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1.
KL Britton HF Rogers Y Asano T Dairi Y Kato TJ Stillman DW Rice 《Acta crystallographica. Section D, Biological crystallography》1998,53(4):124-126
The novel NAD+-linked opine dehydrogenase from a soil isolate Arthrobacter sp. strain 1C belongs to an enzyme superfamily whose members exhibit quite diverse substrate specificites. Crystals of this opine dehydrogenase, obtained in the presence or absence of co-factor and substrates, have been shown to diffract to beyond 1.8 ? resolution. X-ray precession photographs have established that the crystals belong to space group P21212, with cell parameters a = 104.9, b = 80.0, c = 45.5 ? and a single subunit in the asymmetric unit. The elucidation of the three-dimensional structure of this enzyme will provide a structural framework for this novel class of dehydrogenases to enable a comparison to be made with other enzyme families and also as the basis for mutagenesis experiments directed towards the production of natural and synthetic opine-type compounds containing two chiral centres. 相似文献
2.
We introduce a new class of experiments which provide graphic insights into the propagation of acoustic waves in anisotropic media. Simply stated, we have devised a means of observing the expanding acoustic wavefront from a point disturbance in a solid. The data may be viewed as a movie or a series of snapshots. The observed wavefronts represent the group-velocity surfaces of acoustic waves, which reflect the basic elastic anisotropy of the solid. The technique has been applied to coherent acoustic waves with frequencies in the megahertz range (at ambient temperatures) and to incoherent heat pulses in the hundred-gigahertz range (at liquid-helium temperatures). In this article, we first provide a pedagogical introduction to wave propagation in elastically anisotropic media, reviewing some early methods for visualizing acoustic waves. Next, we describe the “acoustic wavefront imaging” method and give representative results in crystals and composite materials. Finally, we show how this method relates to recent advances in phonon imaging and internal diffraction of ultrasound. 相似文献
3.
Toward a microchip-based solid-phase extraction method for isolation of nucleic acids 总被引:7,自引:0,他引:7
Wolfe KA Breadmore MC Ferrance JP Power ME Conroy JF Norris PM Landers JP 《Electrophoresis》2002,23(5):727-733
A silica-based solid-phase extraction system suitable for incorporation into a microchip platform (nu-total analytical system; nu-TAS) would find utility in a variety of genetic analysis protocols, including DNA sequencing. The extraction procedure utilized is based on adsorption of the DNA onto bare silica. The procedure involves three steps: (i) DNA adsorption in the presence of a chaotropic salt, (ii) removal of contaminants with an alcohol/water solution, and (iii) elution of the adsorbed DNA in a small volume of buffer suitable for polymerase chain reaction (PCR) amplification. Multiple approaches for incorporation of this protocol into a microchip were examined with regard to extraction efficiency, reproducibility, stability, and the potential to provide PCR-amplifiable DNA. These included packing microchannels with silica beads only, generating a continuous silica network via sol-gel chemistry, and combinations of these. The optimal approach was found to involve immobilizing silica beads packed into the channel using a sol-gel network. This method allowed for successful extraction and elution of nanogram quantities of DNA in less than 25 min, with the DNA obtained in the elution buffer fraction. Evaluation of the eluted DNA indicated that it was of suitable quality for subsequent amplification by PCR. 相似文献
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7.
Wu Z Zhang XJ Cody RB Wolfe RR 《European journal of mass spectrometry (Chichester, England)》2004,10(5):619-623
The application of time-of-flight mass spectrometry to isotope ratio measurements has been limited by the relatively low dynamic range of the time-to-digital converter detectors available on commercial LC/ToF-MS systems. Here we report the measurement of phenylalanine isotope ratio enrichment by using a new LC/ToF-MS system with wide dynamic range. Underivatized phenylalanine was injected onto a C18 column directly with 0.1% formic acid/acetonitrile as the mobile phase. The optimal instrument parameters for the time-of-flight mass spectrometer were determined by tuning the instrument with a phenylalanine standard. The accuracy of the isotope enrichment measurement was determined by the injection of standard solutions with known isotope ratios ranging from 0.02% to 9.2%. A plot of the results against the theoretical values gave a linear curve with R2 of 0.9999. The coefficient of variation for the isotope ratio measurement was below 2%. The method is simple, rapid, and accurate and presents an attractive alternative to traditional GC/MS applications. 相似文献
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9.
M. A. Wolfe 《Numerische Mathematik》1978,31(2):153-174
Summary Given an iterative methodM
0, characterized byx
(k+1=G
0(x(
k
)) (k0) (x(0) prescribed) for the solution of the operator equationF(x)=0, whereF:XX is a given operator andX is a Banach space, it is shown how to obtain a family of methodsM
p characterized byx
(k+1=G
p
(x(
k
)) (k0) (x(0) prescribed) with order of convergence higher than that ofM
o. The infinite dimensional multipoint methods of Bosarge and Falb [2] are a special case, in whichM
0 is Newton's method.Analogues of Theorems 2.3 and 2.36 of [2] are proved for the methodsM
p, which are referred to as extensions ofM
0. A number of methods with order of convergence greater than two are discussed and existence-convergence theorems for some of them are proved.Finally some computational results are presented which illustrate the behaviour of the methods and their extensions when used to solve systems of nonlinear algebraic equations, and some applications currently being investigated are mentioned. 相似文献
10.
Substitution at the C(7) position of purine nucleotides by a potent electron-withdrawing nitro group facilitates the cleavage of glycosidic bonds under alkaline conditions. This property is useful for sequence-specific cleavage of DNA containing these analogues. Here we describe the preparation of 7-deaza-7-NO(2)-dA and 7-deaza-7-NO(2)-dG using two different approaches, starting from 2'-deoxy-adenosine and 6-chloro-7-deaza-guanine, respectively. These modified nucleosides were converted to nucleotide triphosphates, each of which can replace the corresponding, naturally occurring triphosphate to support PCR amplification. [structure: see text] 相似文献