(SiMe(3))(2) (8) were synthesized by addition of the appropriate hydrosilane to Cp*(2)ScMe (1). Studies of these complexes in the context of hydrocarbon activation led to discovery of catalytic processes for the dehydrogenative silation of hydrocarbons (including methane, isobutene and cyclopropane) with Ph(2)SiH(2) via sigma-bond metathesis.     

THERMODYNAMICS OF PORPHYRIN BINDING TO SERUM ALBUMIN: EFFECTS OF TEMPERATURE, OF PORPHYRIN SPECIES and OF ALBUMIN-CARRIED FATTY ACIDS

Abstract Porphyrin binding to serum albumin was studied at the molecular level probing the effects of: porphyrin self-aggregation, porphyrin species, temperature and protein-bound fatty acids. Human serum albumin was found to have a single high-affinity site for porphyrin monomers, with binding constants of 2 x 10⁶, 5 x 10⁷ and 3 x 10⁸ (37^o C, neutral pH, M ⁻¹), for hemato-, deutero- and protoporphyrins, respectively. Three equilibria models for the dimer binding were developed and tested. The data were found to fit best with a model proposing a single high-affinity binding site for the dimer, independent of and different than the monomer site. The binding constants of the hematoporphyrin and deuteroporphyrin dimers to human serum albumin (37^o C, neutral pH, M^−l) being 4 x 10* and 5 x 10⁸ respectively. The temperature dependence (Dp and HSA, 22-37^o C) of the monomer binding showed the process to be entropy-driven (δG^o= -45 kJ mol⁻¹; δS^o=+146 kJ mol⁻¹; δH^o= 0 kJ mol⁻¹). For the dimer binding, the enthalpy change was found to be highly temperature-dependent implying continuous changes in the heat capacity of the system over the entire temperature range, the trend at the 37^o C region fitting an entropy-driven process. The monomer vs dimer differences in temperature dependence strongly support separate and independent binding sites for these species. Similar thermodynamics were determined for fatty-acid carrying as well as for fatty-acid free HSA, with mild quantitative (but not qualitative) shifts.     

Cyclodehydration of diphenyl-trifluoromethyl-carbinols

The halochromic product from di-(p-fluorophenyl) -trifluoromethylcarbinol and sulphuric acid gives with ethyl mercaptan 3-ethylthio-6 fluoro-9-trifluoromethylfluorene. Analogous reactions have been observed with (p-chlorophenyl)-(p-fluorophenyl)-, with (p-fluorophenyl)-phenyl-. and with diphenyl-trifluoromethyl-carbinol.

The infra-red spectra of the fluorene derivatives formed are discussed.     

Structural Consequences of S → Se Substitution in some Symmetrical [M(S2CNR2)3] Complexes

The consequences of replacement of the symmetrically chelate ligands in [M(E₂CNR₂)₃] (E = S, Se) complexes of potential 32 symmetry by analogous mixed S,Se unsymmetrical chelates are explored for both small (M = Co) and large (M = In) metal atoms, and R = primary (Et) and secondary (ⁱPr) alkyl substituents by way of low‐temperature single crystal X‐ray studies of [(Co(SSeCNEt₂)₃] ([Co(Se₂CNEt₂)₃] also determined as datum), and [In(SSeCNR₂)₃], R = Et, ⁱPr. The structure of [(ⁱPr₂N·CS·Se)₂] is also recorded.     

In situ soft X-ray studies of ethylene oxidation mechanisms and intermediates on the Pt(111) surface

In situ studies of ethylene oxidation on Pt(111) have been performed using a powerful combination of fluorescence yield soft X-ray methods for temperatures up to 600 K and oxygen pressures up to 0.01 Torr. Absolute carbon coverages have been determined both in steady-state and dynamic catalytic conditions on the Pt(111) surface. Fluorescence yield near-edge spectroscopy (FYNES) and temperature-programmed fluorescence yield near-edge spectroscopy (TP-FYNES) experiments above the carbon K edge were used to identify the structure and bonding of the dominant surface species during oxidation. TP-FYNES experiments of preadsorbed ethylene coverages in oxygen pressures up to 0.01 Torr indicate a stable intermediate is formed over the 215-300 K temperature range. By comparing the intensity of the C-H sigma resonance at the magic angle with the intensity in the carbon continuum, the stoichiometry of this intermediate has been determined explicitly. Based on calibration with known C-H stoichiometries, the intermediate has a C(2)H(3) stoichiometry for oxygen pressures up to 0.01 Torr, indicating oxydehydrogenation occurs before skeletal oxidation. FYNES spectra at normal and glancing incidences were performed to characterize the structure and bonding of this intermediate. Using FYNES spectra of ethylene, ethylidyne, and acetylene as reference standard, this procedure indicates the oxidation intermediate is tri-sigma vinyl. Thus, oxidation of ethylene proceeds through a vinyl intermediate, with oxydehydrogenation preceding skeletal oxidation.     

Reactions of a carbene stabilised indium trihydride complex, [InH3{CN(Mes)C2H2N(Mes)}] Mes = mesityl,with transition metal complexes

The reactivity of the carbene stabilised indium trihydride complex, [InH₃(IMes)] IMes = 1,3-dimesitylimidazol-2-ylidene, toward a variety of transition metal complexes has been investigated. The study has shown that the InH₃ complex can act as a carbene and/or hydride transfer reagent to transition metal centres but does not yield heterobimetallic materials. Two new complexes, [Cp₂Ti(-Cl)₂Zn(IMes)Cl] and [CpNi(H)(IMes)], have resulted from this work, both of which have been spectroscopically and structurally characterised.